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• How to perform undirected graph processing from SQL data

  - by recipriversexclusion

  I ran into the following problem in dynamically creating topics for our ActiveMQ system: I have a number of processes (M_1, ..., M_n), where n is not large, typically 5-10. Some of the processes will listen to the output of others, through a message queue; these edges are specified in an XML file, e.g. <link from="M1" to="M3"</link> <link from="M2" to="M4"</link> <link from="M3" to="M4"</link> etc. The edges are sparse, so there won't be many of them. I will parse this XML and store this information in an SQL DB, one table for nodes and another for edges. Now, I need to dynamically create strings of the form M1.exe --output_topic=T1 M2.exe --output_topic=T2 M3.exe --input_topic=T1 --output_topic=T3 M4.exe --input_topic=T2 --input_topic=T3 where the tags are sequentially generated. What is the best way to go about querying SQL to obtain these relationships? Are there any tools or other tutorials you can point me to? I've never done graps with SQL. Using SQL is imperative, because we use it for other stuff, too. Thanks!

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• Bioperl, equivalent of IO::ScalarArray for array of Seq objects?

  - by Ryan Thompson

  In perl, we have IO::ScalarArray for treating the elements of an array like the lines of a file. In BioPerl, we have Bio::SeqIO, which can produce a filehandle that reads and writes Bio::Seq objects instead of strings representing lines of text. I would like to do a combination of the two: I would like to obtain a handle that reads successive Bio::Seq objects from an array of such objects. Is there any way to do this? Would it be trivial for me to implement a module that does this? My reason for wanting this is that I would like to be able to write a subroutine that accepts either a Bio::SeqIO handle or an array of Bio::Seq objects, and I'd like to avoid writing separate loops based on what kind of input I get. Perhaps the following would be better than writing my own IO module? sub process_sequences { my $input = $_[0]; # read either from array of Bio::Seq or from Bio::SeqIO my $nextseq; if (ref $input eq 'ARRAY') { my $pos = 0 $nextseq = sub { return $input->[$pos++] if $pos < @$input}; } } else { $nextseq = sub { $input->getline(); } } while (my $seq = $nextseq->()) { do_cool_stuff_with($seq) } }

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• m2crypto aes-256-cbc not working against encoded openssl files.

  - by Gary

  $ echo 'this is text' > text.1 $ openssl enc -aes-256-cbc -a -k "thisisapassword" -in text.1 -out text.enc $ openssl enc -d -aes-256-cbc -a -k "thisisapassword" -in text.enc -out text.2 $ cat text.2 this is text I can do this with openssl. Now, how do I do the same in m2crypto. Documentation is lacking this. I looked at the snv test cases, still nothing there. I found one sample, http://passingcuriosity.com/2009/aes-encryption-in-python-with-m2crypto/ (changed to aes_256_cbc), and it will encrypted/descrypt it's own strings, but it cannot decrypt anything made with openssl, and anything it encrypts isn't decryptable from openssl. I need to be able enc/dec with aes-256-cbc as have many files already encrypted with this and we have many other systems in place that also handle the aes-256-cbc output just fine. We use password phrases only, with no IV. So setting the IV to \0 * 16 makes sense, but I'm not sure if this is also part of the problem. Anyone have any working samples of doing AES 256 that is compatible with m2crypto? I will also be trying some additional libraries and seeing if they work any better.

