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• argument order in cygwin gcc 4.3 matters when linking with glib-2.0

  - by SetJmp

  I am trying to compile code that works on os x and linux using cygwin. However, I am finding that the argument order to gcc gives unanticipated results. For example, the following fails: gcc -std=gnu99 `pkg-config --libs glib-2.0 --cflags glib-2.0` nb-learn.c but the following works: gcc -std=gnu99 nb-learn.c `pkg-config --libs glib-2.0 --cflags glib-2.0` Can someone explains how this works? Also, are there techniques or code I can look at for getting autoconf to change the argument order depending on the platform? Thanks, SetJmp (gcc 4.3.4)

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• Are hash values globally unqiue

  - by Wololo

  I want to generate a hash code for a file. Using C# I would do something like this then store the value in a database. byte[] b = File.ReadAllBytes(@"C:\image.jpg"); string hash = ComputeHash(b); Now, if i use say a Java program that implements the same hashing alogorithm (Md5), can i expect the hash values to be the equal to the value generated in C#? What if i execute the java program from different environments, Windows, Linux or Mac?

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• How do I determine which C/C++ compiler to use?

  - by Adam Siddhi

  Greetings, I am trying to figure out which C/C++ compiler to use. I found this list of C/C++ compilers at Wikipedia: http://en.wikipedia.org/wiki/List_of_compilers#C.2FC.2B.2B_compilers I am fairly certain that I want to go with an open source compiler. I feel that if it is open source then it will be a more complete compiler since many programmer perspectives are used to make it better. Please tell me if you disagree. I should mention that I plan on learning C/C++ mainly to program 2D/3D game applications that will be compatible with Windows, Linux, MAC and iPhone operating systems. I am currently using Windows Vista x64 OS. Thanks, Adam

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• Balanced File Distribution from server to client

  - by Abhinav

  To design a client-server code in LINUX where server will send the file equally to its entire client connected(all not at a time). Suppose 15 files are there, client1 makes a connection, server starts sending files to it. After 4 files a new connection comes the first client gets halted (not terminated) and client2 start getting the file. After 2 files another connection comes. Server starts sending file to client3. after sending 3[2(client2)+1] files, server resumes client2.then client2 & client3 goes on till file count reaches 4.then client1 wakeup & remaining 3 files are transferred to each 3 clients. File's name are pre written in a file from where server reads it(not a big deal)

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• Executing shell commands from Java

  - by Lauren?iu Dascalu

  Hello, I'm trying to execute a shell command from a java application, on the GNU/Linux platform. The problem is that the script, that calls another java application, never ends, although it runs successfully from bash. I tried to debug it: (gdb) bt #0 0xb773d422 in __kernel_vsyscall () #1 0xb7709b5d in pthread_join (threadid=3063909232, thread_return=0xbf9cb678) at pthread_join.c:89 #2 0x0804dd78 in ContinueInNewThread () #3 0x080497f6 in main () I tried with: ProcessBuilder(); and Runtime.getRuntime().exec(cmd); Looks like it waits for something to finish. Any ideas? Thanks, Lauren?iu

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• Memory in Eclipse

  - by user247866

  I'm getting the java.lang.OutOfMemoryError exception in Eclipse. I know that Eclipse by default uses heap size of 256M. I'm trying to increase it but nothing happens. For example: eclipse -vmargs -Xmx16g -XX:PermSize=2g -XX:MaxPermSize=2g I also tried different settings, using only the -Xmx option, using different cases of g, G, m, M, different memory sizes, but nothing helps. Does not matter which params I specify, the heap exception is thrown at the same time, so I assume there's something I'm doing wrong that Eclipse ignores the -Xmx parameter. I'm using a 32GB RAM machine and trying to execute something very simple such as: double[][] a = new double[15000][15000]; It only works when I reduce the array size to something around 10000 on 10000. I'm working on Linux and using the top command I can see how much memory the Java process is consuming; it's less than 2%. Thanks!

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• Who Knows AppWeb HTTP Server And It's Embedded PHP?

  - by Andi

  Hi all, on my search for a fast but comfortable web server I dropped into the homepage of EmbedThis(TM) AppWeb(TM) HTTP server. This one has 2 licencse models, GPLv2 and a commercial one with support. On the first view it looks good: the footprint is not too big, it is fast and it has a lot of configuration otions. The most important thing would be a fast PHP execution using a built-in PHP library. Unfortunately this PHP library doesn't include every option, especially "gettext" which one I need for I18N. My target platform is Linux on an embedded device with an ARM based CPU. Does anybody have experiences with the issues mentioned above? Kind regards, Andi

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• django setup with Apache, mod_wsgi and cx_Oracle

  - by pablo

  Hi, I need to setup the same django project on several identical servers. Details: - os - free edition of oracle enterprise linux 5 - Apache / mod_wsgi - python - custom python2.6 installation - oracle db with cx_Oracle What is the simplest way to set it up? Would you recommend creating a system user for the django project and use daemon mode? What type of user and what privileges does it need? Can I set ORACLE_HOME, LD_LIBRARY_PATH, PATH=$ORACLE_HOME/bin:$PATH for this user? Would you use a virtualenv for cx_Oracle? Can I somehow put the python2.6 inside the virtualenv so it will portable to other servers? Thanks

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• Are fopen/fread/fgets PID-safe in C ?

