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• Trouble with Berkeley DB JE Base API Secondary Databases and Sequences

  - by milosz

  I have a class Document which consists of Id (int) and Url (String). I would like to have a primary index on Id and secondary index on Url. I would also like to have a sequence for Id auto-incrementation. So I create a SecondaryDatabase and then I create a Sequence. During initialisation of the Sequence I get an exception: Exception in thread "main" java.lang.IllegalArgumentException at com.sleepycat.util.UtfOps.getCharLength(UtfOps.java:137) at com.sleepycat.util.UtfOps.bytesToString(UtfOps.java:259) at com.sleepycat.bind.tuple.TupleInput.readString(TupleInput.java:152) at pl.edu.mimuw.zbd.berkeley.zadanie.rozwiazanie.MyDocumentBiding.entryToObject(MyDocumentBiding.java:12) at pl.edu.mimuw.zbd.berkeley.zadanie.rozwiazanie.MyDocumentBiding.entryToObject(MyDocumentBiding.java:1) at com.sleepycat.bind.tuple.TupleBinding.entryToObject(TupleBinding.java:76) at pl.edu.mimuw.zbd.berkeley.zadanie.rozwiazanie.UrlKeyCreator.createSecondaryKey(UrlKeyCreator.java:20) at com.sleepycat.je.SecondaryDatabase.updateSecondary(SecondaryDatabase.java:835) at com.sleepycat.je.SecondaryTrigger.databaseUpdated(SecondaryTrigger.java:42) at com.sleepycat.je.Database.notifyTriggers(Database.java:2004) at com.sleepycat.je.Cursor.putNotify(Cursor.java:1692) at com.sleepycat.je.Cursor.putInternal(Cursor.java:1616) at com.sleepycat.je.Cursor.putNoOverwrite(Cursor.java:663) at com.sleepycat.je.Sequence.<init>(Sequence.java:188) at com.sleepycat.je.Database.openSequence(Database.java:546) at pl.edu.mimuw.zbd.berkeley.zadanie.rozwiazanie.MyFullTextSearchEngine.init(MyFullTextSearchEngine.java:131) at pl.edu.mimuw.zbd.berkeley.zadanie.testy.MyFullTextSearchEngineTest.main(MyFullTextSearchEngineTest.java:18) It seems that during the initialisation of the sequence the secondary database is forced to update. When I debug the entryToObject method of MyDocumentBiding the bytes that it tries to convert to object seem random. What am I doing wrong?

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• Package visible in Synaptic but not in aptitude?

  - by sleepycat

  I can see libfreeimage3-dev in synaptic and have installed it from there, but what is it that I can't see it from the command line? I tried sudo aptitude update... mike@sleepycat:~$ sudo aptitude search '~n.*freeimage3.*' i libfreeimage3 - Support library for graphics image formats p libfreeimage3-dbg - Support library for graphics image formats Any ideas?

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• Is there an alternative to Google Code Search?