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• JS sort works in Firefox but not IE - can't work out why

  - by Max Williams

  I have a line in a javascript function that sort an array of objects based on the order of another array of strings. This is working in firefox but not in IE and i don't know why. Here's what my data looks like going into the sort call. (I'm using an array of three items just to illustrate the point here). //cherry first then the rest in alphabetical order originalData = ['cherry','apple','banana','clementine','nectarine','plum'] //data before sorting - note how clementine is second item - we wan to to to be after apple and banana csub = [ {"value":"cherry","data":["cherry"],"result":"cherry"}, {"value":"clementine","data":["clementine"],"result":"clementine"}, {"value":"apple","data":["apple"],"result":"apple"}, {"value":"banana","data":["banana"],"result":"banana"}, {"value":"nectarine","data":["nectarine"],"result":"nectarine"}, {"value":"plum","data":["plum"],"result":"plum"} ] //after sorting, csub has been rearranged but still isn't right: clementine is before banana csubSorted = [ {"value":"cherry","data":["cherry"],"result":"cherry"}, {"value":"apple","data":["apple"],"result":"apple"}, {"value":"clementine","data":["clementine"],"result":"clementine"}, {"value":"banana","data":["banana"],"result":"banana"}, {"value":"nectarine","data":["nectarine"],"result":"nectarine"}, {"value":"plum","data":["plum"],"result":"plum"} ] Here's the actual sort code: csubSorted = csub.sort(function(a,b){ return (originalData.indexOf(a.value) > originalData.indexOf(b.value)); }); Can anyone see why this wouldn't work? Is the basic javascript sort function not cross-browser compatible? Can i do this a different way (eg with jquery) that would be cross-browser? grateful for any advice - max

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• Treetop basic parsing and regular expression usage

  - by ucint

  I'm developing a script using the ruby Treetop library and having issues working with its syntax for regex's. First off, many regular expressions that work in other settings dont work the same in treetop. This is my grammar: (myline.treetop) grammar MyLine rule line string whitespace condition end rule string [\S]* end rule whitespace [\s]* end rule condition "new" / "old" / "used" end end This is my usage: (usage.rb) require 'rubygems' require 'treetop' require 'polyglot' require 'myline' parser = MyLineParser.new p parser.parse("randomstring new") This should find the word new for sure and it does! Now I wont to extend it so that it can find new if the input string becomes "randomstring anotherstring new yetanother andanother" and possibly have any number of strings followed by whitespace (tab included) before and after the regex for rule condition. In other words, if I pass it any sentence with the word "new" etc in it, it should be able to match it. So let's say I change my grammar to: rule line string whitespace condition whitespace string end Then, it should be able to find a match for: p parser.parse("randomstring new anotherstring") So, what do I have to do to allow the string whitespace to be repeated before and after condition? If I try to write this: rule line (string whitespace)* condition (whitespace string)* end , it goes in an infinite loop. If i replace the above () with [], it returns nil In general, regex's return a match when i use the above, but treetop regex's dont. Does anyone have any tips/points on how to go about this? Plus, since there isn't much documentation for treetop and the examples are either too trivial or too complex, is there anyone who knows a more thorough documentation/guide for treetop?

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• Why does ANTLR not parse the entire input?

  - by Martin Wiboe

  Hello, I am quite new to ANTLR, so this is likely a simple question. I have defined a simple grammar which is supposed to include arithmetic expressions with numbers and identifiers (strings that start with a letter and continue with one or more letters or numbers.) The grammar looks as follows: grammar while; @lexer::header { package ConFreeG; } @header { package ConFreeG; import ConFreeG.IR.*; } @parser::members { } arith: term | '(' arith ( '-' | '+' | '*' ) arith ')' ; term returns [AExpr a]: NUM { int n = Integer.parseInt($NUM.text); a = new Num(n); } | IDENT { a = new Var($IDENT.text); } ; fragment LOWER : ('a'..'z'); fragment UPPER : ('A'..'Z'); fragment NONNULL : ('1'..'9'); fragment NUMBER : ('0' | NONNULL); IDENT : ( LOWER | UPPER ) ( LOWER | UPPER | NUMBER )*; NUM : '0' | NONNULL NUMBER*; fragment NEWLINE:'\r'? '\n'; WHITESPACE : ( ' ' | '\t' | NEWLINE )+ { $channel=HIDDEN; }; I am using ANTLR v3 with the ANTLR IDE Eclipse plugin. When I parse the expression (8 + a45) using the interpreter, only part of the parse tree is generated: http://imgur.com/iBaEC.png Why does the second term (a45) not get parsed? The same happens if both terms are numbers. Thank you, Martin Wiboe

