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  • Reading a large file into Perl array of arrays and manipulating the output for different purposes

    - by Brian D.
    Hello, I am relatively new to Perl and have only used it for converting small files into different formats and feeding data between programs. Now, I need to step it up a little. I have a file of DNA data that is 5,905 lines long, with 32 fields per line. The fields are not delimited by anything and vary in length within the line, but each field is the same size on all 5905 lines. I need each line fed into a separate array from the file, and each field within the line stored as its own variable. I am having no problems storing one line, but I am having difficulties storing each line successively through the entire file. This is how I separate the first line of the full array into individual variables: my $SampleID = substr("@HorseArray", 0, 7); my $PopulationID = substr("@HorseArray", 9, 4); my $Allele1A = substr("@HorseArray", 14, 3); my $Allele1B = substr("@HorseArray", 17, 3); my $Allele2A = substr("@HorseArray", 21, 3); my $Allele2B = substr("@HorseArray", 24, 3); ...etc. My issues are: 1) I need to store each of the 5905 lines as a separate array. 2) I need to be able to reference each line based on the sample ID, or a group of lines based on population ID and sort them. I can sort and manipulate the data fine once it is defined in variables, I am just having trouble constructing a multidimensional array with each of these fields so I can reference each line at will. Any help or direction is much appreciated. I've poured over the Q&A sections on here, but have not found the answer to my questions yet. Thanks!! -Brian

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  • Python: Cannot concatenate str and NoneType objects

    - by Chase Higgins
    sql = """ INSERT INTO [SCHOOLINFO] VALUES( '""" + self.accountNo + """', '""" + self.altName + """', '""" + self.address1 + """', '""" + self.address2 + """', '""" + self.city + """', '""" + self.state + """', '""" + self.zipCode + """', '""" + self.phone1 + """', '""" + self.phone2 + """', '""" + self.fax + """', '""" + self.contactName + """', '""" + self.contactEmail + """', '""" + self.prize_id + """', '""" + self.shipping + """', '""" + self.chairTempPass + """', '""" + self.studentCount + """' ) """; I have the following code and Python keeps throwing the error that it cannon concatenate strings and nonetype objects. The thing is I have verified every variable here is in fact a string and is not null. I have been stuck on this for quite some time today, and any help would be greatly appreciated.

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  • rpy2: Converting a data.frame to a numpy array

    - by Mike Dewar
    I have a data.frame in R. It contains a lot of data : gene expression levels from many (125) arrays. I'd like the data in Python, due mostly to my incompetence in R and the fact that this was supposed to be a 30 minute job. I would like the following code to work. To understand this code, know that the variable path contains the full path to my data set which, when loaded, gives me a variable called immgen. Know that immgen is an object (a Bioconductor ExpressionSet object) and that exprs(immgen) returns a data frame with 125 columns (experiments) and tens of thousands of rows (named genes). robjects.r("load('%s')"%path) # loads immgen e = robjects.r['data.frame']("exprs(immgen)") expression_data = np.array(e) This code runs, but expression_data is simply array([[1]]). I'm pretty sure that e doesn't represent the data frame generated by exprs() due to things like: In [40]: e._get_ncol() Out[40]: 1 In [41]: e._get_nrow() Out[41]: 1 But then again who knows? Even if e did represent my data.frame, that it doesn't convert straight to an array would be fair enough - a data frame has more in it than an array (rownames and colnames) and so maybe life shouldn't be this easy. However I still can't work out how to perform the conversion. The documentation is a bit too terse for me, though my limited understanding of the headings in the docs implies that this should be possible. Anyone any thoughts?

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  • cakephp paginate multiple habtm