  - by blunders

  Per the Official Google Blog: Code Search, which was designed to help people search for open source code all over the web, will be shut down along with the Code Search API on January 15, 2012. Google Code Search is now gone, and since that makes it much harder to understand the features it presented, here's my attempt to render them via information I gathered from a cache of the page for the Search Options: The "In Search Box" just notes the syntax to type the command directly in the main search box instead of using the advance search interface. Package (In Search Box: "package:linux-2.6") Language (In Search Box: "lang:c++") (OPTIONS: any language, actionscript, ada, applescript, asp, assembly, autoconf, automake, awk, basic, bat, c, c#, c++, caja, cobol, coldfusion, configure, css, d, eiffel, erlang, fortran, go, haskell, inform, java, java, javascript, jsp, lex, limbo, lisp, lolcode, lua, m4, makefile, maple, mathematica, matlab, messagecatalog, modula2, modula3, objectivec, ocaml, pascal, perl, php, pod, prolog, proto, python, python, r, rebol, ruby, sas, scheme, scilab, sgml, shell, smalltalk, sml, sql, svg, tcl, tex, texinfo, troff, verilog, vhdl, vim, xslt, xul, yacc) File (In Search Box: "file:^.*.java$") Class (In Search Box: "class:HashMap") Function (In Search Box: "function:toString") License (In Search Box: "license:mozilla") (OPTIONS: null/any-license, aladdin/Aladdin-Public-License, artistic/Artistic-License, apache/Apache-License, apple/Apple-Public-Source-License, bsd/BSD-License, cpl/Common-Public-License, epl/Eclipse-Public-License, agpl/GNU-Affero-General-Public-License, gpl/GNU-General-Public-License, lgpl/GNU-Lesser-General-Public-License, disclaimer/Historical-Permission-Notice-and-Disclaimer, ibm/IBM-Public-License, lucent/Lucent-Public-License, mit/MIT-License, mozilla/Mozilla-Public-License, nasa/NASA-Open-Source-Agreement, python/Python-Software-Foundation-License, qpl/Q-Public-License, sleepycat/Sleepycat-License, zope/Zope-Public-License) Case Sensitive (In Search Box: "case:no") (OPTIONS: yes, no) Also of use in understanding the search tool would be the still live FAQs page for Google Code Search. Is there any code search engine that would fully replace Google Code Search's features?

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• Rails: find by day of week with timestamp

  - by Sleepycat

  I need to grab the records for same day of the week for the preceeding X days of the week. There must be a better way to do it than this: Transaction.find_by_sql "select * from transactions where EXTRACT(DOW from date) = 1 and organisation_id = 4 order by date desc limit 7" It gets me what I need but is Postgres specific and not very "Rails-y". Date is a timestamp. Anyone got suggestions?

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• Sequel Migration not running up?

  - by Sleepycat

  Having some trouble with the Migrations in Sequel and could use another set of eyes. I am running a migration that looks ok but no table is created. It is definitely connecting because I can see the schema_info table has been created. -M 0/1 changes the version as you would expect but still no table. The command: sequel -m . -M 1 ~/Desktop/dbtest/testdb.yml 001_testdb.rb: class TestDb < Sequel::Migration def up create_table( "terminals") do primary_key :id Integer :location_id Integer :merchant_id BigDecimal :terminal_id, :size=>[11, 0] String :reference, :size=>255 DateTime :created_at DateTime :updated_at String :image, :default=>"default.jpg", :size=>255 end end def down drop_table :terminals end end The output in Postgres: test_db=# \dt List of relations Schema | Name | Type | Owner --------+-------------+-------+---------- public | schema_info | table | postgres (1 row) test_db=# select * from schema_info; version --------- 1 (1 row)

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• Testing a patch to the Rails mysql adapter

  - by Sleepycat

  I wrote a little monkeypatch to the Rails MySQLAdapter and want to package it up to use it in my other projects. I am trying to write some tests for it but I am still new to testing and I am not sure how to test this. Can someone help get me started? Here is the code I want to test: unless RAILS_ENV == 'production' module ActiveRecord module ConnectionAdapters class MysqlAdapter < AbstractAdapter def select_with_explain(sql, name = nil) explanation = execute_with_disable_logging('EXPLAIN ' + sql) e = explanation.all_hashes.first exp = e.collect{|k,v| " | #{k}: #{v} "}.join log(exp, 'Explain') select_without_explain(sql, name) end def execute_with_disable_logging(sql, name = nil) #:nodoc: #Run a query without logging @connection.query(sql) rescue ActiveRecord::StatementInvalid => exception if exception.message.split(":").first =~ /Packets out of order/ raise ActiveRecord::StatementInvalid, "'Packets out of order' error was received from the database. Please update your mysql bindings (gem install mysql) and read http://dev.mysql.com/doc/mysql/en/password-hashing.html for more information. If you're on Windows, use the Instant Rails installer to get the updated mysql bindings." else raise end end alias_method_chain :select, :explain end end end end Thanks.

