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  • Javascriptlibrary more efficient than Rickshaw for realtime visualizations

    - by dan kutz
    I want to visualize data as time-series graphs on mobile devices(tablets) and therefore stumbled upon rickshaw, which is based on D3. First I must say I was a little bit confused when I realized that realtime in web design is defined totally different to realtime in engineering which has fixed(and often very short) timeframes. Anyway my aim is to visualize the data as fast as possible, and on older tablets visualization with rickshaw is quite slow. Can anybody recommend another library, which may be more efficient in rendering? Or is there no way out and I have to go native? regards Dan.

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  • Rewriting a for loop in pure NumPy to decrease execution time

    - by Statto
    I recently asked about trying to optimise a Python loop for a scientific application, and received an excellent, smart way of recoding it within NumPy which reduced execution time by a factor of around 100 for me! However, calculation of the B value is actually nested within a few other loops, because it is evaluated at a regular grid of positions. Is there a similarly smart NumPy rewrite to shave time off this procedure? I suspect the performance gain for this part would be less marked, and the disadvantages would presumably be that it would not be possible to report back to the user on the progress of the calculation, that the results could not be written to the output file until the end of the calculation, and possibly that doing this in one enormous step would have memory implications? Is it possible to circumvent any of these? import numpy as np import time def reshape_vector(v): b = np.empty((3,1)) for i in range(3): b[i][0] = v[i] return b def unit_vectors(r): return r / np.sqrt((r*r).sum(0)) def calculate_dipole(mu, r_i, mom_i): relative = mu - r_i r_unit = unit_vectors(relative) A = 1e-7 num = A*(3*np.sum(mom_i*r_unit, 0)*r_unit - mom_i) den = np.sqrt(np.sum(relative*relative, 0))**3 B = np.sum(num/den, 1) return B N = 20000 # number of dipoles r_i = np.random.random((3,N)) # positions of dipoles mom_i = np.random.random((3,N)) # moments of dipoles a = np.random.random((3,3)) # three basis vectors for this crystal n = [10,10,10] # points at which to evaluate sum gamma_mu = 135.5 # a constant t_start = time.clock() for i in range(n[0]): r_frac_x = np.float(i)/np.float(n[0]) r_test_x = r_frac_x * a[0] for j in range(n[1]): r_frac_y = np.float(j)/np.float(n[1]) r_test_y = r_frac_y * a[1] for k in range(n[2]): r_frac_z = np.float(k)/np.float(n[2]) r_test = r_test_x +r_test_y + r_frac_z * a[2] r_test_fast = reshape_vector(r_test) B = calculate_dipole(r_test_fast, r_i, mom_i) omega = gamma_mu*np.sqrt(np.dot(B,B)) # write r_test, B and omega to a file frac_done = np.float(i+1)/(n[0]+1) t_elapsed = (time.clock()-t_start) t_remain = (1-frac_done)*t_elapsed/frac_done print frac_done*100,'% done in',t_elapsed/60.,'minutes...approximately',t_remain/60.,'minutes remaining'

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  • How to optimize an database suggestion engine

    - by Dimitar Vouldjeff
    Hi, I`m making an online engine for item-to-item recommending movies. I have made some researches and I think that the best way to implement that is using pearson correlation and make a table with item1, item2 and correlation fields, but the problem is that after each rate of item I have to regenerate the correlation for in the worst case N records (where N is the number of items). Another think that I read is the following article, but I haven`t thought a way to implement it. So what is your suggestion to optimize this process? Or any other suggestions? Thanks.

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  • Oracle Sql Query taking a day long to return results using dblink

