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  • R: Why does read.table stop reading a file?

    - by Mike Dewar
    I have a file, called genes.txt, which I'd like to become a data.frame. It's got a lot of lines, each line has three, tab delimited fields: mike$ wc -l genes.txt 42476 genes.txt I'd like to read this file into a data.frame in R. I use the command read.table, like this: genes = read.table( genes_file, sep="\t", na.strings="-", fill=TRUE, col.names=c("GeneSymbol","synonyms","description") ) Which seems to work fine, where genes_file points at genes.txt. However, the number of lines in my data.frame is significantly less than the number of lines in my text file: > nrow(genes) [1] 27896 and things I can find in the text file: mike$ grep "SELL" genes.txt SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L don't seem to be in the data.frame > grep("SELL",genes$GeneSymbol) integer(0) it turns out that genes = read.delim( genes_file, header=FALSE, na.strings="-", fill=TRUE, col.names=c("GeneSymbol","synonyms","description"), ) works just fine. Why does read.delim work when read.table not? If it's of use, you can recreate genes.txt using the following commands which you should run from a command line curl -O ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz gzip -cd gene_info.gz | awk -Ft '$1==9606{print $3 "\t" $5 "\t" $9}' > genes.txt be warned, though, that gene_info.gz is 101MBish.

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  • Rails flash hash violation of MVC?

    - by user94154
    I know Rails' flash hash is nothing new, but I keep running into the same problem with it. Controllers should be for business logic and db queries, not formatting strings for display to the user. But the flash hash is always set in the controller. This means that I need to hack and work around Rails to use Helpers that I made to format strings for the flash hash. Is this just a pragmatic compromise to MVC or am I missing something here? How do you deal with this problem? Or do you not even see it as one?

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  • Manipulate Page Theme Programatically

    - by Aren B
    I've got the following Setup in my Theme: \App_Themes\Default\StyleSheet.css \App_Themes\Default\PrintStyleSheet.css The PrintStyleSheet.css file has a set of printing css rules set in them wrapped in an @Media Print { } block. I need a way to programmatically remove the PrintStyleSheet.css from the list of css files for ASP.NET to inject based on some flags. (Some instances we want to print the site verbatim without custom formatting). I know i could build a seperate theme without the PrintStyleSheet.css in it and switch the theme programmatically, however this would introduce duplication of my master stylesheet which is not acceptable. Any ideas?

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  • xerces serialization in Java 6

    - by Jim Garrison
    In Java 6, the entire xerces XML parser/serializer implementation is now in the Java runtime (rt.jar). The packages have been moved under the com.sun.* namespace, which places them off-limits for explicit reference within client code. This is not a problem when using the parser, which is instantiated via javax API-defined factories. However, our code also uses xerces serialization (org.apache.xml.serialize.* ). AFAICT, there are no javax.xml API-defined factories for creating instances of Serializer and OutputFormat. This seems to imply that the only way to get one is to explicitly call the com.sun.org.apache.xml.serialize.* APIs. I've found the serialization classes in javax.xml.stream, but they don't seem to provide any output-formatting control like the xerces OutputFormat class. Question: Is there a way to access the xerces serialization functionality (which is in rt.jar) via a javax standard API, without including xerces.jar and also without explicitly instantiating com.sun.* classes? If not, is there an javax API-compliant way to achieve the same effect?

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  • Multiline for WPF TextBox

    - by baron
    I am developing a app for sending some feedback. Basically i'm trying to make a TextBox for comments, but i'm used to the WinForms MultiLine=true. I've set MinLines to 3, which is getting there, but preferably i'd like if user is able to type wherever in this block, like press enter and do dot points sort of thing - like: - Item 1 blah - Item 2 blahlb lahbvl d But at the moment the text all stays on one line. - Item 1 blah - Item 2 blahb blahb blah This comments will then help fill the body of an email which is sent. It may be pointless if I can't easily keep the same formatting when putting this string into the email body string (so that it looks like it does when sent as it does when typed). Can I achieve what I'm after or do I have to leave it as all text on one line?

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  • .NET Excel Interop - Why aren't my Footers displaying in my printed output file?