  - by Jane

  Various users are browsing through a website 100% programmed in C (CGI). Each webpage uses fopen/fgets/fread to read common data (like navigation bars) from files. Would each call to fopen/fgets/fread interefere with each other if various people are browsing the same page ? If so, how can this be solved in C ? (This is a Linux server, compiling is done with gcc and this is for a CGI website programmed in C.) Example: FILE *DATAFILE = fopen(PATH, "r"); if ( DATAFILE != NULL ) { while ( fgets( LINE, BUFFER, DATAFILE ) ) { /* do something */ } }

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• more details in Jboss console ?

  - by worldpython

  Dear all, I am new to JBOSS 4.2. when I start the server on CentOS 5.4(final). it give me simple log in its console. How I can show deployment errors, messages that wars print in Jboss log ? Thanks in advance 15:46:24,207 INFO [Server] Server Log Dir: /home/mebada/jad/jboss-4.2.3.GA/server /nops01/log 15:46:24,207 INFO [Server] Server Temp Dir: /home/mebada/jad/jboss-4.2.3.GA/server /nops01/tmp 15:46:24,208 INFO [Server] Root Deployment Filename: jboss-service.xml 15:46:25,849 INFO [ServerInfo] Java version: 1.6.0,Sun Microsystems Inc. 15:46:25,849 INFO [ServerInfo] Java VM: OpenJDK Client VM 1.6.0-b09,Sun Microsystems Inc. 15:46:25,849 INFO [ServerInfo] OS-System: Linux 2.6.18-164.el5,i386 15:46:26,674 INFO [Server] Core system initialized 15:46:41,567 INFO [WebService] Using RMI server codebase: http://127.0.0.1:8083/ 15:46:41,569 INFO [Log4jService$URLWatchTimerTask] Configuring from URL: resource:jboss-log4j.xml

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• Database solutions for storing/searching EXIF data

  - by webdestroya

  I have thousands of photos on my site (each with a numeric PhotoID) and I have EXIF data (photos can have different EXIF tags as well). I want to be able to store the data effectively and search it. Some photos have more EXIF data than others, some have the same, so on.. Basically, I want to be able to query say 'Select all photos that have a GPS location' or 'All photos with a specific camera' I can't use MySQL (tried it, it doesn't work). I thought about Cassandra, but I don't think it lets me query on fields. I looked at SimpleDB, but I would rather: not pay for the system, and I want to be able to run more advanced queries on the data. Also, I use PHP and Linux, so it would be awesome if it could interface nicely to PHP. Any ideas?

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• Using typedefs from a template class in a template (non-member) function

  - by atomicpirate

  The following fails to compile (with gcc 4.2.1 on Linux, anyway): template< typename T > class Foo { public: typedef int FooType; }; void ordinary() { Foo< int >::FooType bar = 0; } template< typename T > void templated() { Foo< T >::FooType bar = T( 0 ); } int main( int argc, char **argv ) { return 0; } The problem is with this line: Foo< T >::FooType bar = 0; ...and the compiler makes this complaint: foo.c: In function ‘void templated()’: foo.c:22: error: expected `;' before ‘bar’ Normally one sees this when a type hasn't been declared, but as far as I can tell, Foo< T ::FooType should be perfectly valid inside templated().

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• C++: ifstream::getline problem

  - by Jay

  I am reading a file like this: char string[256]; std::ifstream file( "file.txt" ); // open the level file. if ( ! file ) // check if the file loaded fine. { // error } while ( file.getline( string, 256, ' ' ) ) { // handle input } Just for testing purposes, my file is just one line, with a space at the end: 12345 My code first reads the 12345 successfully. But then instead of the loop ending, it reads another string, which seems to be a return/newline. I have saved my file both in gedit and in nano. And I have also outputted it with the Linux cat command, and there is no return on the end. So the file should be fine. Why is my code reading a return/newline? Thanks.

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• 8 byte Integer with Doctrine and PHP

  - by Rufinus

  Hi, the players: 64bit linux with php 5 (ZendFramework 1.10.2) PostgreSQL 7.3 Doctrine 1.2 Via a Flash/Flex client i get an 8byte integer value. the field in the database is an BIGINT (8 byte) PHP_INT_SIZE show that system supports 8byte integer. printing out the value in the code as it is and as intval() leads to this: Plain: 1269452776100 intval: 1269452776099 float rounding failure ? but what really driving me nuts is ERROR: invalid input syntax for integer: "1269452776099.000000"' when i try to use it in a query. like: Doctrine_Core::getTable('table')->findBy('external_id',$external_id); or Doctrine_Core::getTable('table')->findBy('external_id',intval($external_id)); How i am supposed to handle this ? or how can i give doctrine a floating point number which it should use on a bigint field ? Any help is much appreciated! TIA

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• Active C++ project to contribute to

  - by Joseph Pond

  I am a self-taught c++/java programmer (I will be starting uni in August though!). I have worked on one project in which I was part of an active team. I really felt I learnt the most and gained a lot of experience while working with the team. Unfortunately it was a small closed source project which has recently taken a slumber. I'm looking for some active open source c++ projects which I could contribute to (preferably that are mainly developed on the linux platform). The other project I worked on was a video game, however, I would like to contribute to a project which has a functional purpose (other than to amuse). Any suggestions on possible projects?