    - by Suresh S
    Guys i have the following oracle sql query that gives me the monthwise report between the dates. Basically for nov month i want sum of values between the dates 01nov to 30 nov. The table tha is being queried is residing in another database and accesssed using dblink. The DT columns is of NUMBER type (for ex 20101201) .The execution of the query is taking a day long and not completed. kindly suggest me , if their is any optimisation that can be suggested to my DBA on the dblink, or any tuning that can be done on the query , or rewriting the same. SELECT /*+ PARALLEL (A 8) */ TO_CHAR(TRUNC(TRUNC(SYSDATE,'MM')- 1,'MM'),'MONYYYY') "MONTH", TYPE AS "TYPE", COLUMN, COUNT (DISTINCT A) AS "A_COUNT", COUNT (COLUMN) AS NO_OF_COLS, SUM (DURATION) AS "SUM_DURATION", SUM (COST) AS "COST" FROM **A@LN_PROD A** WHERE DT >=TO_NUMBER(TO_CHAR(TRUNC(TRUNC(SYSDATE,'MM')-1,'MM'),'YYYYMMDD')) AND DT < TO_NUMBER(TO_CHAR(TRUNC(TRUNC(SYSDATE,'MM'),'MM'),'YYYYMMDD')) GROUP BY TYPE, COLUMN

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  • An image from byte to optimized web page presentation

    - by blgnklc
    I get the data of the stored image on database as byte[] array; then I convert it to System.Drawing.Image like the code shown below; public System.Drawing.Image CreateImage(byte[] bytes) { System.IO.MemoryStream memoryStream = new System.IO.MemoryStream(bytes); System.Drawing.Image image = System.Drawing.Image.FromStream(memoryStream); return image; } (*) On the other hand I am planning to show a list of images on asp.net pages as the client scrolls downs the page. The more user gets down and down on the page he/she does see the more photos. So it means fast page loads and rich user experience. (you may see what I mean on www.mashable.com, just take care the new loads of the photos as you scroll down.) Moreover, the returned imgae object from the method above, how can i show it in a loop dynamically using the (*) conditions above. Regards bk

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  • when is java faster than c++ (or when is JIT faster then precompiled)?

    - by kostja
    I have heard that under certain circumstances, Java programs or rather parts of java programs are able to be executed faster than the "same" code in C++ (or other precompiled code) due to JIT optimizations. This is due to the compiler being able to determine the scope of some variables, avoid some conditionals and pull similar tricks at runtime. Could you give an (or better - some) example, where this applies? And maybe outline the exact conditions under which the compiler is able to optimize the bytecode beyond what is possible with precompiled code? NOTE : This question is not about comparing Java to C++. Its about the possibilities of JIT compiling. Please no flaming. I am also not aware of any duplicates. Please point them out if you are.

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  • MySQL subqueries

    - by swamprunner7
    Can we do this query without subqueries? SELECT login, post_n, (SELECT SUM(vote) FROM votes WHERE votes.post_n=posts.post_n)AS votes, (SELECT COUNT(comments.post_n) FROM comments WHERE comments.post_n=posts.post_n)AS comments_count FROM users, posts WHERE posts.id=users.id AND (visibility=2 OR visibility=3) ORDER BY date DESC LIMIT 0, 15 tables: Users: id, login Posts: post_n, id, visibility Votes: post_n, vote id — it`s user id, Users the main table.

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  • Faster way to split a string and count characters using R?

    - by chrisamiller
    I'm looking for a faster way to calculate GC content for DNA strings read in from a FASTA file. This boils down to taking a string and counting the number of times that the letter 'G' or 'C' appears. I also want to specify the range of characters to consider. I have a working function that is fairly slow, and it's causing a bottleneck in my code. It looks like this: ## ## count the number of GCs in the characters between start and stop ## gcCount <- function(line, st, sp){ chars = strsplit(as.character(line),"")[[1]] numGC = 0 for(j in st:sp){ ##nested ifs faster than an OR (|) construction if(chars[[j]] == "g"){ numGC <- numGC + 1 }else if(chars[[j]] == "G"){ numGC <- numGC + 1 }else if(chars[[j]] == "c"){ numGC <- numGC + 1 }else if(chars[[j]] == "C"){ numGC <- numGC + 1 } } return(numGC) } Running Rprof gives me the following output: > a = "GCCCAAAATTTTCCGGatttaagcagacataaattcgagg" > Rprof(filename="Rprof.out") > for(i in 1:500000){gcCount(a,1,40)}; > Rprof(NULL) > summaryRprof(filename="Rprof.out") self.time self.pct total.time total.pct "gcCount" 77.36 76.8 100.74 100.0 "==" 18.30 18.2 18.30 18.2 "strsplit" 3.58 3.6 3.64 3.6 "+" 1.14 1.1 1.14 1.1 ":" 0.30 0.3 0.30 0.3 "as.logical" 0.04 0.0 0.04 0.0 "as.character" 0.02 0.0 0.02 0.0 $by.total total.time total.pct self.time self.pct "gcCount" 100.74 100.0 77.36 76.8 "==" 18.30 18.2 18.30 18.2 "strsplit" 3.64 3.6 3.58 3.6 "+" 1.14 1.1 1.14 1.1 ":" 0.30 0.3 0.30 0.3 "as.logical" 0.04 0.0 0.04 0.0 "as.character" 0.02 0.0 0.02 0.0 $sampling.time [1] 100.74 Any advice for making this code faster?