    - by Ryan
    I'm working with C# and Office 2007's Excel Interop API. I'm opening an Excel file, applying some formatting and then sending it to the printer. I've got a problem, though. The Footer text doesn't appear to be printing. If I check the PageSetup.RightFooter property, I can see the expected Page Number in the Footer. That Page Number doesn't appear anywhere on the printed output sheet. When I print using Excel, though, they appear. Does anyone know why my Footer text is not appearing? Here's my code. Pastebin of my C# code

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  • InvalidOperationException When XML Serializing Inherited Class

    - by Nick
    I am having an issue serializing a c# class to an XML file that has a base class... here is a simple example: namespace Domain { [Serializable] public class ClassA { public virtual int MyProperty { get; set; } } } namespace Derived { public class ClassA : Domain.ClassA { public override int MyProperty { get { return 1; } set { /* Do Nothing */ } } } } When I attempt to serialize an instance of Derived.ClassA, I receive the following exception: InvalidOperationException(Types 'Domain.ClassA' and 'Derived.ClassA' both use the XML type name 'ClassA', from the namespace ". Use XML attributes to specify a unique XML name and/or namespace for the type.) The problem is that I want to create a single base class that simply defines the structure of the XML file, and then allow anyone else to derive from that class to insert business rules, but that the formatting will come through from the base. Is this possible, and if so, how do I attribute the base class to allow this?

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  • iphone: custom UITableViewCell taller than the default cell view.

    - by Luc
    Hello, I'm creating an application that consists of a ListView with 5 rows: - 1st one containing a graph - 2nd to 5th rows containing some data with the same formatting. I have created 2 classes: GraphCustomViewCell and DataCustomViewCell. Depending upon the position of the cell I load the correct CustomCell with: NSArray *topLevelObjects = [[NSBundle mainBundle] loadNibNamed:@"GraphCustomViewCell" owner:nil options:nil]; for(id currentObject in topLevelObjects) { if([currentObject isKindOfClass:[GraphCustomViewCell class]]) { cell = (GraphCustomViewCell *)currentObject; break; } } That works fine except that the first row, the one corresponding to the graph, is bigger (in height) that the 4 other rows, and as a results it hides the 3 first other rows. Is there any option in the table view that enables the custom cell to expand the default cells ? I'd like that the 5 rows (graph + 4 data rows) to fit the entire screen (480 - tabbar's height). Thanks a lot for your help. Regards, Luc

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  • Does anyone change the Visual Studio default bracing style in C# - Is there a standard?

    - by El Ronnoco
    I find the default bracing style a bit wasteful on line count eg... function foo() { if (...) { ... } else { ... } } would, if I was writing in JavaScript for example be written like... function foo() { if (...) { ... } else { ... } } ...which I understand may also not be to peoples' tastes. But the question(s) is/are do you turn off the VS formatting style and use your own rules? What is the opinion of this in the industry when many people are working on the same code-base? Is it better just to stick to the default just for simplicity/uniformity?

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  • Unicode escape characters not being read by XmlReader

    - by craigmoliver
    I've got an XML document that I'm importing into an XmlReader that has some unicode formatting I need to preserve. I'm preserving the whitespace but it's dropping the encoded #x2028 which I assume should be expressed as a line break. Here's my code: var settings = new XmlReaderSettings { ProhibitDtd = false, XmlResolver = null, IgnoreWhitespace = false }; var reader = XmlReader.Create(new StreamReader(fu.PostedFile.InputStream), settings); var document = new XmlDocument {PreserveWhitespace = true}; document.Load(reader); return document;

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  • How to use ASP.NET Authorization Yet Permit Access to .css Files?

    - by Chaitanya
    <authentication mode="Forms"> <forms loginUrl="Login.aspx"/> </authentication> <authorization> <deny users="?"/> </authorization> I am using forms authentication, and when i place the arguments cited above, the css formatting I have done for the whole document is not being implemented, it's vanishing. what should i be doing so that the CSS remains intact.

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  • mediawiki markup equivalent of WMD editor?