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• Configuration Log4j: ConsoleAppender to System.err?

  - by Gerard

  I saw that one of our tools uses a ConsoleAppender to System.err next to System.out in it's log4j configuration. Fragments of the configuration: <appender name="CONSOLE" class="org.apache.log4j.ConsoleAppender"> <!-- Log to STDOUT. --> <param name="Target" value="System.out"/> .... <appender name="CONSOLE_ERR" class="org.apache.log4j.ConsoleAppender"> <!-- Log to STDERR. --> <param name="Target" value="System.err"/> In Eclipse this results in double messages to the console, so I believe that is of no use, right? On the Linux server I see only one message to the PuTTY console, so where would that System.err message go to?

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• Duplicate a Drupal installation from one server to another

  - by irot

  Hello. I have been developing a Drupal 6 site on my PC using XAMPP. I'm done now, and everything looks peachy. Problem is, I need to put all my content (including custom modules and themes) up onto a staging server which only has a fresh Drupal 6 install on it. I can't imagine having to set up all my custom content types and whatnot all over again on the staging server. So I ask, how does one go about doing what I need to do? Which is essentially duplicating my Drupal install from my PC, to the staging server. The staging server is running Linux, and I develop on a Windows PC, if that helps. Thanks in advance.

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• No network packets sent immediately after quick physical disconnect and reconnect.

  - by Hans

  I am using Boost's ASIO libraries to establish a UDP connection to a remote server. To make sure the connection is active, every second a keep-alive message is sent to the server. I have noticed that if I unplug the network cable and reinsert it quickly, the first 2 or 3 keep-alive messages after the reinsert are never sent. I tested this by running wire-shark on the server. I have seen it take up to 5 seconds before the client starts sending out network traffic again. The client is running under Linux (2.6.2), if that helps.

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• Boost 1.4.0, "assert" identifier not found

  - by Adam Haile

  I'm trying to compile an old project that was originally written for linux on windows. It uses boost 1.4.0, and whenever I compile it throws error C3961: "assert" : identifier not found. I'm using Visual Studio 208 SP1 When I drill down into assert.hpp it includes this: # include <assert.h> // .h to support old libraries w/o <cassert> - effect is the same # define BOOST_ASSERT(expr) assert(expr) BOOST_ASSERT is actually what's failing, and VS doesn't seem to recognize assert() even though assert.h is obviously included. As far as I can tell, all the fails are in files that are part of boost, not my own code, but it throws about 1200 of them. Any ideas how to fix this?

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• Why do my MIPS crosscompiler works like this for NOT operation?

  - by Mazicky

  Hello, I setup my crosscompiler for making MIPS instructions. And it compiles C code well. but I found a weird thing for NOT operations. if i make code like int a; func(!a); and i studied MIPS instructions with text book that says "MIPS converts NOT operation to 'nor with zero'" So i thought it would converted like nor a a $zero but my compiler converts xori a a 0x0 sltu a 1 /////////////////////////////////////// i compiled the code with 'myaccount mipsel-unknown-linux-gnu-gcc -S myfilename.c' and it makes myfilename.s file.. what am i missing??

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• MacBook Pro Late 2009 SATA Resets, Slowness (Is my motherboard dying on both machines?)