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  • Can anyone recommend a decent tool for optimising images other than photoshop

    - by toomanyairmiles
    Can anyone recommend a decent tool for optimising images other than adobe photoshop, the gimp etc? I'm looking to optimise images for the web preferably online and free. Basically I have a client who can't install additional software on their work PC but needs to optimise photographs and other images for their website and is presently uploading 1 or 2 Mb files. On a personal level I'm interested to see what other people are using...

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  • Hierarchical Hibernate, how many queries are executed?

    - by ghost1
    So I've been dealing with a home brew DB framework that has some seriously flaws, the justification for use being that not using an ORM will save on the number of queries executed. If I'm selecting all possibile records from the top level of a joinable object hierarchy, how many separate calls to the DB will be made when using an ORM (such as Hibernate)? I feel like calling bullshit on this, as joinable entities should be brought down in one query , right? Am I missing something here? note: lazy initialization doesn't matter in this scenario as all records will be used.

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  • Does the <script> tag position in HTML affects performance of the webpage?

    - by Rahul Joshi
    If the script tag is above or below the body in a HTML page, does it matter for the performance of a website? And what if used in between like this: <body> ..blah..blah.. <script language="JavaScript" src="JS_File_100_KiloBytes"> function f1() { .. some logic reqd. for manipulating contents in a webpage } </script> ... some text here too ... </body> Or is this better?: <script language="JavaScript" src="JS_File_100_KiloBytes"> function f1() { .. some logic reqd. for manipulating contents in a webpage } </script> <body> ..blah..blah.. ..call above functions on some events like onclick,onfocus,etc.. </body> Or this one?: <body> ..blah..blah.. ..call above functions on some events like onclick,onfocus,etc.. <script language="JavaScript" src="JS_File_100_KiloBytes"> function f1() { .. some logic reqd. for manipulating contents in a webpage } </script> </body> Need not tell everything is again in the <html> tag!! How does it affect performance of webpage while loading? Does it really? Which one is the best, either out of these 3 or some other which you know? And one more thing, I googled a bit on this, from which I went here: Best Practices for Speeding Up Your Web Site and it suggests put scripts at the bottom, but traditionally many people put it in <head> tag which is above the <body> tag. I know it's NOT a rule but many prefer it that way. If you don't believe it, just view source of this page! And tell me what's the better style for best performance.

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  • "Anagram solver" based on statistics rather than a dictionary/table?

    - by James M.
    My problem is conceptually similar to solving anagrams, except I can't just use a dictionary lookup. I am trying to find plausible words rather than real words. I have created an N-gram model (for now, N=2) based on the letters in a bunch of text. Now, given a random sequence of letters, I would like to permute them into the most likely sequence according to the transition probabilities. I thought I would need the Viterbi algorithm when I started this, but as I look deeper, the Viterbi algorithm optimizes a sequence of hidden random variables based on the observed output. I am trying to optimize the output sequence. Is there a well-known algorithm for this that I can read about? Or am I on the right track with Viterbi and I'm just not seeing how to apply it?