    - by izmanromli
    hi guys, i have multiple habtm like these : // User model var $hasMany = array('Post'); // Post model var $hasAndBelongsToMany = array('Category', 'Tag'); // Category model var $hasAndBelongsToMany = array('Post'); // Tag model var $hasAndBelongsToMany = array('Post'); I tried to fetch all post along with its user and tags (within a certain category), somehow if i fetch tags, the result was wrong. $this->paginate = array ( 'Post' => array ( 'limit' => 2, 'fields' => array( 'Post.title', 'Post.content', 'Post.slug', 'Post.created', 'Tag.name', 'User.username', 'User.created', 'User.post_count', 'User.avatar_file_name'), 'joins' => array ( array( 'table' => 'categories_posts', 'alias' => 'CategoriesPost', 'type' => 'inner', 'conditions'=> array('CategoriesPost.post_id = Post.id') ), // FETCH USER array( 'table' => 'users', 'alias' => 'User', 'type' => 'inner', 'conditions'=> array('Post.user_id = User.id') ), // FETCH TAGS array( 'table' => 'posts_tags', 'alias' => 'PostsTag', 'type' => 'inner', 'conditions'=> array('PostsTag.post_id = Post.id') ), array( 'table' => 'tags', 'alias' => 'Tag', 'type' => 'inner', 'conditions'=> array('Tag.id = PostsTag.tag_id') ), array( 'table' => 'categories', 'alias' => 'Category', 'type' => 'inner', 'conditions'=> array('Category.id = CategoriesPost.category_id', 'Category.slug' => $slug) ) ) ) ); $posts = $this->paginate(); could anyone gimme a solution since i'm a newbie? many thanks...

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  • javascript - How to change a button from another function?

    - by Fernando SBS
    var ButtonFarmAtivada = new Array(); function X() { var tableCol = dom.cn("td"); //cell 0 //create start checkbox button ButtonFarmAtivada[index] = createInputButton("checkbox", index); ButtonFarmAtivada[index].name = "buttonFarmAtivada_"+index; ButtonFarmAtivada[index].checked = GM_getValue("farmAtivada_"+index, true); FM_log(3,"checkboxFarm "+(index)+" = "+GM_getValue("farmAtivada_"+index)); ButtonFarmAtivada[index].addEventListener("click", function() { rp_farmAtivada(index); }, false); tableCol.appendChild(ButtonFarmAtivada[i]); tableRow.appendChild(tableCol); // add the cell } 1) is it possible to create the button inside an array as I'm trying to do in that example? like an array of buttons? 2) I ask that because I will have to change this button later from another function, and I'm trying to do that like this (not working): function rp_marcadesmarcaFarm(valor) { var vListID = getAllVillageId().toString(); FM_log(4,"MarcaDesmarcaFarm + vListID="+vListID); var attackList = vListID.split(","); for (i = 0; i <= attackList.length; i++) { FM_log(3, "Marca/desmarca = "+i+" "+buttonFarmAtivada[i].Checked); ButtonFarmAtivada[i].Checked = valor; }; };

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  • Javascript: Adding selected text to an array

    - by joeybaker
    My goal: each time a user selects text, and clicks a button, that text gets added to an array. The problem: each time the button is pressed, the all objects of the array get overridden with the currently selected text. I'd really appreciate help changing the behavior so that the selected text doesn't override all previous array items. <script type="text/javascript"> var selects = new Array(); selects.push("1"); function getSelText() { var i = 0; while (i<1) { var txt = [null]; var x = 0; if (window.getSelection) { txt[x] = window.getSelection(); } else if (document.getSelection) { txt[x] = document.getSelection(); } else if (document.selection) { txt[x] = document.selection.createRange().text; } else return; selects.push(txt); x++; i++; }; document.menu.selectedtext.value = selects; } </script> <form class="menu" name="menu"> <input type="button" value="highlight" class="highlightButton" onmousedown="getSelText()"/> <textarea name="selectedtext" rows="5" cols="20"></textarea> </form> <p>Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.</p>

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  • GAE Datastore: persisting referenced objects

    - by David
    Two "I'm sorries" to begin with: 1) I've looked for a solution (here, and elsewhere), and couldn't find the answer. 2) English is not my mother tongue, so I may have some typos and the sort - please ignore them. To the point: I am trying to persist Java objects to the GAE datastore. I am not sure as to how to persist object having ("non-trivial") referenced object. That is, assume I have the following. public class Father { String name; int age; Vector<Child> offsprings; //this is what I call "non-trivial" reference //ctor, getters, setters... } public class Child { String name; int age; Father father; //this is what I call "non-trivial" reference //ctor, getters, setters... } The name field is unique in each type domain, and is considered a Primary-Key. In order to persist the "trivial" (String, int) fields, all I need is to add the correct annotation. So far so good. However, I don't understand how should I persist the home-brewed (Child, Father) types referenced. Should I: Convert each such reference to hold the Primary-Key (a name String, in this example) instead of the "actual" object. So, Vector<Child> offsprings; becomes Vector<String> offspringsNames; ? If that is the case, how do I handle the object at run-time? Do I just query for the Primary-Key from Class.getName, to retrieve the refrenced objects? Convert each such reference to hold the actual Key provided to me by the Datastore upon the proper put() operation? So, Vector<Child> offsprings; becomes Vector<Key> offspringsHashKeys; ? I would very much appreciate all kinds of comments. I have read ALL the offical relevant GAE docs/example. Throughout, they always persist "trivial" references, natively supported by the Datastore (e.g. in the Guestbook example, only Strings, and Longs). Many thanks, David