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• Generating JavaScript in C# and subsequent testing

  - by Codebrain

  We are currently developing an ASP.NET MVC application which makes heavy use of attribute-based metadata to drive the generation of JavaScript. Below is a sample of the type of methods we are writing: function string GetJavascript<T>(string javascriptPresentationFunctionName, string inputId, T model) { return @"function updateFormInputs(value){ $('#" + inputId + @"_SelectedItemState').val(value); $('#" + inputId + @"_Presentation').val(value); } function clearInputs(){ " + helper.ClearHiddenInputs<T>(model) + @" updateFormInputs(''); } function handleJson(json){ clearInputs(); " + helper.UpdateHiddenInputsWithJson<T>("json", model) + @" updateFormInputs(" + javascriptPresentationFunctionName + @"()); " + model.GetCallBackFunctionForJavascript("json") + @" }"; } This method generates some boilerplace and hands off to various other methods which return strings. The whole lot is then returned as a string and written to the output. The question(s) I have are: 1) Is there a nicer way to do this other than using large string blocks? We've considered using a StringBuilder or the Response Stream but it seems quite 'noisy'. Using string.format starts to become difficult to comprehend. 2) How would you go about unit testing this code? It seems a little amateur just doing a string comparison looking for particular output in the string. 3) What about actually testing the eventual JavaScript output? Thanks for your input!

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• Why use bin2hex when inserting binary data from PHP into MySQL?

  - by Atli

  I heard a rumor that when inserting binary data (files and such) into MySQL, you should use the bin2hex() function and send it as a HEX-coded value, rather than just use mysql_real_escape_string on the binary string and use that. // That you should do $hex = bin2hex($raw_bin); $sql = "INSERT INTO `table`(`file`) VALUES (X'{$hex}')"; // Rather than $bin = mysql_real_escape_string($raw_bin); $sql = "INSERT INTO `table`(`file`) VALUES ('{$bin}')"; It is supposedly for performance reasons. Something to do with how MySQL handles large strings vs. how it handles HEX-coded values However, I am having a hard time confirming this. All my tests indicate the exact oposite; that the bin2hex method is ~85% slower and uses ~24% more memory. (I am testing this on PHP 5.3, MySQL 5.1, Win7 x64 - Using a farily simple insert loop.) For instance, this graph shows the private memory usage of the mysqld process while the test code was running: Does anybody have any explainations or reasources that would clarify this? Thanks.

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• restrict documents for mapreduce with mongoid

  - by theBernd

  I implemented the pearson product correlation via map / reduce / finalize. The missing part is to restrict the documents (representing users) to be processed via a filter query. For a simple query like mapreduce(mapper, reducer, :finalize => finalizer, :query => { :name => 'Bernd' }) I get this to work. But my filter criteria is a little bit more complicated: I have one set of preferences which need to have at least one common element and another set of preferences which may not have a common element. In a later step I also want to restrict this to documents (users) within a certain geographical distance. Currently I have this code working in my map function, but I would prefer to separate this into either query params as supported by mongoid or a javascript function. All my attempts to solve this failed since the code is either ignored or raises an error. I did a couple of tests. A regular find like User.where(:name.in => ['Arno', 'Bernd', 'Claudia']) works and returns #<Mongoid::Criteria:0x00000101f0ea40 @selector={:name=>{"$in"=>["Arno", "Bernd", "Claudia"]}}, @options={}, @klass=User, @documents=[]> Trying the same with mapreduce User.collection. mapreduce(mapper, reducer, :finalize => finalizer, :query => { :name.in => ['Arno', 'Bernd', 'Claudia'] }) fails with `serialize': keys must be strings or symbols (TypeError) in bson-1.1.5 The intermediate query parameter looks like this :query=>{#<Mongoid::Criterion::Complex:0x00000101a209e8 @key=:name, @operator="in">=>["Arno", "Bernd", "Claudia"]} and at least @operator looks a bit weird to me. I'm also uncertain if the class name can be omitted. BTW - I'm using mongodb 1.6.5-x86_64, and the mongoid 2.0.0.beta.20, mongo 1.1.5 and bson 1.1.5 gems on MacOS. What am I doing wrong? Thanks in advance.