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  • Optimizing an embedded SELECT query in mySQL

    - by Crazy Serb
    Ok, here's a query that I am running right now on a table that has 45,000 records and is 65MB in size... and is just about to get bigger and bigger (so I gotta think of the future performance as well here): SELECT count(payment_id) as signup_count, sum(amount) as signup_amount FROM payments p WHERE tm_completed BETWEEN '2009-05-01' AND '2009-05-30' AND completed > 0 AND tm_completed IS NOT NULL AND member_id NOT IN (SELECT p2.member_id FROM payments p2 WHERE p2.completed=1 AND p2.tm_completed < '2009-05-01' AND p2.tm_completed IS NOT NULL GROUP BY p2.member_id) And as you might or might not imagine - it chokes the mysql server to a standstill... What it does is - it simply pulls the number of new users who signed up, have at least one "completed" payment, tm_completed is not empty (as it is only populated for completed payments), and (the embedded Select) that member has never had a "completed" payment before - meaning he's a new member (just because the system does rebills and whatnot, and this is the only way to sort of differentiate between an existing member who just got rebilled and a new member who got billed for the first time). Now, is there any possible way to optimize this query to use less resources or something, and to stop taking my mysql resources down on their knees...? Am I missing any info to clarify this any further? Let me know... EDIT: Here are the indexes already on that table: PRIMARY PRIMARY 46757 payment_id member_id INDEX 23378 member_id payer_id INDEX 11689 payer_id coupon_id INDEX 1 coupon_id tm_added INDEX 46757 tm_added, product_id tm_completed INDEX 46757 tm_completed, product_id

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  • How to insert zeros between bits in a bitmap?

    - by anatolyg
    I have some performance-heavy code that performs bit manipulations. It can be reduced to the following well-defined problem: Given a 13-bit bitmap, construct a 26-bit bitmap that contains the original bits spaced at even positions. To illustrate: 0000000000000000000abcdefghijklm (input, 32 bits) 0000000a0b0c0d0e0f0g0h0i0j0k0l0m (output, 32 bits) I currently have it implemented in the following way in C: if (input & (1 << 12)) output |= 1 << 24; if (input & (1 << 11)) output |= 1 << 22; if (input & (1 << 10)) output |= 1 << 20; ... My compiler (MS Visual Studio) turned this into the following: test eax,1000h jne 0064F5EC or edx,1000000h ... (repeated 13 times with minor differences in constants) I wonder whether i can make it any faster. I would like to have my code written in C, but switching to assembly language is possible. Can i use some MMX/SSE instructions to process all bits at once? Maybe i can use multiplication? (multiply by 0x11111111 or some other magical constant) Would it be better to use condition-set instruction (SETcc) instead of conditional-jump instruction? If yes, how can i make the compiler produce such code for me? Any other idea how to make it faster? Any idea how to do the inverse bitmap transformation (i have to implement it too, bit it's less critical)?

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  • "variable tracking" is eating my compile time!

    - by wowus
    I have an auto-generated file which looks something like this... static void do_SomeFunc1(void* parameter) { // Do stuff. } // Continues on for another 4000 functions... void dispatch(int id, void* parameter) { switch(id) { case ::SomeClass1::id: return do_SomeFunc1(parameter); case ::SomeClass2::id: return do_SomeFunc2(parameter); // This continues for the next 4000 cases... } } When I build it like this, the build time is enormous. If I inline all the functions automagically into their respective cases using my script, the build time is cut in half. GCC 4.5.0 says ~50% of the build time is being taken up by "variable tracking" when I use -ftime-report. What does this mean and how can I speed compilation while still maintaining the superior cache locality of pulling out the functions from the switch? EDIT: Interestingly enough, the build time has exploded only on debug builds, as per the following profiling information of the whole project (which isn't just the file in question, but still a good metric; the file in question takes the most time to build): Debug: 8 minutes 50 seconds Release: 4 minutes, 25 seconds

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  • most efficient method of turning multiple 1D arrays into columns of a 2D array

    - by Ty W
    As I was writing a for loop earlier today, I thought that there must be a neater way of doing this... so I figured I'd ask. I looked briefly for a duplicate question but didn't see anything obvious. The Problem: Given N arrays of length M, turn them into a M-row by N-column 2D array Example: $id = [1,5,2,8,6] $name = [a,b,c,d,e] $result = [[1,a], [5,b], [2,c], [8,d], [6,e]] My Solution: Pretty straight forward and probably not optimal, but it does work: <?php // $row is returned from a DB query // $row['<var>'] is a comma separated string of values $categories = array(); $ids = explode(",", $row['ids']); $names = explode(",", $row['names']); $titles = explode(",", $row['titles']); for($i = 0; $i < count($ids); $i++) { $categories[] = array("id" => $ids[$i], "name" => $names[$i], "title" => $titles[$i]); } ?> note: I didn't put the name = value bit in the spec, but it'd be awesome if there was some way to keep that as well.