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• Will_paginate stuck on page 2

  - by Sleepycat

  For some reason my will_paginate collection is stuck on page 2. I have the usual links the view helper provides except every page after page one links to http://localhost:3000/ceo/gr_messages?page=2 I have tried to add the :order option with no luck. I have also ensured that the request is a get as mentioned on this page: http://wiki.github.com/mislav/will_paginate/simple-search Any other thoughts or suggestions would be appreciated.

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• Creating a desktop icon using JWS JNLP for a JavaFX app.

  - by Sleepycat

  I am trying to get a custom destop icon to be displayed for my app but for some reason no matter what I do the same default java icon shows up. I have tried everything I can think of and gone and compared my jnlp file with others whose icons seem to work ok. According to everything I have read the following should work fine. But of course, it doesn't: <information> <title>MikesApp</title> <vendor>Mike</vendor> <homepage href="http://www.mikesapp.com/"/> <description>Mikes App.</description> <icon kind="shortcut" href="res/icon64x64.png" width="64" height="64"/> <offline-allowed/> <shortcut> <desktop/> </shortcut> </information> Any ideas would be greatly appreciated.

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• Rails: validates_acceptance_of acting crazy

  - by Sleepycat

  Whats wrong with this picture? Model: validates_acceptance_of :terms_of_service, :on => :create, :accept => true, :allow_nil => false accessor :terms_of_service View: <%= check_box :organisation,'terms_of_service', {:style => "margin-left:0px"}, 1, 0 %> And in the DB I have organisations.terms_of_service. Every time I get "Terms of service must be accepted" Any ideas?

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• Git: committed to wrong branch

  - by Sleepycat

  D'oh! I just made a perfectly good commit to the wrong branch. How do I undo the last commit in my master branch and then take those same changes and get them into my upgrade branch? Thanks!

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• mysql never releases memory