  - by A Student at a University

  My MacBook Pro runs slower the longer it's on. I am getting kernel warnings. Some, but not all, resets correlate with AC power connects and disconnects. I don't think the warnings do. (How do I tell?) What are these errors? What causes them? Can this damage the drive or corrupt data? What is it seeing that motivates these? 02:37:16[ 0.791992] ahci 0000:00:0b.0: PCI INT A -> Link[LSI0] -> GSI 20 (level, low) -> IRQ 20 02:37:16[ 0.792047] ahci 0000:00:0b.0: irq 43 for MSI/MSI-X 02:37:16[ 0.792053] ahci 0000:00:0b.0: controller can't do PMP, turning off CAP_PMP 02:37:16[ 0.792104] ahci 0000:00:0b.0: AHCI 0001.0200 32 slots 6 ports 1.5 Gbps 0x3 impl IDE mode 02:37:16[ 0.792107] ahci 0000:00:0b.0: flags: 64bit ncq sntf pm led pio slum part boh 02:37:16[ 0.792111] ahci 0000:00:0b.0: setting latency timer to 64 02:37:16[ 0.813473] scsi0 : ahci 02:37:16[ 0.823340] scsi1 : ahci 02:37:16[ 0.848164] ata1: SATA max UDMA/133 abar m8192@0xe7484000 port 0xe7484100 irq 43 02:37:16[ 0.848166] ata2: SATA max UDMA/133 abar m8192@0xe7484000 port 0xe7484180 irq 43 02:37:16[ 1.190132] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 300) 02:37:16[ 1.190153] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 300) 02:37:16[ 1.213568] ata1.00: ATA-8: OCZ-VERTEX2, 1.23, max UDMA/133 02:37:16[ 1.213572] ata1.00: 195371568 sectors, multi 1: LBA48 NCQ (depth 31/32) 02:37:16[ 1.227293] ata2.00: ATA-8: ST9500420ASG, 0002SDM1, max UDMA/133 02:37:16[ 1.227297] ata2.00: 976773168 sectors, multi 16: LBA48 NCQ (depth 31/32) 02:37:16[ 1.229570] ata2.00: configured for UDMA/133 02:37:16[ 1.240120] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5850000 action 0xe frozen 02:37:16[ 1.240123] ata2: irq_stat 0x00000040, connection status changed 02:37:16[ 1.240127] ata2: SError: { PHYRdyChg CommWake LinkSeq TrStaTrns DevExch } 02:37:16[ 1.240133] ata2: hard resetting link 02:37:16[ 1.260738] ata1.00: configured for UDMA/133 02:37:16[ 1.280111] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5850000 action 0xe frozen 02:37:16[ 1.280114] ata1: irq_stat 0x00000040, connection status changed 02:37:16[ 1.280118] ata1: SError: { PHYRdyChg CommWake LinkSeq TrStaTrns DevExch } 02:37:16[ 1.280122] ata1: hard resetting link 02:37:16[ 1.990101] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 300) 02:37:16[ 1.994215] ata2.00: configured for UDMA/133 02:37:16[ 1.994220] ata2: EH complete 02:37:16[ 2.030097] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 300) 02:37:16[ 2.090773] ata1.00: configured for UDMA/133 02:37:16[ 2.090778] ata1: EH complete 02:37:16[ 2.090931] scsi 0:0:0:0: Direct-Access ATA OCZ-VERTEX2 1.23 PQ: 0 ANSI: 5 02:37:16[ 2.091045] sd 0:0:0:0: Attached scsi generic sg0 type 0 02:37:16[ 2.091121] sd 0:0:0:0: [sda] 195371568 512-byte logical blocks: (100 GB/93.1 GiB) 02:37:16[ 2.091159] scsi 1:0:0:0: Direct-Access ATA ST9500420ASG 0002 PQ: 0 ANSI: 5 02:37:16[ 2.091163] sd 0:0:0:0: [sda] Write Protect is off 02:37:16[ 2.091165] sd 0:0:0:0: [sda] Mode Sense: 00 3a 00 00 02:37:16[ 2.091183] sd 0:0:0:0: [sda] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA 02:37:16[ 2.091252] sd 1:0:0:0: Attached scsi generic sg1 type 0 02:37:16[ 2.091446] sd 1:0:0:0: [sdb] 976773168 512-byte logical blocks: (500 GB/465 GiB) 02:37:16[ 2.091580] sd 1:0:0:0: [sdb] Write Protect is off 02:37:16[ 2.091582] sd 1:0:0:0: [sdb] Mode Sense: 00 3a 00 00 02:37:16[ 2.091637] sd 1:0:0:0: [sdb] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA 02:37:16[ 2.093140] sd 0:0:0:0: [sda] Attached SCSI disk 02:37:16[ 2.093773] sd 1:0:0:0: [sdb] Attached SCSI disk 02:37:16[ 2.693899] EXT4-fs (dm-0): mounted filesystem with ordered data mode. Opts: (null) 02:37:16[ 5.483492] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro 02:37:16[ 7.905040] EXT4-fs (dm-2): mounted filesystem with ordered data mode. Opts: (null) 02:37:25[ 19.553095] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro,commit=600 02:37:25[ 19.555266] EXT4-fs (dm-2): re-mounted. Opts: commit=600 02:37:25[ 19.641532] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5950000 action 0xe frozen t4 02:37:25[ 19.641532] ata1: irq_stat 0x00000040, connection status changed 02:37:25[ 19.641532] ata1: SError: { PHYRdyChg CommWake Dispar LinkSeq TrStaTrns DevExch } 02:37:25[ 19.641533] ata1: hard resetting link 02:37:25[ 19.642076] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5950000 action 0xe frozen t4 02:37:25[ 19.642078] ata2: irq_stat 0x00000040, connection status changed 02:37:25[ 19.642081] ata2: SError: { PHYRdyChg CommWake Dispar LinkSeq TrStaTrns DevExch } 02:37:25[ 19.642084] ata2: hard resetting link 02:37:26[ 20.392606] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 