    - by Justin Grant
    Anyone have a recommendation for an editor like the WMD editor, but using MediaWiki markup instead of Markdown? Our site is already using MediaWiki markup but we want a slicker editor without changing markup completely. Requirements include: live preview of formatted text underneath the markup you're typing a toolbar for common formatting (bold, italic, links, bullets, numbered-list, code, etc) keyboard shortcuts for each toolbar button (e.g. CTRL+B for bold) Undo/redo via keyboard shortcuts (CTRL+Z/CTRL+Y) or toolbar buttons works well in the usual set of popular browsers (including IE6!) open-source would be preferred

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  • Seeking a GUI auto-format feature for T-SQL

    - by dvanaria
    Is there a freely available GUI tool that will allow interaction with Microsoft SQL Server (via T-SQL) that provides an auto-format feature? I constantly find myself writing queries in SQL Query Analyzer (Microsoft’s standard GUI tool for T-SQL) and cutting/pasting the whole thing into SQLyog (a GUI tool for MySQL), where I can press F12 and have it reformatted into an easily readable, industry standard format. I then cut/paste this back into Query Analyzer to execute. I do this all the time at work and haven’t been able to find an alternative. I realize that SQLyog is no longer free software, but what I’m looking for is a specific alternative to a MS SQL Server interface (with auto-formatting). Thanks in advance for your help.

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  • Jasper Reports Crosstab Query

    - by Sean McDaid
    I'm using Jasper Reports/iReports crosstabs to create a matrix of student and results. So for example Jim is doing subjects A, B, C and Sally is doing A, C What I want is something like: Subj-A Subj-B Subj-C Jim P M D Sally D D But as my SQL orders by name then subject I get: Subj-A Subj-B Subj-C Subj-A Subj-C Jim P M D Sally D D As you can see in the above the results are correct but the formatting is woeful. Is there anyway I can generate the reports to use names and subject only once and filling in the values from here? This probably isn't clear.

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  • Searching a table MySQL & PHP.

    - by S1syphus
    I want to be able to search through a MySQL table using values from a search string, from the url and display the results as an XML output. I think I have got the formatting and declaring the variables from the search string down. The issue I have is searching the entire table, I've looked over SO for previous answers, and they all seem to have to declare each column in the table to search through. So for example my database layout is as follows: **filesindex** -filename -creation -length -wall -playlocation First of all would the following be appropriate: $query = "SELECT * FROM filesindex WHERE filename LIKE '".$searchterm."%' UNION SELECT * FROM filesindex WHERE creation LIKE '".$searchterm."%' UNION SELECT * FROM filesindex WHERE length LIKE '".$searchterm."%' UNION SELECT * FROM filesindex WHERE wall LIKE '".$searchterm."%' UNION SELECT * FROM filesindex WHERE location LIKE '".$searchterm."%'"; Or ideally, is there an easier way that involves less hardcoding to search a table. Any ideas? Thanks

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  • Factorial Algorithms in different languages

    - by Brad Gilbert
    I want to see all the different ways you can come up with, for a factorial subroutine, or program. The hope is that anyone can come here and see if they might want to learn a new language. Ideas: Procedural Functional Object Oriented One liners Obfuscated Oddball Bad Code Polyglot Basically I want to see an example, of different ways of writing an algorithm, and what they would look like in different languages. Please limit it to one example per entry. I will allow you to have more than one example per answer, if you are trying to highlight a specific style, language, or just a well thought out idea that lends itself to being in one post. The only real requirement is it must find the factorial of a given argument, in all languages represented. Be Creative! Recommended Guideline: # Language Name: Optional Style type - Optional bullet points Code Goes Here Other informational text goes here I will ocasionally go along and edit any answer that does not have decent formatting.

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  • Can a user-chosen image be inserted directly into a JEditorPane?

    - by JIM
    What I am trying to do is open up a JFilechooser that filters jpeg,gif and png images, then gets the user's selection and inserts it into the JEditorPane. Can this be done? or am i attempting something impossible? Here is a sample of my program.(insert is a JMenuItem and mainText is a JEditorPane) insert.addActionListener(new ActionListener(){ public void actionPerformed(ActionEvent e){ JFileChooser imageChooser = new JFileChooser(); imageChooser.setFileFilter(new FileNameExtensionFilter("Image Format","jpg","jpeg","gif","png")); int choice = imageChooser.showOpenDialog(mainText); if (choice == JFileChooser.APPROVE_OPTION) { mainText.add(imageChooser.getSelectedFile()); } } }); What i tried to do is use the add method, i know it's wrong but just to give you an idea of what i'm trying to do. Before you complain, i'm sorry about the code formatting, i don't really know all the conventions of what is considered good or bad style. Thank you very much.