  - by Ishu

  I have a production server clocking about 4 million page views per month. The server has got 8GB of RAM and mysql acts as a database. I am facing problems in handling mysql to take this load. I need to restart mysql twice a day to handle this thing. The problem with mysql is that it starts with some particular occupation, the memory consumed by mysql keeps on increasing untill it reaches the maximum it can consume and then mysql stops responding slowly or does not respond at all, which freezes the server. All my tables are indexed properly and there are no long queries. I need some one to help on how to go about debugging what to do here. All my tables are myisam. I have tried configuring the parameters key_buffer etc but to no rescue. Any sort of help is greatly appreciated. Here are some parameters which may help. mysql --version mysql Ver 14.12 Distrib 5.0.77, for redhat-linux-gnu (i686) using readline 5.1 mysql> show variables; +---------------------------------+------------------------------------------------------------+ | Variable_name | Value | +---------------------------------+------------------------------------------------------------+ | auto_increment_increment | 1 | | auto_increment_offset | 1 | | automatic_sp_privileges | ON | | back_log | 50 | | basedir | /usr/ | | bdb_cache_size | 8384512 | | bdb_home | /var/lib/mysql/ | | bdb_log_buffer_size | 262144 | | bdb_logdir | | | bdb_max_lock | 10000 | | bdb_shared_data | OFF | | bdb_tmpdir | /tmp/ | | binlog_cache_size | 32768 | | bulk_insert_buffer_size | 8388608 | | character_set_client | latin1 | | character_set_connection | latin1 | | character_set_database | latin1 | | character_set_filesystem | binary | | character_set_results | latin1 | | character_set_server | latin1 | | character_set_system | utf8 | | character_sets_dir | /usr/share/mysql/charsets/ | | collation_connection | latin1_swedish_ci | | collation_database | latin1_swedish_ci | | collation_server | latin1_swedish_ci | | completion_type | 0 | | concurrent_insert | 1 | | connect_timeout | 10 | | datadir | /var/lib/mysql/ | | date_format | %Y-%m-%d | | datetime_format | %Y-%m-%d %H:%i:%s | | default_week_format | 0 | | delay_key_write | ON | | delayed_insert_limit | 100 | | delayed_insert_timeout | 300 | | delayed_queue_size | 1000 | | div_precision_increment | 4 | | keep_files_on_create | OFF | | engine_condition_pushdown | OFF | | expire_logs_days | 0 | | flush | OFF | | flush_time | 0 | | ft_boolean_syntax | + -><()~*:""&| | | ft_max_word_len | 84 | | ft_min_word_len | 4 | | ft_query_expansion_limit | 20 | | ft_stopword_file | (built-in) | | group_concat_max_len | 1024 | | have_archive | NO | | have_bdb | YES | | have_blackhole_engine | NO | | have_compress | YES | | have_crypt | YES | | have_csv | NO | | have_dynamic_loading | YES | | have_example_engine | NO | | have_federated_engine | NO | | have_geometry | YES | | have_innodb | YES | | have_isam | NO | | have_merge_engine | YES | | have_ndbcluster | NO | | have_openssl | DISABLED | | have_ssl | DISABLED | | have_query_cache | YES | | have_raid | NO | | have_rtree_keys | YES | | have_symlink | YES | | | init_connect | | | init_file | | | init_slave | | | interactive_timeout | 28800 | | join_buffer_size | 131072 | | key_buffer_size | 2621440000 | | key_cache_age_threshold | 300 | | key_cache_block_size | 1024 | | key_cache_division_limit | 100 | | language | /usr/share/mysql/english/ | | large_files_support | ON | | large_page_size | 0 | | large_pages | OFF | | lc_time_names | en_US | | license | GPL | | local_infile | ON | | locked_in_memory | OFF | | log | OFF | | log_bin | ON | | log_bin_trust_function_creators | OFF | | log_error | | | log_queries_not_using_indexes | OFF | | log_slave_updates | OFF | | log_slow_queries | ON | | log_warnings | 1 | | long_query_time | 8 | | low_priority_updates | OFF | | lower_case_file_system | OFF | | lower_case_table_names | 0 | | max_allowed_packet | 8388608 | | max_binlog_cache_size | 4294963200 | | max_binlog_size | 1073741824 | | max_connect_errors | 10 | | max_connections | 400 | | max_delayed_threads | 20 | | max_error_count | 64 | | max_heap_table_size | 16777216 | | max_insert_delayed_threads | 20 | | max_join_size | 4294967295 | | max_length_for_sort_data | 1024 | | max_prepared_stmt_count | 16382 | | max_relay_log_size | 0 | | max_seeks_for_key | 4294967295 | | max_sort_length | 1024 | | max_sp_recursion_depth | 0 | | max_tmp_tables | 32 | | max_user_connections | 0 | | max_write_lock_count | 4294967295 | | multi_range_count | 256 | | myisam_data_pointer_size | 6 | | myisam_max_sort_file_size | 2146435072 | | myisam_recover_options | OFF | | myisam_repair_threads | 1 | | myisam_sort_buffer_size | 16777216 | | myisam_stats_method | nulls_unequal | | net_buffer_length | 16384 | | net_read_timeout | 30 | | net_retry_count | 10 | | net_write_timeout | 60 | | new | OFF | | old_passwords | OFF | | open_files_limit | 2000 | | optimizer_prune_level | 1 | | optimizer_search_depth | 62 | | pid_file | /var/run/mysqld/mysqld.pid | | plugin_dir | | | port | 3306 | | preload_buffer_size | 32768 | | profiling | OFF | | profiling_history_size | 15 | | protocol_version | 10 | | query_alloc_block_size | 8192 | | query_cache_limit | 1048576 | | query_cache_min_res_unit | 4096 | | query_cache_size | 134217728 | | query_cache_type | ON | | query_cache_wlock_invalidate | OFF | | query_prealloc_size | 8192 | | range_alloc_block_size | 4096 | | read_buffer_size | 2097152 | | read_only | OFF | | read_rnd_buffer_size | 8388608 | | relay_log | | | relay_log_index | | | relay_log_info_file | relay-log.info | | relay_log_purge | ON | | relay_log_space_limit | 0 | | rpl_recovery_rank | 0 | | secure_auth | OFF | | secure_file_priv | | | server_id | 1 | | skip_external_locking | ON | | skip_networking | OFF | | skip_show_database | OFF | | slave_compressed_protocol | OFF | | slave_load_tmpdir | /tmp/ | | slave_net_timeout | 3600 | | slave_skip_errors | OFF | | slave_transaction_retries | 10 | | slow_launch_time | 2 | | socket | /var/lib/mysql/mysql.sock | | sort_buffer_size | 2097152 | | sql_big_selects | ON | | sql_mode | | | sql_notes | ON | | sql_warnings | OFF | | ssl_ca | | | ssl_capath | | | ssl_cert | | | ssl_cipher | | | ssl_key | | | storage_engine | MyISAM | | sync_binlog | 0 | | sync_frm | ON | | system_time_zone | CST | | table_cache | 256 | | table_lock_wait_timeout | 50 | | table_type | MyISAM | | thread_cache_size | 8 | | thread_stack | 196608 | | time_format | %H:%i:%s | | time_zone | SYSTEM | | timed_mutexes | OFF | | tmp_table_size | 33554432 | | tmpdir | /tmp/ | | transaction_alloc_block_size | 8192 | | transaction_prealloc_size | 4096 | | tx_isolation | REPEATABLE-READ | | updatable_views_with_limit | YES | | version | 5.0.77-log | | version_bdb | Sleepycat Software: Berkeley DB 4.1.24: (January 29, 2009) | | version_comment | Source distribution | | version_compile_machine | i686 | | version_compile_os | redhat-linux-gnu | | wait_timeout | 28800 | +---------------------------------+------------------------------------------------------------+