300) 02:37:26[ 20.392610] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 300) 02:37:26[ 20.396697] ata2.00: configured for UDMA/133 02:37:26[ 20.396703] ata2: EH complete 02:37:26[ 20.451491] ata1.00: configured for UDMA/133 02:37:26[ 20.451498] ata1: EH complete 02:37:30[ 24.563725] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro,commit=600 02:37:30[ 24.565939] EXT4-fs (dm-2): re-mounted. Opts: commit=600 02:37:30[ 24.627236] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5900000 action 0xe frozen t4 02:37:30[ 24.627240] ata1: irq_stat 0x00000040, connection status changed 02:37:30[ 24.627242] ata1: SError: { Dispar LinkSeq TrStaTrns DevExch } 02:37:30[ 24.627246] ata1: hard resetting link 02:37:30[ 24.632241] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5950000 action 0xe frozen t4 02:37:30[ 24.632244] ata2: irq_stat 0x00000040, connection status changed 02:37:30[ 24.632247] ata2: SError: { PHYRdyChg CommWake Dispar LinkSeq TrStaTrns DevExch } 02:37:30[ 24.632250] ata2: hard resetting link 02:37:31[ 25.372582] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 300) 02:37:31[ 25.382615] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 300) 02:37:31[ 25.386782] ata2.00: configured for UDMA/133 02:37:31[ 25.386788] ata2: EH complete 02:37:31[ 25.431668] ata1.00: configured for UDMA/133 02:37:31[ 25.431674] ata1: EH complete 02:45:54[ 529.141844] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro,commit=0 02:45:55[ 529.544529] EXT4-fs (dm-2): re-mounted. Opts: commit=0 02:45:55[ 529.622561] ata1: limiting SATA link speed to 1.5 Gbps 02:45:55[ 529.622568] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5850000 action 0xe frozen 02:45:55[ 529.622572] ata1: irq_stat 0x00400040, connection status changed 02:45:55[ 529.622576] ata1: SError: { PHYRdyChg CommWake LinkSeq TrStaTrns DevExch } 02:45:55[ 529.622583] ata1: hard resetting link 02:45:55[ 529.622609] ata2: limiting SATA link speed to 1.5 Gbps 02:45:55[ 529.622613] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5950000 action 0xe frozen 02:45:55[ 529.622616] ata2: irq_stat 0x00000040, connection status changed 02:45:55[ 529.622620] ata2: SError: { PHYRdyChg CommWake Dispar LinkSeq TrStaTrns DevExch } 02:45:55[ 529.622624] ata2: hard resetting link 02:45:56[ 530.380135] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:45:56[ 530.380157] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:45:56[ 530.384305] ata2.00: configured for UDMA/133 02:45:56[ 530.384314] ata2: EH complete 02:45:56[ 530.399225] ata1.00: configured for UDMA/133 02:45:56[ 530.399233] ata1: EH complete 02:45:58[ 532.395990] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro,commit=600 02:45:58[ 532.518270] EXT4-fs (dm-2): re-mounted. Opts: commit=600 02:45:58[ 532.590968] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5840000 action 0xe frozen t4 02:45:58[ 532.590973] ata1: irq_stat 0x00000040, connection status changed 02:45:58[ 532.590977] ata1: SError: { CommWake LinkSeq TrStaTrns DevExch } 02:45:58[ 532.590983] ata1: hard resetting link 02:45:58[ 532.591034] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5950000 action 0xe frozen t4 02:45:58[ 532.591037] ata2: irq_stat 0x00000040, connection status changed 02:45:58[ 532.591041] ata2: SError: { PHYRdyChg CommWake Dispar LinkSeq TrStaTrns DevExch } 02:45:58[ 532.591045] ata2: hard resetting link 02:45:59[ 533.340147] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:45:59[ 533.340168] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:45:59[ 533.344416] ata2.00: configured for UDMA/133 02:45:59[ 533.344424] ata2: EH complete 02:45:59[ 533.360839] ata1.00: configured for UDMA/133 02:45:59[ 533.360847] ata1: EH complete 02:45:59[ 533.584449] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro,commit=0 02:45:59[ 533.586999] EXT4-fs (dm-2): re-mounted. Opts: commit=0 02:45:59[ 533.660117] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5950000 action 0xe frozen 02:45:59[ 533.660122] ata2: irq_stat 0x00000040, connection status changed 02:45:59[ 533.660126] ata2: SError: { PHYRdyChg CommWake Dispar LinkSeq TrStaTrns DevExch } 02:45:59[ 533.660132] ata2: hard resetting link 02:45:59[ 533.660141] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5850000 action 0xe frozen 02:45:59[ 533.660143] ata1: irq_stat 0x00000040, connection status changed 02:45:59[ 533.660147] ata1: SError: { PHYRdyChg CommWake LinkSeq TrStaTrns DevExch } 02:45:59[ 533.660151] ata1: hard resetting link 02:46:00[ 534.412536] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:00[ 534.412562] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:00[ 534.416768] ata2.00: configured for UDMA/133 