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  • Korn shell wraparound

    - by allenratcliff
    Okay, I'm sure this is simple but it is driving me nuts. I recently went to work on a program where I've had to step back in time a bit and use Redhat 9. When I'm typing on the command line from a standard xterm running Korn shell, when I reach the end of the line the screen slides to the right (cutting off the left side of my command) instead of wrapping the text around to a new line. This makes things difficult for me because I can't easily copy and paste from the previous command straight from the command line. I have to look at the history and paste the command from there. In case you're wondering, I do a lot of command-line awk scripts that cause the line to get quite long. Is there a way to force the command line to wrap instead of shifting visibility to the right side of the command I'm typing? I've poured through man page options with no luck. I'm running XFree86 4.2.99.903(174) and KSH 5.2.14. Thanks.

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  • vb.net - how do I parse a percentage value from a grid cell?

    - by Bob Palin
    I'm trying to parse a formatted percentage value back from a datagridviewcell that has been set with the "P" formatter: double percent = 0.96 cell.value = percent.tostring("p") gives me a displayed value of 96 % which is what I want. Now what I'm looking for is something like what is provided for the other formatting strings - NumberStyles.HexNumber, Currency etc so that I can do this double percent= double.parse( cell.value, NumberStyles.Percent ) which would give me a percent value of .96 I have scoured the .net documentation but can't find any sort of AllowPercent style like the others - is there one? Bob Palin p.s. I see there is another question here like this and tried to expand on it in that thread, but was deleted by a moderator and told to post a new question.

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  • Why doesn't a LinkButton work with a table as it's content?

    - by Telos
    Using ASP.NET 3.5, you can create a LinkButton then define content inside of it. It works fine if I have div tags or any kind of text or anything, but if I use a table the click doesn't actually post back for some reason. This should take you to google (you'll get an error there but it should still go) for instance: <asp:LinkButton ID="lbTest" PostBackUrl="http://www.google.com" runat="server"> <table> <tr> <td>Test</td> <td>col2</td> <td>col3</td> </tr> </table> </asp:LinkButton> I could work around it by building a "table" with divs I guess, but I hate formatting with divs.

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  • Cross compiling from MinGW on Fedora 12 to Windows - console window?

    - by elcuco
    After reading this article http://lukast.mediablog.sk/log/?p=155 I decided to use mingw on linux to compile windows applications. This means I can compile, test, debug and release directly from Linux. I hacked this build script which will cross compile the application and even package it in a ZIP file. Note that I am using out of source builds for QMake (did you even know this is supported? wow...). Also note that the script will pull the needed DLLs automagically. Here is the script for you all internets to use and abuse: #! /bin/sh set -x set -e VERSION=0.1 PRO_FILE=blabla.pro BUILD_DIR=mingw_build DIST_DIR=blabla-$VERSION-win32 # clean up old shite rm -fr $BUILD_DIR mkdir $BUILD_DIR cd $BUILD_DIR # start building QMAKESPEC=fedora-win32-cross qmake-qt4 QT_LIBINFIX=4 config=\"release\ quiet\" ../$PRO_FILE #qmake-qt4 -spec fedora-win32-cross make DLLS=`i686-pc-mingw32-objdump -p release/*.exe | grep dll | awk '{print $3}'` for i in $DLLS mingwm10.dll ; do f=/usr/i686-pc-mingw32/sys-root/mingw/bin/$i if [ ! -f $f ]; then continue; fi cp -av $f release done mkdir -p $DIST_DIR mv release/*.exe $DIST_DIR mv release/*.dll $DIST_DIR zip -r ../$DIST_DIR.zip $DIST_DIR The compiled binary works on the Windows7 machine I tested. Now to the questions: When I execute the application on Windows, the theme is not the Windows7 theme. I assume I am missing a style module, I am not really sure yet. The application gets a console window for some reason. The second point (the console window) is critical. How can I remove this background window? Please note that the extra config lines are not working for me, what am I missing there?

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  • Ruby number_to_currency displays a totally wrong number!