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• MacPorts 1.8.2 fails to build db46 on Mac OS X 1.6.3

  - by themoch

  I'm trying to put a development environment on my Mac, and to do so I need to install several packages which require db46. When running sudo port install db46 I get the following error: ---> Computing dependencies for db46 ---> Fetching db46 ---> Attempting to fetch patch.4.6.21.1 from http://www.oracle.com/technology/products/berkeley-db/db/update/4.6.21/ ---> Attempting to fetch patch.4.6.21.2 from http://www.oracle.com/technology/products/berkeley-db/db/update/4.6.21/ ---> Attempting to fetch patch.4.6.21.3 from http://www.oracle.com/technology/products/berkeley-db/db/update/4.6.21/ ---> Attempting to fetch patch.4.6.21.4 from http://www.oracle.com/technology/products/berkeley-db/db/update/4.6.21/ ---> Attempting to fetch db-4.6.21.tar.gz from http://distfiles.macports.org/db4/4.6.21_6 ---> Verifying checksum(s) for db46 ---> Extracting db46 ---> Applying patches to db46 ---> Configuring db46 ---> Building db46 Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_databases_db46/work/db-4.6.21/build_unix" && /usr/bin/make -j2 all " returned error 2 Command output: ../dist/../libdb_java/db_java_wrap.c:9464: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9487: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9509: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9532: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9563: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jint' ../dist/../libdb_java/db_java_wrap.c:9588: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9613: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jint' ../dist/../libdb_java/db_java_wrap.c:9638: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9666: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9691: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9716: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9739: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9771: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9796: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9819: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9842: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9867: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jobject' ../dist/../libdb_java/db_java_wrap.c:9899: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9920: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9943: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9966: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jstring' ../dist/../libdb_java/db_java_wrap.c:9991: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jint' ../dist/../libdb_java/db_java_wrap.c:10010: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:10046: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:10071: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' make: *** [db_java_wrap.lo] Error 1 make: *** Waiting for unfinished jobs.... Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. cd ./classes && jar cf ../db.jar ./com/sleepycat Error: Status 1 encountered during processing. I have removed my /usr/local folder completely and it does not seem to help.