02:46:00[ 534.416777] ata2: EH complete 02:46:00[ 534.431396] ata1.00: configured for UDMA/133 02:46:00[ 534.431401] ata1: EH complete 02:46:03[ 537.384649] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro,commit=600 02:46:03[ 537.504214] EXT4-fs (dm-2): re-mounted. Opts: commit=600 02:46:03[ 537.585992] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5900000 action 0xe frozen t4 02:46:03[ 537.585996] ata1: irq_stat 0x00000040, connection status changed 02:46:03[ 537.585999] ata1: SError: { Dispar LinkSeq TrStaTrns DevExch } 02:46:03[ 537.586002] ata1: hard resetting link 02:46:03[ 537.586028] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5950000 action 0xe frozen t4 02:46:03[ 537.586030] ata2: irq_stat 0x00000040, connection status changed 02:46:03[ 537.586033] ata2: SError: { PHYRdyChg CommWake Dispar LinkSeq TrStaTrns DevExch } 02:46:03[ 537.586036] ata2: hard resetting link 02:46:04[ 538.330147] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:04[ 538.330168] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:04[ 538.334389] ata2.00: configured for UDMA/133 02:46:04[ 538.334398] ata2: EH complete 02:46:04[ 538.343511] ata1.00: configured for UDMA/133 02:46:04[ 538.343519] ata1: EH complete 02:46:04[ 538.456413] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro,commit=0 02:46:04[ 538.459404] EXT4-fs (dm-2): re-mounted. Opts: commit=0 02:46:04[ 538.540138] ata1.00: limiting speed to UDMA/100:PIO4 02:46:04[ 538.540144] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5850000 action 0xe frozen 02:46:04[ 538.540148] ata1: irq_stat 0x00000040, connection status changed 02:46:04[ 538.540153] ata1: SError: { PHYRdyChg CommWake LinkSeq TrStaTrns DevExch } 02:46:04[ 538.540159] ata1: hard resetting link 02:46:04[ 538.540202] ata2.00: limiting speed to UDMA/100:PIO4 02:46:04[ 538.540207] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5950000 action 0xe frozen 02:46:04[ 538.540211] ata2: irq_stat 0x00000040, connection status changed 02:46:04[ 538.540215] ata2: SError: { PHYRdyChg CommWake Dispar LinkSeq TrStaTrns DevExch } 02:46:04[ 538.540220] ata2: hard resetting link 02:46:05[ 539.290054] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:05[ 539.290041] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:05[ 539.294100] ata2.00: configured for UDMA/100 02:46:05[ 539.294106] ata2: EH complete 02:46:05[ 539.314125] ata1.00: configured for UDMA/100 02:46:05[ 539.314132] ------------[ cut here ]------------ 02:46:05[ 539.314140] WARNING: at /build/buildd/linux-2.6.35/drivers/ata/libata-eh.c:3638 ata_eh_finish+0xdf/0xf0() 02:46:05[ 539.314144] Hardware name: MacBookPro5,3 02:46:05[ 539.314146] Modules linked in: michael_mic arc4 xt_multiport binfmt_misc rfcomm sco bnep l2cap parport_pc ppdev nvidia(P) ipt_REJECT xt_recent snd_hda_codec_cirrus xt_limit xt_tcpudp ipt_addrtype xt_state snd_hda_intel snd_hda_codec snd_hwdep snd_pcm snd_seq_midi applesmc led_class ip6table_filter lib80211_crypt_tkip snd_rawmidi snd_seq_midi_event ip6_tables input_polldev hid_apple snd_seq wl(P) snd_timer snd_seq_device snd joydev bcm5974 usbhid mbp_nvidia_bl uvcvideo btusb videodev v4l1_compat v4l2_compat_ioctl32 nf_nat_irc hid nf_conntrack_irc soundcore snd_page_alloc i2c_nforce2 coretemp lib80211 bluetooth nf_nat_ftp nf_nat nf_conntrack_ipv4 nf_defrag_ipv4 nf_conntrack_ftp nf_conntrack lp parport iptable_filter ip_tables x_tables usb_storage firewire_ohci firewire_core forcedeth crc_itu_t ahci libahci 02:46:05[ 539.314221] Pid: 202, comm: scsi_eh_0 Tainted: P 2.6.35-25-generic #44-Ubuntu 02:46:05[ 539.314224] Call Trace: 02:46:05[ 539.314233] [<ffffffff8106091f>] warn_slowpath_common+0x7f/0xc0 02:46:05[ 539.314237] [<ffffffff8106097a>] warn_slowpath_null+0x1a/0x20 02:46:05[ 539.314242] [<ffffffff813dc77f>] ata_eh_finish+0xdf/0xf0 02:46:05[ 539.314246] [<ffffffff813e441e>] sata_pmp_error_handler+0x2e/0x40 02:46:05[ 539.314256] [<ffffffffa00021bf>] ahci_error_handler+0x1f/0x90 [libahci] 02:46:05[ 539.314261] [<ffffffff813dd6d2>] ata_scsi_error+0x492/0x5e0 02:46:05[ 539.314266] [<ffffffff813b24cd>] scsi_error_handler+0x10d/0x190 02:46:05[ 539.314270] [<ffffffff813b23c0>] ? scsi_error_handler+0x0/0x190 02:46:05[ 539.314275] [<ffffffff8107f266>] kthread+0x96/0xa0 02:46:05[ 539.314280] [<ffffffff8100aee4>] kernel_thread_helper+0x4/0x10 02:46:05[ 539.314284] [<ffffffff8107f1d0>] ? kthread+0x0/0xa0 02:46:05[ 539.314288] [<ffffffff8100aee0>] ? kernel_thread_helper+0x0/0x10 02:46:05[ 539.314291] ---[ end trace 76dbffc2d5d49d9b ]--- 02:46:05[ 539.314296] ata1: EH complete 02:46:12[ 547.040091] ata1.00: exception Emask 0x0 SAct 0x0 SErr 0x0 action 0x6 frozen 02:46:12[ 547.040098] ata1.00: failed command: IDENTIFY DEVICE 02:46:12[ 