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• return an ArrayList method

  - by Bopeng Liu

  This is a drive method for two other classes. which i posted here http://codereview.stackexchange.com/questions/33148/book-program-with-arraylist I need some help for the private static ArrayList getAuthors(String authors) method. I am kind a beginner. so please help me finish this drive method. or give me some directions. Instruction some of the elements of the allAuthors array contain asterisks “*” between two authors names. The getAuthors method uses this asterisk as a delimiter between names to store them separately in the returned ArrayList of Strings. import java.util.ArrayList; public class LibraryDrive { public static void main(String[] args) { String[] titles = { "The Hobbit", "Acer Dumpling", "A Christmas Carol", "Marley and Me", "Building Java Programs", "Java, How to Program" }; String[] allAuthors = { "Tolkien, J.R.", "Doofus, Robert", "Dickens, Charles", "Remember, SomeoneIdont", "Reges, Stuart*Stepp, Marty", "Deitel, Paul*Deitel, Harvery" }; ArrayList<String> authors = new ArrayList<String>(); ArrayList<Book> books = new ArrayList<Book>(); for (int i = 0; i < titles.length; i++) { authors = getAuthors(allAuthors[i]); Book b = new Book(titles[i], authors); books.add(b); authors.remove(0); } Library lib = new Library(books); System.out.println(lib); lib.sort(); System.out.println(lib); } private static ArrayList<String> getAuthors(String authors) { ArrayList books = new ArrayList<String>(); // need help here. return books; } }

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• Is there a Boost (or other common lib) type for matrices with string keys?

  - by mohawkjohn

  I have a dense matrix where the indices correspond to genes. While gene identifiers are often integers, they are not contiguous integers. They could be strings instead, too. I suppose I could use a boost sparse matrix of some sort with integer keys, and it wouldn't matter if they're contiguous. Or would this still occupy a great deal of space, particularly if some genes have identifiers that are nine digits? Further, I am concerned that sparse storage is not appropriate, since this is an all-by-all matrix (there will be a distance in each and every cell, provided the gene exists). I'm unlikely to need to perform any matrix operations (e.g., matrix multiplication). I will need to pull vectors out of the matrix (slices). It seems like the best type of matrix would be keyed by a Boost unordered_map (a hash map), or perhaps even simply an STL map. Am I looking at this the wrong way? Do I really need to roll my own? I thought I saw such a class somewhere before. Thanks!

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• Finding usage of jQuery UI in a big ugly codebase

  - by Daniel Magliola

  I've recently inherited the maintenance of a big, ugly codebase for a production website. Poke your eyes out ugly. And though it's big, it's mostly PHP code, it doesn't have much JS, besides a few "ajaxy" things in the UI. Our main current problem is that the site is just too heavy. Homepage weighs in at 1.6 Mb currently, so I'm trying to clean some stuff out. One of the main wasters is that every single page includes the jQuery UI library, but I don't think it's used at all. It's definitely not being used in the homepage and in most pages, so I want to only include the where necessary. I'm not really experienced with jQuery, i'm more of a Prototype guy, so I'm wondering. Is there anything I could search for that'd let me know where jQuery UI is being used? What i'm looking for is "common strings", component names, etc For example, if this was scriptaculous, i'd look for things like "Draggable", "Effect", etc. Any suggestions for jQuery UI? (Of course, if you can think of a more robust way of removing the tag from pages that don't use it without breaking everything, I'd love to hear about it) Thanks!! Daniel

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• F# exercise help - Beginner