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• Macports 1.8.2 fails to build db46 on os x 1.6.3

  - by themoch

  i'm trying to put a dev environment on my mac, and to do so i need to install several packages which require db46 when running sudo port install db46 i get the following error: ---> Computing dependencies for db46 ---> Fetching db46 ---> Attempting to fetch patch.4.6.21.1 from http://www.oracle.com/technology/products/berkeley-db/db/update/4.6.21/ ---> Attempting to fetch patch.4.6.21.2 from http://www.oracle.com/technology/products/berkeley-db/db/update/4.6.21/ ---> Attempting to fetch patch.4.6.21.3 from http://www.oracle.com/technology/products/berkeley-db/db/update/4.6.21/ ---> Attempting to fetch patch.4.6.21.4 from http://www.oracle.com/technology/products/berkeley-db/db/update/4.6.21/ ---> Attempting to fetch db-4.6.21.tar.gz from http://distfiles.macports.org/db4/4.6.21_6 ---> Verifying checksum(s) for db46 ---> Extracting db46 ---> Applying patches to db46 ---> Configuring db46 ---> Building db46 Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_databases_db46/work/db-4.6.21/build_unix" && /usr/bin/make -j2 all " returned error 2 Command output: ../dist/../libdb_java/db_java_wrap.c:9464: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9487: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9509: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9532: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9563: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jint' ../dist/../libdb_java/db_java_wrap.c:9588: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9613: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jint' ../dist/../libdb_java/db_java_wrap.c:9638: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9666: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9691: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jlong' ../dist/../libdb_java/db_java_wrap.c:9716: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9739: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9771: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9796: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9819: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9842: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9867: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jobject' ../dist/../libdb_java/db_java_wrap.c:9899: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9920: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9943: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:9966: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jstring' ../dist/../libdb_java/db_java_wrap.c:9991: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'jint' ../dist/../libdb_java/db_java_wrap.c:10010: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:10046: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ../dist/../libdb_java/db_java_wrap.c:10071: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' make: *** [db_java_wrap.lo] Error 1 make: *** Waiting for unfinished jobs.... Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. cd ./classes && jar cf ../db.jar ./com/sleepycat Error: Status 1 encountered during processing. i have removed my /usr/local folder completely and it does not seem to help

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• Having problems with high CPU usage and apparent memory leak of Exim

  - by Dancrumb

  I'm having problems with my server and am hoping you can help. The culprit appears to be exim. The CPU usage is consistently high and the memory usage trends up and up and up for no apparent reason (this is not a heavily used server). To demonstrate the issue, I ran the following: root@server [/var/log]# service exim restart; for iter in `seq 0 9`; do date; top -n1 | grep exim; sleep 10; done Shutting down exim: [ OK ] Shutting down spamd: [ OK ] Starting exim: [ OK ] Sun Jun 6 18:12:07 CDT 2010 62592 root 25 0 11400 6572 2356 R 51.5 1.3 0:00.92 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim Sun Jun 6 18:12:18 CDT 2010 62592 root 25 0 28768 23m 2356 R 57.4 4.6 0:06.75 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim 62588 root 18 0 7536 2052 1648 S 0.0 0.4 0:00.00 exim Sun Jun 6 18:12:28 CDT 2010 62592 root 25 0 36408 30m 2356 R 55.5 6.0 0:12.59 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim 62588 root 18 0 7536 2052 1648 S 0.0 0.4 0:00.00 exim Sun Jun 6 18:12:39 CDT 2010 62592 root 25 0 41396 35m 2356 R 53.5 7.0 0:18.35 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim 62588 root 18 0 7536 2052 1648 S 0.0 0.4 0:00.00 exim Sun Jun 6 18:12:49 CDT 2010 62592 root 25 0 45868 40m 2356 R 47.5 7.8 0:24.06 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim 62588 root 18 0 7536 2052 1648 S 0.0 0.4 0:00.00 exim Sun Jun 6 18:13:00 CDT 2010 62592 root 25 0 50056 44m 2356 R 55.3 8.6 0:29.84 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim 62588 root 18 0 7536 2052 1648 S 0.0 0.4 0:00.00 exim Sun Jun 6 18:13:10 CDT 2010 62592 root 25 0 53888 47m 2356 R 55.2 9.4 0:35.63 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim 62588 root 18 0 7536 2052 1648 S 0.0 0.4 0:00.00 exim Sun Jun 6 18:13:21 CDT 2010 62592 root 20 0 56920 50m 2356 R 55.3 9.9 0:41.15 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim 62588 root 18 0 7536 2052 1648 S 0.0 0.4 0:00.00 exim Sun Jun 6 18:13:31 CDT 2010 62592 root 25 0 60380 54m 2356 R 53.4 10.6 0:46.98 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim 62588 root 18 0 7536 2052 1648 S 0.0 0.4 0:00.00 exim Sun Jun 6 18:13:42 CDT 2010 62592 root 22 0 63400 57m 2356 R 49.5 11.2 0:52.74 exim 62587 mailnull 18 0 7548 1212 792 S 0.0 0.2 0:00.00 exim 62588 root 18 0 7536 2052 1648 S 0.0 0.4 0:00.00 exim After some time, it gets to a rate of picking up an extra MB every 10s. I've checked the exim logs and there are no messages coming in there. exim -bV shows: Exim version 4.69 #1 built 16-Mar-2009 14:44:43 Copyright (c) University of Cambridge 2006 Berkeley DB: Sleepycat Software: Berkeley DB 4.2.52: (February 22, 2005) Support for: crypteq iconv() IPv6 PAM Perl OpenSSL Content_Scanning Old_Demime Experimental_SPF Experimental_SRS Experimental_DomainKeys Lookups: lsearch wildlsearch nwildlsearch iplsearch dbm dbmnz passwd Authenticators: cram_md5 dovecot plaintext spa Routers: accept dnslookup ipliteral manualroute queryprogram redirect Transports: appendfile/maildir autoreply pipe smtp Size of off_t: 8 Configuration file is /etc/exim.conf I'm at something of a loss as to how to proceed. Any recommendations would be well received!

