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• pdflush hanging on Amazon EBS drives when using multi-GB files - any workaround?

  - by rhh

  Hello, When I run gunzip on a 1.7GB file (which generates an 8GB file) on an EBS volume, pdflush freezes after gunzip runs and the CPU hangs indefinitely at 100% IO Wait. Here's the output from 'ps aux | grep pdflush'. Note the D status root 87 0.0 0.0 0 0 ? D 06:18 0:00 pdflush root 88 0.0 0.0 0 0 ? D 06:18 0:00 pdflush The only solution is to kill the pdflush processes. The processes don't die immediately either. This problem is repeatable and happens with new instances. I'm running 2xlarge instances and I have way more RAM free than is being used (i.e. /proc/meminfo shows 20+GB MemFree) Has anyone found a workaround to this problem in the past? Thanks for any thoughts. Robert

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• How to add texture to fill colors in ggplot2?

  - by rhh

  I'm currently using scale_brewer for fill and these look beautiful in color (on screen and via color printer) but print relatively uniformly as greys when using a black and white printer. I searched the online ggplot2 documentation but didn't see anything about adding textures to fill colors. Is there an official ggplot2 way to do this or does anyone have a hack that they use? By textures I mean things like diagonal bars, reverse diagonal bars, dot patterns, etc that would differentiate fill colors when printed in black and white. Thanks for thoughts! Robert

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• How to mutate rows of data frame - replacing one value with another

  - by rhh

  I'm having trouble with what I think is a basic R task. Here's my sample dataframe named 'b' Winner Color Size Tom Yellow Med Jerry Yellow Lar Jane Blue Med where items in the Winner column are factors. I'm trying to change "Tom" in the dataframe to "Tom LLC" and I can't get it done. Here's what I tried: Simple way: b$winner[b$winner=='Tom'] = as.factor('Tom LLC') but that failed with "invalid factor level, NAs generated" Next I tried a more advanced route: name_reset = function (x, y, z) { if (x$winner == y) {x$winner = z} } b = adply(b,1,name_reset,'Tom','Tom LLC') but that failed with "Error in list_to_dataframe(res, attr(.data, "split_labels")) : Results are not equal lengths" I feel I'm missing something basic. Can someone redirect me or offer suggestions on the code I wrote above? Thank you very much

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• Facebook Cucumber testing with Authlogic - how test user logged in as facebook user?

  - by rhh

  I'm having trouble implementing this step: Given "I am logged in as a Facebook user" do end The best suggestions I can find on the web (http://opensoul.org/2009/3/6/testing-facebook-with-cucumber) do not seem to be using Authlogic for authentication. Can someone with the Cucumber/Authlogic_facebook_connect/Authlogic combo post their step for testing facebook logins? Thank you very much.

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