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  • Python: can't pickle module objects error

    - by adum
    i'm trying to pickle a big class and getting "TypeError: can't pickle module objects". despite looking around the web, i can't exactly figure out what this means. and i'm not sure which "module object" is causing the trouble. is there a way to find the culprit? the stack trace doesn't seem to indicate anything.

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  • Template Sort In C++

    - by wdow88
    Hey all, I'm trying to write a sort function but am having trouble figuring out how to initialize a value, and making this function work as a generic template. The sort works by: Find a pair =(ii,jj)= with a minimum value = ii+jj = such at A[ii]A[jj] If such a pair exists, then swap A[ii] and A[jj] else break; The function I have written is as follows: template <typename T> void sort(T *A, int size) { T min =453; T temp=0; bool swapper = true; while(swapper) { swapper = false; int index1 = 0, index2 = 0; for (int ii = 0; ii < size-1; ii++){ for (int jj = ii + 1; jj < size; jj++){ if((min >= (A[ii]+A[jj])) && (A[ii] > A[jj])){ min = (A[ii]+A[jj]); index1 = ii; index2 = jj; swapper = true; } } } if (!swapper) return; else { temp = A[index1]; A[index1] = A[index2]; A[index2] = temp; sort(A,size); } } } This function will successfully sort an array of integers, but not an array of chars. I do not know how to properly initialize the min value for the start of the comparison. I tried initializing the value by simply adding the first two elements of the array together (min = A[0] + A[1]), but it looks to me like for this algorithm it will fail. I know this is sort of a strange type of sort, but it is practice for a test, so thanks for any input.

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  • Javascript objects: get parent

    - by Dänu
    Hey Guys I got some question about nested javascript objects (is it me, google or is javascript quite poorly documented?). Now, I got the following (nested) object: obj: { subObj: { 'hello world' } }; next thing I do is to reference the subobject like this: var s = obj.subObj; now what I would like to do, is to get a reference to the object obj out of the variable s. Something like: var o = s.parent; Is this somehow possible?

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  • C# wrapper for array of three pointers

    - by fergs
    I'm currently working on a C# wrapper to work with Dallmeier Common API light. See previous posting: http://stackoverflow.com/questions/2430089/c-wrapper-and-callbacks I've got pretty much everything 'wrapped' but I'm stuck on wrapping a callback which contains an array of three pointers & an array integers: dlm_setYUVDataCllback int(int SessionHandle, void (*callback) (long IPlayerID, unsigned char** yuvData, int* pitch, int width, int height, int64_t ts, char* extData)) Function Set callback, to receive current YUV image. Arguments SessionHandle: handle to current session. Return PlayerID (see callback). Callback - IPlayerId: id to the Player object - yuvData: array of three pointers to Y, U and V part of image The YUV format used is YUV420 planar (not packed). char *y = yuvData[0]; char *u = yuvData[1]; char *v = yuvData[2]; - pitch: array of integers for pitches for Y, U and V part of image - width: intrinsic width of image. - height - ts : timestamp of current frame - extData: additional data to frame How do I go about wrapping this in c#? Any help is much appreciated.

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  • Cakephp how to use Set Class to make an assoc array?