  - by bobjink

  I hope you can help me with these exercises I have been stuck with. I am not in particular looking for the answers. Tips that help me solve them myself are just as good :) 1. Write a function implode : char list - string so that implode s returns the characters concatenated into a string: let implode (cArray:char list) = List.foldBack (+) 0 cArray;; Error. I am thinking that i need to cast every char to strings before I do the above. I bet however, that there is a much simpler and better solution. 2. Write a function palindrome : string - bool, so that palindrome s returns true if the string s is a palindrome let isIdentical cArray1 cArray2 = (cArray1 = cArray2);; let palinDrome (word:string) = isIdentical(word.ToCharArray(), Array.rev(word.ToCharArray()));; I get the value: val palinDrome : string - (char [] * char [] - bool), which is not what I want. 3. Write a function combinePair : int list - int list so that combinePair xs returns the list with elements from xs combined into pairs. If xs contains an odd number of elements, then the last element is thrown away: I have no idea for this one.

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• Using Pylint with Django

  - by rcreswick

  I would very much like to integrate pylint into the build process for my python projects, but I have run into one show-stopper: One of the error types that I find extremely useful--:E1101: *%s %r has no %r member*--constantly reports errors when using common django fields, for example: E1101:125:get_user_tags: Class 'Tag' has no 'objects' member which is caused by this code: def get_user_tags(username): """ Gets all the tags that username has used. Returns a query set. """ return Tag.objects.filter( ## This line triggers the error. tagownership__users__username__exact=username).distinct() # Here is the Tag class, models.Model is provided by Django: class Tag(models.Model): """ Model for user-defined strings that help categorize Events on on a per-user basis. """ name = models.CharField(max_length=500, null=False, unique=True) def __unicode__(self): return self.name How can I tune Pylint to properly take fields such as objects into account? (I've also looked into the Django source, and I have been unable to find the implementation of objects, so I suspect it is not "just" a class field. On the other hand, I'm fairly new to python, so I may very well have overlooked something.) Edit: The only way I've found to tell pylint to not warn about these warnings is by blocking all errors of the type (E1101) which is not an acceptable solution, since that is (in my opinion) an extremely useful error. If there is another way, without augmenting the pylint source, please point me to specifics :) See here for a summary of the problems I've had with pychecker and pyflakes -- they've proven to be far to unstable for general use. (In pychecker's case, the crashes originated in the pychecker code -- not source it was loading/invoking.)

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• Strange Behaviour in Swift: constant defined with LET but behaving like a variable defined with VAR

  - by Sam

  Stuck on the below for a day! Any insight would be greatly appreciated. The constant in the first block match0 behaves as expected. The constant defined in the second block does not behave as nicely in the face of a change to its "source": var str = "+y+z*1.0*sum(A1:A3)" if let range0 = str.rangeOfString("^\\+|^\\-|^\\*|^\\/", options: NSStringCompareOptions.RegularExpressionSearch){ let match0 = str[range0] println(match0) //yields "+" - as expexted str.removeRange(range0) println(match0) //yields "+" - as expected str.removeRange(range0) println(match0) //yields "+" - as expected } if let range1 = str.rangeOfString("^\\+|^\\-|^\\*|^\\/", options: NSStringCompareOptions.RegularExpressionSearch){ let match1 = str[range1] println(match1) //yields "+" as expected str.removeRange(range1) println(match1) //!@#$ OMG!!!!!!!!!!! a constant variable has changed! This prints "z" } The following are the options I can see: match1 has somehow obtained a reference to its source instead of being copied by value [Problem: Strings are value types in Swift] match1 has somehow obtained a closure to its source instead of just being a normal constant/variable? [Problem: sounds like science fiction & then why does match0 behave so well?] Could there be a bug in the Swift compiler? [Problem: Experience has taught me that this is very very very rarely the solution to your problem...but it is still in beta]

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• Search implementation dilemma: full text vs. plain SQL