    - by SueP
    Greetings! I’m an old Delphi programmer making the leap to the Mac, Ruby, Rails, and web programming in general. I’m signed up for the Advanced Rails workshop at the end of the month. In the meantime, I’ve been working on porting a mission-critical (of course) app from Delphi to RAILS. It feels like I’ve spent most of the past year with my head buried in a book or podcast. Right now, I’ve hit a major issue and I’m tearing my hair out. I literally don’t know where to go with this, I desperately don’t want to deploy with this bug, and I’m feeling a bit frantic. (The company database is currently running on an ancient XP box that’s looking rustier by the day.) So, I set up a test database that shows the problem. I’m running: OS/X 10.6.3 Rails 2.3.5 ruby 1.8.7 (2009-06-08 patchlevel 173) [universal-darwin10.0] MySQL 5.1.38-log via socket MySQL Client Version 5.1.8 ActiveRecord::Schema.define(:version => 20100406222528) do create_table “money”, :force => true do |t| t.decimal “amount_due”, :precision => 10, :scale => 2, :default => 0.0 t.decimal “balance”, :precision => 10, :scale => 2, :default => 0.0 t.text “memofield” t.datetime “created_at” t.datetime “updated_at” end The index view is right out of the generator, slightly modified to add the formatting that's breaking on me. Listing money <table> <tr> <th>Amount</th> <th>Amount to_s </th> <th>Balance to $</th> <th>Balance with_precision </th> <th>Memofield</th> </tr> <% @money.each do |money| %> <tr> <td><%=h money.amount_due %></td> <td><%=h money.amount_due.to_s(‘F’) %></td> <td><%=h number_to_currency(money.balance) %></td> <td><%=h number_with_precision(money.balance, :precision => 2) %></td> <td><%=h money.memofield %></td> <td><%= link_to ‘Show’, money %></td> <td><%= link_to ‘Edit’, edit_money_path(money) %></td> <td><%= link_to ‘Destroy’, money, :confirm => ‘Are you sure?’, :method => :delete %></td> </tr> *<% end %> *</table> <%= link_to ‘New money’, new_money_path %> This seemed to work pretty well. Then I started testing with production data and hit a major problem with number_to_currency. The number in the database is: 10542.28, I verified it with the MySQL Query Browser. RAILS will display this as 10542.28 unless I call number_to_currency, then that number is displayed as: $15422.80 The error seems to happen with any number between 10,000.00 and 10,999.99 So far, I haven’t seen it outside of that range, but I obviously haven’t tested everything. I guess my workaround is to remove number_to_currency, but that leaves the views looking really sloppy and unprofessional. The formatting is messed up, things don’t line up properly and I can’t force the display to 2 decimal places. I’m seriously hoping there is an easy fix for this. I can’t imagine this being a widespread problem. It would affect so many people that someone would have fixed it! But I don’t know where to go from here. I’d desperately like some help. (Later – number_with_precision fails the same way number_to_currency does.) Sue Petersen

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  • Is is better to store serialized data or raw html in mysql?

    - by Yegor
    I de-normalized my database, since the application was crawling otherwise, and Im storing a list of categories for each item in the DB as a raw html version, and simply echoing it out in my design. Each category is actually a link, which is include a tag. Naturally, this is abit of a pain, especially if I want to change the look of how the category links are displayed, since I gotta update all the old cached entries. What if I were to store this data as a serialized array instead, and simply unserialize it, and then apply formatting to it in php. Would there be a significant performance decrease over simply echoing out the raw html?

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  • RDLC item width is dynamic and causing extra pages to be generated (image included)?

    - by Paul Mendoza
    I'm trying to format an RDLC report file in Visual Studio 2008 and I am having a formatting issue. I have a list at the bottom that contains a matrix that expands horizontally to the right. That pink box is just to visualize the problem I'm having. When the report is rendered the matrix expands and instead of filling the pink box with the matrix is pushes the space in the pink box to the right resulting in an extra page when printing the reports. One solution would be to shrink the pink box to be the size of the matrix which I've done. But then when the matrix grows the fields at the top of the report get pushed to the right by the same amount as the growth of the matrix. Can someone please let me know what they think the solution would be? Thank you!

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  • Why Date Format in ASP NET MVC Differs when used inside Html Helper?

    - by Marcio Gabe
    Hi, I just came across a very interesting issue. If I use ViewData to pass a DateTime value to the view and then display it inside a textbox, even though I'm using String.Format in the exact same manner, I get different formatting results when using the Html.TextBox helper. <%= Html.TextBox("datefilter", String.Format("{0:d}", ViewData["datefilter"]))%> <input id="test" name="test" type="text" value="<%: String.Format("{0:d}", ViewData["datefilter"]) %>" /> The above code renders the following html: <input id="datefilter" name="datefilter" type="text" value="2010-06-18" /> <input id="test" name="test" type="text" value="18/06/2010" /> Notice how the fist line that uses the Html helper produces the date format in one way while the second one produces a very different output. Any ideas why? Note: I'm currently in Brazil, so the standard short date format here is dd/MM/yyyy.

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