cuda/thrust: Trying to sort_by_key 2.8GB of data in 6GB of gpu RAM throws bad_alloc

Posted by Sven K on Stack Overflow See other posts from Stack Overflow or by Sven K
Published on 2012-11-09T10:58:45Z Indexed on 2012/11/09 10:59 UTC
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I have just started using thrust and one of the biggest issues I have so far is that there seems to be no documentation as to how much memory operations require. So I am not sure why the code below is throwing bad_alloc when trying to sort (before the sorting I still have >50% of GPU memory available, and I have 70GB of RAM available on the CPU)--can anyone shed some light on this?

#include <thrust/device_vector.h>
#include <thrust/sort.h>
#include <thrust/random.h>

void initialize_data(thrust::device_vector<uint64_t>& data) {
  thrust::fill(data.begin(), data.end(), 10);
}

#define BUFFERS 3

int main(void) {
  size_t N = 120 * 1024 * 1024;
  char line[256];
  try {
    std::cout << "device_vector" << std::endl;
    typedef thrust::device_vector<uint64_t>  vec64_t;

    // Each buffer is 900MB

    vec64_t c[3] = {vec64_t(N), vec64_t(N), vec64_t(N)};
    initialize_data(c[0]);
    initialize_data(c[1]);
    initialize_data(c[2]);

    std::cout << "initialize_data finished... Press enter";
    std::cin.getline(line, 0);

    // nvidia-smi reports 48% memory usage at this point (2959MB of                 
    // 6143MB)

    std::cout << "sort_by_key col 0" << std::endl;

    // throws bad_alloc

    thrust::sort_by_key(c[0].begin(), c[0].end(),
      thrust::make_zip_iterator(thrust::make_tuple(c[1].begin(),
      c[2].begin())));

    std::cout << "sort_by_key col 1" << std::endl;
    thrust::sort_by_key(c[1].begin(), c[1].end(),
        thrust::make_zip_iterator(thrust::make_tuple(c[0].begin(),
        c[2].begin())));
  } catch(thrust::system_error &e) {
    std::cerr << "Error: " << e.what() << std::endl;
    exit(-1);
  }
  return 0;
}

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