  - by Ethan

  I have a MySQL/Rails app that needs search. Here's some info about the data: Users search within their own data only, so searches are narrowed down by user_id to begin with. Each user will have up to about five thousand records (they accumulate over time). I wrote out a typical user's records to a text file. The file size is 2.9 MB. Search has to cover two columns: title and body. title is a varchar(255) column. body is column type text. This will be lightly used. If I average a few searches per second that would be surprising. It's running an a 500 MB CentOS 5 VPS machine. I don't want relevance ranking or any kind of fuzziness. Searches should be for exact strings and reliably return all records containing the string. Simple date order -- newest to oldest. I'm using the InnoDB table type. I'm looking at plain SQL search (through the searchlogic gem) or full text search using Sphinx and the Thinking Sphinx gem. Sphinx is very fast and Thinking Sphinx is cool, but it adds complexity, a daemon to maintain, cron jobs to maintain the index. Can I get away with plain SQL search for a small scale app?

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• UnsupportedEncodingException thrown when using Resin and Grails

  - by knorv

  I've encountered a strange problem in a Grails webapp running under Grails: java.io.UnsupportedEncodingException is thrown quite frequently due to various unknown encoding strings (such as "ISO8859_10", "ISO-8859-10"), and the strange thing is that this is done entirely within the Resin and Grails code. That is - no custom code is involved when the exception is thrown. I'm not sure if it is Grails or the servlet container's code that should handle the exception. But I'd assume that the exception should be handled somewhere and not bubble up all the way to stderr. This is the exception in full: java.io.UnsupportedEncodingException: ISO-8859-10 at com.caucho.vfs.i18n.JDKWriter$OutputStreamEncodingWriter.<init>(JDKWriter.java:112) at com.caucho.vfs.i18n.JDKWriter.create(JDKWriter.java:79) at com.caucho.vfs.Encoding.getWriteEncoding(Encoding.java:231) at com.caucho.server.connection.ToByteResponseStream.setEncoding(ToByteResponseStream.java:137) at com.caucho.server.connection.AbstractHttpResponse.setLocale(AbstractHttpResponse.java:1683) at com.caucho.server.connection.HttpServletResponseImpl.setLocale(HttpServletResponseImpl.java: 115) at javax.servlet.ServletResponseWrapper.setLocale(ServletResponseWrapper.java:139) at javax.servlet.ServletResponseWrapper.setLocale(ServletResponseWrapper.java:139) at org.springframework.web.servlet.DispatcherServlet.render(DispatcherServlet.java:1035) at org.codehaus.groovy.grails.web.servlet.GrailsDispatcherServlet.doDispatch(GrailsDispatcherServlet.java:290) at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:716) at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:647) at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:552) at javax.servlet.http.HttpServlet.service(HttpServlet.java:114) My questions: Should the exception be handled? If so, is it the responsibility of the servlet container (Resin) or the web framework (Grails)? How would you go about solving this? (I'd rather not having the exception log cluttered with exceptions that I can do nothing about.)

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• Parsing back to 'messy' API strcuture