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  • Is SQL DATEDIFF(year, ..., ...) an Expensive Computation?

    - by rlb.usa
    I'm trying to optimize up some horrendously complicated SQL queries because it takes too long to finish. In my queries, I have dynamically created SQL statements with lots of the same functions, so I created a temporary table where each function is only called once instead of many, many times - this cut my execution time by 3/4. So my question is, can I expect to see much of a difference if say, 1,000 datediff computations are narrowed to 100?

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  • Is this implementation truely tail-recursive?

    - by CFP
    Hello everyone! I've come up with the following code to compute in a tail-recursive way the result of an expression such as 3 4 * 1 + cos 8 * (aka 8*cos(1+(3*4))) The code is in OCaml. I'm using a list refto emulate a stack. type token = Num of float | Fun of (float->float) | Op of (float->float->float);; let pop l = let top = (List.hd !l) in l := List.tl (!l); top;; let push x l = l := (x::!l);; let empty l = (l = []);; let pile = ref [];; let eval data = let stack = ref data in let rec _eval cont = match (pop stack) with | Num(n) -> cont n; | Fun(f) -> _eval (fun x -> cont (f x)); | Op(op) -> _eval (fun x -> cont (op x (_eval (fun y->y)))); in _eval (fun x->x) ;; eval [Fun(fun x -> x**2.); Op(fun x y -> x+.y); Num(1.); Num(3.)];; I've used continuations to ensure tail-recursion, but since my stack implements some sort of a tree, and therefore provides quite a bad interface to what should be handled as a disjoint union type, the call to my function to evaluate the left branch with an identity continuation somehow irks a little. Yet it's working perfectly, but I have the feeling than in calling the _eval (fun y->y) bit, there must be something wrong happening, since it doesn't seem that this call can replace the previous one in the stack structure... Am I misunderstanding something here? I mean, I understand that with only the first call to _eval there wouldn't be any problem optimizing the calls, but here it seems to me that evaluation the _eval (fun y->y) will require to be stacked up, and therefore will fill the stack, possibly leading to an overflow... Thanks!

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  • Where is the bottleneck in this code?

    - by Mikhail
    I have the following tight loop that makes up the serial bottle neck of my code. Ideally I would parallelize the function that calls this but that is not possible. //n is about 60 for (int k = 0;k < n;k++) { double fone = z[k*n+i+1]; double fzer = z[k*n+i]; z[k*n+i+1]= s*fzer+c*fone; z[k*n+i] = c*fzer-s*fone; } Are there any optimizations that can be made such as vectorization or some evil inline that can help this code? I am looking into finding eigen solutions of tridiagonal matrices. http://www.cimat.mx/~posada/OptDoglegGraph/DocLogisticDogleg/projects/adjustedrecipes/tqli.cpp.html

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  • Optimizing Vector elements swaps using CUDA

    - by Orion Nebula
    Hi all, Since I am new to cuda .. I need your kind help I have this long vector, for each group of 24 elements, I need to do the following: for the first 12 elements, the even numbered elements are multiplied by -1, for the second 12 elements, the odd numbered elements are multiplied by -1 then the following swap takes place: Graph: because I don't yet have enough points, I couldn't post the image so here it is: http://www.freeimagehosting.net/image.php?e4b88fb666.png I have written this piece of code, and wonder if you could help me further optimize it to solve for divergence or bank conflicts .. //subvector is a multiple of 24, Mds and Nds are shared memory _shared_ double Mds[subVector]; _shared_ double Nds[subVector]; int tx = threadIdx.x; int tx_mod = tx ^ 0x0001; int basex = __umul24(blockDim.x, blockIdx.x); Mds[tx] = M.elements[basex + tx]; __syncthreads(); // flip the signs if (tx < (tx/24)*24 + 12) { //if < 12 and even if ((tx & 0x0001)==0) Mds[tx] = -Mds[tx]; } else if (tx < (tx/24)*24 + 24) { //if >12 and < 24 and odd if ((tx & 0x0001)==1) Mds[tx] = -Mds[tx]; } __syncthreads(); if (tx < (tx/24)*24 + 6) { //for the first 6 elements .. swap with last six in the 24elements group (see graph) Nds[tx] = Mds[tx_mod + 18]; Mds [tx_mod + 18] = Mds [tx]; Mds[tx] = Nds[tx]; } else if (tx < (tx/24)*24 + 12) { // for the second 6 elements .. swp with next adjacent group (see graph) Nds[tx] = Mds[tx_mod + 6]; Mds [tx_mod + 6] = Mds [tx]; Mds[tx] = Nds[tx]; } __syncthreads(); Thanks in advance ..