547.040106] ata1.00: cmd ec/00:00:00:00:00/00:00:00:00:00/40 tag 0 pio 512 in 02:46:12[ 547.040108] res 40/00:01:00:00:00/00:00:00:00:00/e0 Emask 0x4 (timeout) 02:46:12[ 547.040111] ata1.00: status: { DRDY } 02:46:12[ 547.040117] ata1: hard resetting link 02:46:13[ 547.390144] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:13[ 547.408430] ata1.00: configured for UDMA/100 02:46:13[ 547.408438] ------------[ cut here ]------------ 02:46:13[ 547.408447] WARNING: at /build/buildd/linux-2.6.35/drivers/ata/libata-eh.c:3638 ata_eh_finish+0xdf/0xf0() 02:46:13[ 547.408451] Hardware name: MacBookPro5,3 02:46:13[ 547.408453] Modules linked in: michael_mic arc4 xt_multiport binfmt_misc rfcomm sco bnep l2cap parport_pc ppdev nvidia(P) ipt_REJECT xt_recent snd_hda_codec_cirrus xt_limit xt_tcpudp ipt_addrtype xt_state snd_hda_intel snd_hda_codec snd_hwdep snd_pcm snd_seq_midi applesmc led_class ip6table_filter lib80211_crypt_tkip snd_rawmidi snd_seq_midi_event ip6_tables input_polldev hid_apple snd_seq wl(P) snd_timer snd_seq_device snd joydev bcm5974 usbhid mbp_nvidia_bl uvcvideo btusb videodev v4l1_compat v4l2_compat_ioctl32 nf_nat_irc hid nf_conntrack_irc soundcore snd_page_alloc i2c_nforce2 coretemp lib80211 bluetooth nf_nat_ftp nf_nat nf_conntrack_ipv4 nf_defrag_ipv4 nf_conntrack_ftp nf_conntrack lp parport iptable_filter ip_tables x_tables usb_storage firewire_ohci firewire_core forcedeth crc_itu_t ahci libahci 02:46:13[ 547.408528] Pid: 202, comm: scsi_eh_0 Tainted: P W 2.6.35-25-generic #44-Ubuntu 02:46:13[ 547.408531] Call Trace: 02:46:13[ 547.408540] [<ffffffff8106091f>] warn_slowpath_common+0x7f/0xc0 02:46:13[ 547.408544] [<ffffffff8106097a>] warn_slowpath_null+0x1a/0x20 02:46:13[ 547.408549] [<ffffffff813dc77f>] ata_eh_finish+0xdf/0xf0 02:46:13[ 547.408553] [<ffffffff813e441e>] sata_pmp_error_handler+0x2e/0x40 02:46:13[ 547.408563] [<ffffffffa00021bf>] ahci_error_handler+0x1f/0x90 [libahci] 02:46:13[ 547.408567] [<ffffffff813dd6d2>] ata_scsi_error+0x492/0x5e0 02:46:13[ 547.408572] [<ffffffff813b24cd>] scsi_error_handler+0x10d/0x190 02:46:13[ 547.408577] [<ffffffff813b23c0>] ? scsi_error_handler+0x0/0x190 02:46:13[ 547.408582] [<ffffffff8107f266>] kthread+0x96/0xa0 02:46:13[ 547.408587] [<ffffffff8100aee4>] kernel_thread_helper+0x4/0x10 02:46:13[ 547.408591] [<ffffffff8107f1d0>] ? kthread+0x0/0xa0 02:46:13[ 547.408595] [<ffffffff8100aee0>] ? kernel_thread_helper+0x0/0x10 02:46:13[ 547.408598] ---[ end trace 76dbffc2d5d49d9c ]--- 02:46:13[ 547.408620] ata1: EH complete 02:46:13[ 547.562470] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro,commit=600 02:46:13[ 547.671380] EXT4-fs (dm-2): re-mounted. Opts: commit=600 02:46:13[ 547.738198] ata1.00: limiting speed to UDMA/33:PIO4 02:46:13[ 547.738204] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5800000 action 0xe frozen t4 02:46:13[ 547.738208] ata1: irq_stat 0x00000040, connection status changed 02:46:13[ 547.738212] ata1: SError: { LinkSeq TrStaTrns DevExch } 02:46:13[ 547.738218] ata1: hard resetting link 02:46:13[ 547.738262] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5900000 action 0xe frozen t4 02:46:13[ 547.738265] ata2: irq_stat 0x00000040, connection status changed 02:46:13[ 547.738269] ata2: SError: { Dispar LinkSeq TrStaTrns DevExch } 02:46:13[ 547.738274] ata2: hard resetting link 02:46:14[ 548.482561] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:14[ 548.484083] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:14[ 548.486809] ata2.00: configured for UDMA/100 02:46:14[ 548.486818] ata2: EH complete 02:46:14[ 548.498998] ata1.00: configured for UDMA/33 02:46:14[ 548.499004] ata1: EH complete 02:46:18[ 552.410499] EXT4-fs (dm-0): re-mounted. Opts: errors=remount-ro,commit=600 02:46:18[ 552.522521] EXT4-fs (dm-2): re-mounted. Opts: commit=600 02:46:18[ 552.529674] ata1: exception Emask 0x10 SAct 0x0 SErr 0x5800000 action 0xe frozen t4 02:46:18[ 552.529678] ata1: irq_stat 0x00000040, connection status changed 02:46:18[ 552.529680] ata1: SError: { LinkSeq TrStaTrns DevExch } 02:46:18[ 552.529684] ata1: hard resetting link 02:46:18[ 552.529716] ata2: exception Emask 0x10 SAct 0x0 SErr 0x5800000 action 0xe frozen t4 02:46:18[ 552.529718] ata2: irq_stat 0x00000040, connection status changed 02:46:18[ 552.529720] ata2: SError: { LinkSeq TrStaTrns DevExch } 02:46:18[ 552.529723] ata2: hard resetting link 02:46:19[ 553.280059] ata1: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:19[ 553.280068] ata2: SATA link up 1.5 Gbps (SStatus 113 SControl 310) 02:46:19[ 553.284141] ata2.00: configured for UDMA/100 02:46:19[ 553.284150] ata2: EH complete 02:46:19[ 553.301629] ata1.00: configured for UDMA/33 02:46:19[ 553.301637] ata1: EH complete