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• Is Berkeley DB a NoSQL solution?

  - by Gregory Burd

  Berkeley DB is a library. To use it to store data you must link the library into your application. You can use most programming languages to access the API, the calls across these APIs generally mimic the Berkeley DB C-API which makes perfect sense because Berkeley DB is written in C. The inspiration for Berkeley DB was the DBM library, a part of the earliest versions of UNIX written by AT&T's Ken Thompson in 1979. DBM was a simple key/value hashtable-based storage library. In the early 1990s as BSD UNIX was transitioning from version 4.3 to 4.4 and retrofitting commercial code owned by AT&T with unencumbered code, it was the future founders of Sleepycat Software who wrote libdb (aka Berkeley DB) as the replacement for DBM. The problem it addressed was fast, reliable local key/value storage. At that time databases almost always lived on a single node, even the most sophisticated databases only had simple fail-over two node solutions. If you had a lot of data to store you would choose between the few commercial RDBMS solutions or to write your own custom solution. Berkeley DB took the headache out of the custom approach. These basic market forces inspired other DBM implementations. There was the "New DBM" (ndbm) and the "GNU DBM" (GDBM) and a few others, but the theme was the same. Even today TokyoCabinet calls itself "a modern implementation of DBM" mimicking, and improving on, something first created over thirty years ago. In the mid-1990s, DBM was the name for what you needed if you were looking for fast, reliable local storage. Fast forward to today. What's changed? Systems are connected over fast, very reliable networks. Disks are cheep, fast, and capable of storing huge amounts of data. CPUs continued to follow Moore's Law, processing power that filled a room in 1990 now fits in your pocket. PCs, servers, and other computers proliferated both in business and the personal markets. In addition to the new hardware entire markets, social systems, and new modes of interpersonal communication moved onto the web and started evolving rapidly. These changes cause a massive explosion of data and a need to analyze and understand that data. Taken together this resulted in an entirely different landscape for database storage, new solutions were needed. A number of novel solutions stepped up and eventually a category called NoSQL emerged. The new market forces inspired the CAP theorem and the heated debate of BASE vs. ACID. But in essence this was simply the market looking at what to trade off to meet these new demands. These new database systems shared many qualities in common. There were designed to address massive amounts of data, millions of requests per second, and scale out across multiple systems. The first large-scale and successful solution was Dynamo, Amazon's distributed key/value database. Dynamo essentially took the next logical step and added a twist. Dynamo was to be the database of record, it would be distributed, data would be partitioned across many nodes, and it would tolerate failure by avoiding single points of failure. Amazon did this because they recognized that the majority of the dynamic content they provided to customers visiting their web store front didn't require the services of an RDBMS. The queries were simple, key/value look-ups or simple range queries with only a few queries that required more complex joins. They set about to use relational technology only in places where it was the best solution for the task, places like accounting and order fulfillment, but not in the myriad of other situations. The success of Dynamo, and it's design, inspired the next generation of Non-SQL, distributed database solutions including Cassandra, Riak and Voldemort. The problem their designers set out to solve was, "reliability at massive scale" so the first focal point was distributed database algorithms. Underneath Dynamo there is a local transactional database; either Berkeley DB, Berkeley DB Java Edition, MySQL or an in-memory key/value data structure. Dynamo was an evolution of local key/value storage onto networks. Cassandra, Riak, and Voldemort all faced similar design decisions and one, Voldemort, choose Berkeley DB Java Edition for it's node-local storage. Riak at first was entirely in-memory, but has recently added write-once, append-only log-based on-disk storage similar type of storage as Berkeley DB except that it is based on a hash table which must reside entirely in-memory rather than a btree which can live in-memory or on disk. Berkeley DB evolved too, we added high availability (HA) and a replication manager that makes it easy to setup replica groups. Berkeley DB's replication doesn't partitioned the data, every node keeps an entire copy of the database. For consistency, there is a single node where writes are committed first - a master - then those changes are delivered to the replica nodes as log records. Applications can choose to wait until all nodes are consistent, or fire and forget allowing Berkeley DB to eventually become consistent. Berkeley DB's HA scales-out quite well for read-intensive applications and also effectively eliminates the central point of failure by allowing replica nodes to be elected (using a PAXOS algorithm) to mastership if the master should fail. This implementation covers a wide variety of use cases. MemcacheDB is a server that implements the Memcache network protocol but uses Berkeley DB for storage and HA to replicate the cache state across all the nodes in the cache group. Google Accounts, the user authentication layer for all Google properties, was until recently running Berkeley DB HA. That scaled to a globally distributed system. That said, most NoSQL solutions try to partition (shard) data across nodes in the replication group and some allow writes as well as reads at any node, Berkeley DB HA does not. So, is Berkeley DB a "NoSQL" solution? Not really, but it certainly is a component of many of the existing NoSQL solutions out there. Forgetting all the noise about how NoSQL solutions are complex distributed databases when you boil them down to a single node you still have to store the data to some form of stable local storage. DBMs solved that problem a long time ago. NoSQL has more to do with the layers on top of the DBM; the distributed, sometimes-consistent, partitioned, scale-out storage that manage key/value or document sets and generally have some form of simple HTTP/REST-style network API. Does Berkeley DB do that? Not really. Is Berkeley DB a "NoSQL" solution today? Nope, but it's the most robust solution on which to build such a system. Re-inventing the node-local data storage isn't easy. A lot of people are starting to come to appreciate the sophisticated features found in Berkeley DB, even mimic them in some cases. Could Berkeley DB grow into a NoSQL solution? Absolutely. Our key/value API could be extended over the net using any of a number of existing network protocols such as memcache or HTTP/REST. We could adapt our node-local data partitioning out over replicated nodes. We even have a nice query language and cost-based query optimizer in our BDB XML product that we could reuse were we to build out a document-based NoSQL-style product. XML and JSON are not so different that we couldn't adapt one to work with the other interchangeably. Without too much effort we could add what's missing, we could jump into this No SQL market withing a single product development cycle. Why isn't Berkeley DB already a NoSQL solution? Why aren't we working on it? Why indeed...

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