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  • Does the order of columns in a query matter?

    - by James Simpson
    When selecting columns from a MySQL table, is performance affected by the order that you select the columns as compared to their order in the table (not considering indexes that may cover the columns)? For example, you have a table with rows uid, name, bday, and you have the following query. SELECT uid, name, bday FROM table Does MySQL see the following query any differently and thus cause any sort of performance hit? SELECT uid, bday, name FROM table

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  • approximating log10[x^k0 + k1]

    - by Yale Zhang
    Greetings. I'm trying to approximate the function Log10[x^k0 + k1], where .21 < k0 < 21, 0 < k1 < ~2000, and x is integer < 2^14. k0 & k1 are constant. For practical purposes, you can assume k0 = 2.12, k1 = 2660. The desired accuracy is 5*10^-4 relative error. This function is virtually identical to Log[x], except near 0, where it differs a lot. I already have came up with a SIMD implementation that is ~1.15x faster than a simple lookup table, but would like to improve it if possible, which I think is very hard due to lack of efficient instructions. My SIMD implementation uses 16bit fixed point arithmetic to evaluate a 3rd degree polynomial (I use least squares fit). The polynomial uses different coefficients for different input ranges. There are 8 ranges, and range i spans (64)2^i to (64)2^(i + 1). The rational behind this is the derivatives of Log[x] drop rapidly with x, meaning a polynomial will fit it more accurately since polynomials are an exact fit for functions that have a derivative of 0 beyond a certain order. SIMD table lookups are done very efficiently with a single _mm_shuffle_epi8(). I use SSE's float to int conversion to get the exponent and significand used for the fixed point approximation. I also software pipelined the loop to get ~1.25x speedup, so further code optimizations are probably unlikely. What I'm asking is if there's a more efficient approximation at a higher level? For example: Can this function be decomposed into functions with a limited domain like log2((2^x) * significand) = x + log2(significand) hence eliminating the need to deal with different ranges (table lookups). The main problem I think is adding the k1 term kills all those nice log properties that we know and love, making it not possible. Or is it? Iterative method? don't think so because the Newton method for log[x] is already a complicated expression Exploiting locality of neighboring pixels? - if the range of the 8 inputs fall in the same approximation range, then I can look up a single coefficient, instead of looking up separate coefficients for each element. Thus, I can use this as a fast common case, and use a slower, general code path when it isn't. But for my data, the range needs to be ~2000 before this property hold 70% of the time, which doesn't seem to make this method competitive. Please, give me some opinion, especially if you're an applied mathematician, even if you say it can't be done. Thanks.

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  • Script Speed vs Memory Usage

    - by Doug Neiner
    I am working on an image generation script in PHP and have gotten it working two ways. One way is slow but uses a limited amount of memory, the second is much faster, but uses 6x the memory . There is no leakage in either script (as far as I can tell). In a limited benchmark, here is how they performed: -------------------------------------------- METHOD | TOTAL TIME | PEAK MEMORY | IMAGES -------------------------------------------- One | 65.626 | 540,036 | 200 Two | 20.207 | 3,269,600 | 200 -------------------------------------------- And here is the average of the previous numbers (if you don't want to do your own math): -------------------------------------------- METHOD | TOTAL TIME | PEAK MEMORY | IMAGES -------------------------------------------- One | 0.328 | 540,036 | 1 Two | 0.101 | 3,269,600 | 1 -------------------------------------------- Which method should I use and why? I anticipate this being used by a high volume of users, with each user making 10-20 requests to this script during a normal visit. I am leaning toward the faster method because though it uses more memory, it is for a 1/3 of the time and would reduce the number of concurrent requests.

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