    - by michael
    I have the output array from a $Model-find() query which also pulls data from a hasMany relationship: Array( [Parent] => Array ( [id] => 1 ) [Child] => Array ( [0] => Array ( [id] => aaa [score] => 3 [src] => stage6/tn~4bbb38cc-0018-49bf-96a9-11a0f67883f5.jpg [parent_id] => 1 ) [1] => Array ( [id] => bbb [score] => 5 [src] => stage0/tn~4bbb38cc-00ac-4b25-b074-11a0f67883f5.jpg [parent_id] => 1 ) [2] => Array ( [id] => ccc [score] => 2 [src] => stage4/tn~4bbb38cc-01c8-44bd-b71d-11a0f67883f5.jpg [parent_id] => 1 ) ) ) I'd like to transform this output into something like this, where the child id is the key to additional child attributes: Array( [aaa] => Array ( [score] => 3 [src] => stage6/tn~4bbb38cc-0018-49bf-96a9-11a0f67883f5.jpg ) [bbb] => Array ( [score] => 5 [src] => stage0/tn~4bbb38cc-00ac-4b25-b074-11a0f67883f5.jpg ) [ccc] => Array ( [score] => 2 [src] => stage4/tn~4bbb38cc-01c8-44bd-b71d-11a0f67883f5.jpg ) } Is there an easy way to use Set::extract, Set::combine, Set::insert, etc. to do this efficiently? I cannot figure it out.

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  • Extract attributes from NSManagedObject array.

    - by Pavel Peroutka
    NSFetchRequest *req = [NSFetchRequest init]; NSEntityDescription *descr = [NSEntityDescription entityForName:@"City" inManagedObjectContext:context]; [req setEntity:descr]; NSSortDescriptor *sort = [[NSSortDescriptor alloc] initWithKey:@"streetName" ascending:YES]; [req setSortDescriptors:[NSArray arrayWithObject:sort]]; [sort release]; //fetch NSError *error; NSArray *result = [context executeFetchRequest:req error:&error]; //extract names NSMutableArray *streets = [[NSMutableArray alloc] init]; for () { ??? = [array objectAtIndex:i]; [streets addObject:name]; } I expected Core Data to be little more intuitive. I am new in it and I could use some help. I fetched all objects(rows) from the entity (table) City. Now I have an array of objects. From the array I need to extract the attribute “streetName” to an array which will feed the picker. I figured I need to do it in the loop but I could not figure out the way to do it. Please help. I have a background with SQL but Core Data is still a big mystery to me. Is there any publication which would take a SQL statement and show comparable Core Data syntax? Thanks.

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  • Dynamic Objects for ASPxGridview

    - by André Snede Hansen
    I have a dictionary that is populated with data from a table, we are doing this so we can hold multiple SQL tables inside this object. This approached cannot be discussed. The Dictionary is mapped as a , and contains SQL column name and the value, and each dictionary resembles one row entry in the Table. Now I need to display this on a editable gridview, preferably the ASPxGridView. I already figured out that I should use Dynamic Objects(C#), and everything worked perfectly, up to the part where I find out that the ASPxGridview is built in .NET 2.0 and not 4.0 where Dynamic objects where implemented, therefor I cannot use it... As you cannot, to my knowledge, add rows to the gridview programmatically, I am out of ideas, and seek your help guys! protected void Page_Load(object sender, EventArgs e) { UserValidationTableDataProvider uvtDataprovider = _DALFactory.getProvider<UserValidationTableDataProvider>(typeof(UserValidationTableEntry)); string[] tableNames = uvtDataprovider.TableNames; UserValidationTableEntry[] entries = uvtDataprovider.getAllrecordsFromTable(tableNames[0]); userValidtionTableGridView.Columns.Clear(); Dictionary<string, string> firstEntry = entries[0].Values; foreach (KeyValuePair<string, string> kvp in firstEntry) { userValidtionTableGridView.Columns.Add(new GridViewDataColumn(kvp.Key)); } var dynamicObjectList = new List<dynamic>(); foreach (UserValidationTableEntry uvt in entries) { //dynamic dynObject = new MyDynamicObject(uvt.Values); dynamicObjectList.Add(new MyDynamicObject(uvt.Values)); } } public class MyDynamicObject : DynamicObject { Dictionary<string, string> properties = new Dictionary<string, string>(); public MyDynamicObject(Dictionary<string, string> dictio) { properties = dictio; } // If you try to get a value of a property // not defined in the class, this method is called. public override bool TryGetMember(GetMemberBinder binder, out object result) { // Converting the property name to lowercase // so that property names become case-insensitive. string name = binder.Name.ToLower(); string RResult; // If the property name is found in a dictionary, // set the result parameter to the property value and return true. // Otherwise, return false. bool wasSuccesfull = properties.TryGetValue(name, out RResult); result = RResult; return wasSuccesfull; } // If you try to set a value of a property that is // not defined in the class, this method is called. public override bool TrySetMember(SetMemberBinder binder, object value) { // Converting the property name to lowercase // so that property names become case-insensitive. properties[binder.Name.ToLower()] = value.ToString(); // You can always add a value to a dictionary, // so this method always returns true. return true; } } Now, I am almost certain that his "Dynamic object" approach, is not the one I can go with from here on. I hope you guys can help me :)!