  - by Eric Fail

  I'm fetching data from an online database (REDcap) via API and the data gets delivered in as comma separated string like this, RAW.API <- structure("id,event_arm,name,dob,pushed_text,pushed_calc,complete\n\"01\",\"event_1_arm_1\",\"John\",\"1979-05-01\",\"\",\"\",2\n\"01\",\"event_2_arm_1\",\"John\",\"2012-09-02\",\"abc\",\"123\",1\n\"01\",\"event_3_arm_1\",\"John\",\"2012-09-10\",\"\",\"\",2\n\"02\",\"event_1_arm_1\",\"Mary\",\"1951-09-10\",\"def\",\"456\",2\n\"02\",\"event_2_arm_1\",\"Mary\",\"1978-09-12\",\"\",\"\",2\n", "`Content-Type`" = structure(c("text/html", "utf-8"), .Names = c("", "charset"))) I have this script that nicely parses it into a data frame, (df <- read.table(file = textConnection(RAW.API), header = TRUE, sep = ",", na.strings = "", stringsAsFactors = FALSE)) id event_arm name dob pushed_text pushed_calc complete 1 1 event_1_arm_1 John 1979-05-01 <NA> NA 2 2 1 event_2_arm_1 John 2012-09-02 abc 123 1 3 1 event_3_arm_1 John 2012-09-10 <NA> NA 2 4 2 event_1_arm_1 Mary 1951-09-10 def 456 2 5 2 event_2_arm_1 Mary 1978-09-12 <NA> NA 2 I then do some calculations and write them to pushed_text and pushed_calc whereafter I need to format the data back to the messy comma separated structure it came in. I imagine something like this, API.back <- `some magic command`(df, ...) identical(RAW.API, API.back) [1] TRUE Some command that can format my data from the data frame I made, df, back to the structure that the raw API-object came in, RAW.API. Any help would be very appreciated.

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• How to change default locale in BIRT

  - by zlajo

  Hi everybody, I am working with the BIRT reporting engine and my current task is to implement internationalization for reports. We are using the webviewer to generate and download pdf reports. There is a parameter (__locale) which allows me to specify the locale that should be used to generate a report. So far everything works fine. There is an additional requirement I have not been able to implement, though. Additionally to the locale which is set by the http parameter there should also be the possibility to specify some kind of fallback locale. Take the following example: There are two property-files common_en_US.properties and common_en_GB.properties. The first locale to be used should be en_GB (__locale=en_GB). Everything works fine if the common_en_GB.properties file exist. But I would also like to tell BIRT to use common_en_US.properties if the en_GB-file cannot be found, which does not work as expected. I tried to solve this by manually setting the Java default locale before executing BIRT because I thought that BIRT would use the Java mechanism to resolve localized strings. Unfortunately this attempt does not work. Is there a different way to do what I would like to do? Is it possible to do something like that at all? Thanks a lot! Johannes

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• Python halts while iteratively processing my 1GB csv file

  - by Dan

  I have two files: metadata.csv: contains an ID, followed by vendor name, a filename, etc hashes.csv: contains an ID, followed by a hash The ID is essentially a foreign key of sorts, relating file metadata to its hash. I wrote this script to quickly extract out all hashes associated with a particular vendor. It craps out before it finishes processing hashes.csv stored_ids = [] # this file is about 1 MB entries = csv.reader(open(options.entries, "rb")) for row in entries: # row[2] is the vendor if row[2] == options.vendor: # row[0] is the ID stored_ids.append(row[0]) # this file is 1 GB hashes = open(options.hashes, "rb") # I iteratively read the file here, # just in case the csv module doesn't do this. for line in hashes: # not sure if stored_ids contains strings or ints here... # this probably isn't the problem though if line.split(",")[0] in stored_ids: # if its one of the IDs we're looking for, print the file and hash to STDOUT print "%s,%s" % (line.split(",")[2], line.split(",")[4]) hashes.close() This script gets about 2000 entries through hashes.csv before it halts. What am I doing wrong? I thought I was processing it line by line. ps. the csv files are the popular HashKeeper format and the files I am parsing are the NSRL hash sets. http://www.nsrl.nist.gov/Downloads.htm#converter UPDATE: working solution below. Thanks everyone who commented! entries = csv.reader(open(options.entries, "rb")) stored_ids = dict((row[0],1) for row in entries if row[2] == options.vendor) hashes = csv.reader(open(options.hashes, "rb")) matches = dict((row[2], row[4]) for row in hashes if row[0] in stored_ids) for k, v in matches.iteritems(): print "%s,%s" % (k, v)

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• How to set UCS2 in numpy?