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• Is there a DRMAA Java library that works with Torque/PBS?

  - by dondondon

  Does anybody know a Java implementation of the DRMAA-API that is known to work with PBS/Torque cluster software? The background behind this: I would like to submit jobs to a newly set-up linux cluster from java using a DRMAA compliant API. The cluster is managed by PBS/Torque. Torque includes PBS DRMAA 1.0 library for Torque/PBS that contains a DRMA-C binding and provides in libdrmaa.so and .a binaries. I know that Sun grid engine includes a drmaa.jar providing a Java-DRMAA API. In fact I opted to use SGE but it was decided to try PBS first. The theory behind that decision was: 'DRMAA is a standard and therefore a Java API needs only a standards compliant drmaa-c binding.' However, I couldn't find such 'general DRMAA-C-java API' and now assume that this assumption is wrong and that the Java libraries are engine specific. Are we stuck here? Any comments appreciated.

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• building mono from svn - android target

  - by Jeremy Bell

  There were patches made to mono on trunk svn to support android. My understanding is that essentially instead of Koush's system which builds mono using the android NDK build system directly, these patches add support for the android NDK using the regular mono configure.sh process. I'd like to play around with this patch, but not being an expert in the mono build system, I have no idea how to tell it to target the android NDK, or even where to look. I've been able to build mono from SVN using the default target (linux) on Ubuntu, but no documentation on how to target android was given with the patches. Since anyone not submitting or reviewing a patch is generally ignored on the mono mailing list, I figured I'd post the question here.

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• What web server should I use if I want to run Java code behind it?

  - by Boaz

  At the moment, I have lot's of Java which does all kind of nifty stuff and I'm happy with it. The code is command line driven which have been great so far, but I recently decided I want to make the functionality available through web-services. Since my is complex and I'm happy with the way it's written , I don't want go through the pain of porting it to other languages. So I set out on a google journey to find out what web servers exist (on a Linux machine, though it's interesting to hear the answer without that limitation). From what I could find, it seems that there are two viable options: Apache Tomcat and Sun Java Server. What are the reason to choose one on top of the other? what are the strength of each and what are the weaknesses? Or, perhaps, there is a third one which is much easier, flexible and less cumbersome. Anyone?

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• Can't get expand_aliases to take effect

  - by sachmet

  I can't get expand_aliases to take effect in bash. I've tried a lot of different things, and nothing works. Here's the simple test case: /bin/bash -c 'shopt -s expand_aliases; alias cdtmp="cd /tmp"; alias; cdtmp; pwd;' And the output: $ /bin/bash -c 'shopt -s expand_aliases; alias cdtmp="cd /tmp"; alias; cdtmp; pwd;' alias cdtmp='cd /tmp' /bin/bash: cdtmp: command not found /home/user $ /bin/bash --version GNU bash, version 3.2.25(1)-release (i686-redhat-linux-gnu) Copyright (C) 2005 Free Software Foundation, Inc. (Yes, I'm using shopt instead of the -O option to bash, just to prove it's being done.) Any ideas?

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