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  • linq NullReferenceException while checking for null reference

    - by Odrade
    I have the following LINQ query: List<FileInputItem> inputList = GetInputList(); var results = from FileInputItem f in inputList where ( Path.GetDirectoryName(f.Folder).ToLower().Trim() == somePath || Path.GetDirectoryName(f.Folder).ToLower().Trim() == someOtherPath ) && f.Expression == null select f; Every time this query is executed, it generates a NullReferenceException. If I remove the condition f.Expression == null or change it to f.Expression != null, the query executes normally (giving the wrong results, of course). The relevant bits of FileInputItem look like this: [Serializable] public class FileInputItem { [XmlElement("Folder")] public string Folder { get; set; } [XmlElement("Expression")] public string Expression { get; set; } /*SNIP. Irrelevant properties */ } I'm new to LINQ to objects, so I'm probably missing something fundamental here. What's the deal?

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  • Comparing two objects that are the same in MbUnit

    - by Coppermill
    From MBUnit I am trying to check if the values of two objects are the same using Assert.AreSame(RawDataRow, result); However I am getting the following fail: ====================== Expected Value & Actual Value : {RawDataRow: CentreID = "CentreID1", CentreLearnerRef = "CentreLearnerRef1", ContactID = 1, DOB = 2010-05-05T00:00:00.0000000, Email = "Email1", ErrorCodes = "ErrorCodes1", ErrorDescription = "ErrorDescription1", FirstName = "FirstName1"} Remark : Both values look the same when formatted but they are distinct instances. ====================== I don't want to have to go through each property, can I do this from MbUnit

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  • Traverse list to add elements using .NET

    - by Addie
    I have a list of objects. Each object has an integer quantity and a DateTime variable which contains a month and year value. I'd like to traverse the list and pad the list by adding missing months (with quantity 0) so that all consecutive months are represented in the list. What would be the best way to accomplish this? Example: Original List { Jan10, 3 }, { Feb10, 4 }, { Apr10, 2 }, { May10, 2 }, { Aug10, 3 }, { Sep10, -3 }, { Oct10, 6 }, { Nov10, 3 }, { Dec10, 7 }, { Feb11, 3 } New List { Jan10, 3 }, { Feb10, 4 }, {Mar10, 0}, { Apr10, 2 }, { May10, 2 }, { Jun10, 0 }, { Jul10, 0 } { Aug10, 3 }, { Sep10, -3 }, { Oct10, 6 }, { Nov10, 3 }, { Dec10, 7 }, { Jan11, 0 }, { Feb11, 3 }

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  • Small objects allocator

    - by Felics
    Hello, Has anybody used SmallObjectAllocator from Modern C++ Design by Andrei Alexandrescu in a big project? I want to implement this allocator but I need some opinions about it before using it in my project. I made some tests and it seems very fast, but the tests were made in a small test environment. I want to know how fast it is when are lots of small objects(like events, smart pointers, etc) and how much extra memory it uses.

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  • get average from set of objects in django

    - by dotty
    Hay, i have a simple rating system for a property. You give it a mark out of 5 (stars). The models are defined like this def Property(models.Model) # stuff here def Rating(models.Model) property = models.ForeignKey(Property) stars = models.IntegerField() What i want to do is get a property, find all the Rating objects, collect them, then get the average 'stars' from them. any ideas how to do this?

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  • How to access core data objects from Javascript?

    - by Eli
    How can I gain access to Core Data objects from Javascript/WebKit on Mac OS X? I've made custom subclasses of NSManagedObject for each of my tables, with accessors defined using @property/@dynamic for each attribute, but neither isSelectorExcludedFromWebScript: or isKeyExcludedFromWebScript: is called for any of them, so Javascript just stops when I try to access any of the attributes. It returns 'undefined' if I access it as a property (eg business.name ) and javascript execution stops if I access it as a function (eg business.name() ).

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  • Javascript expando objects

    - by xyz
    What are expando objects in javascripts? For what purpose we need this ? Any complete example will be appreciated I found 1 article here Javascript: The red-headed stepchild of web development Thanks

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