  - by mindcorrosive

  I'm trying to build numpy 1.2.1 as a module for a third-party python interpreter (custom-built, py2.4 linux x86_64) so that I can make calls to numpy from within it. Let's call this one interpreter A. The thing is, the system-wide python interpreter (also py2.4, let's call it B) from the vendor is built with --enable-unicode=ucs4, while the custom one is with UCS2. Needless to say, when I try to build a module with B, I get an error when I try to import numpy in A -- it complains about undefined symbol _PyUnicodeUCS4_IsWhiteSpace. I've searched around and apparently there's no way around this but to compile a custom Python interpreter -- which I did (let's call it interpreter C), properly specifying the unicode string length (verifiable through sys.maxunicode). I managed to build numpy with C as well, surprisingly enough, but still the problem persists when I try to import it in interpreter C. Previously, when I built numpy using B, there were no problems when importing it in B, but A would complain. Perhaps there's an option when building numpy to specify the length of Unicode strings to be used, as when configuring Python builds? Or am I doing something else wrong? A few notes: Upgrading to newer versions of python and/or numpy is not an option - interpreter A will stay on this version of the grammar for the foreseeable future. Also, it is not possible to start the interpreter A in standalone mode to build numpy with it, as it needs some other libraries preloaded I know that this whole thing is a mess, but I'd appreciate any help I can get to make this work. If you need more information, please let me know, I'd be happy to oblige. Thanks to everybody for their time in advance.

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• "multiply frog enemy" timer and array AS3

  - by VideoDnd

  How can I use the counter value to multiply the frogs in the array? My counter goes from 0-100. I want to prove that I can increment the enemies using a counter. EXPLAINED BETTER I have 10 frogs in an array. I want to use a timer to add 10 more frogs on each iteration of the TimerEvent.TIMER firing. //currentCount var timer:Timer = new Timer(1000, 50); timer.addEventListener(TimerEvent.TIMER, countdown); timer.start(); function countdown(event:TimerEvent) { // myText.text = String(0 + timer.currentCount); } //Creates 10 enemies "I want enemies to multiply 0-100" var enemyArray:Array = new Array(); for (var i:int = 0; i < 10; i++) { var noname:FrogClass = new FrogClass(); noname.x = i*10; //this will just assign some different x and y value depending on i. noname.y = i*11; enemyArray.push(noname); //put the enemy into the array addChild(noname); //puts it on the stage } SYMBOL PROPERTIES NAME "noname" CLASS "FrogClass" WHY I need specific examples using strings and arrays, because I'm stuck in a learning curve. Stupid examples are more fun!

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• Optimizing drawing on UITableViewCell

  - by Brian

  I am drawing content to a UITableViewCell and it is working well, but I'm trying to understand if there is a better way of doing this. Each cell has the following components: Thumbnail on the left side - could come from server so it is loaded async Title String - variable length so each cell could be different height Timestamp String Gradient background - the gradient goes from the top of the cell to the bottom and is semi-transparent so that background colors shine through with a gloss It currently works well. The drawing occurs as follows: UITableViewController inits/reuses a cell, sets needed data, and calls [cell setNeedsDisplay] The cell has a CALayer for the thumbnail - thumbnailLayer In the cell's drawRect it draws the gradient background and the two strings The cell's drawRect it then calls setIcon - which gets the thumbnail and sets the image as the contents of the thumbnailLayer. If the image is not found locally, it sets a loading image as the contents of the thumbnailLayer and asynchronously gets the thumbnail. Once the thumbnail is received, it is reset by calling setIcon again & resets the thumbnailLayer.contents This all currently works, but using Instruments I see that the thumbnail is compositing with the gradient. I have tried the following to fix this: setting the cell's backgroundView to a view whose drawRect would draw the gradient so that the cell's drawRect could draw the thumbnail and using setNeedsDisplayInRect would allow me to only redraw the thumbnail after it loaded --- but this resulted in the backgroundView's drawing (gradient) covering the cell's drawing (text). I would just draw the thumbnail in the cell's drawRect, but when setNeedsDisplay is called, drawRect will just overlap another image and the loading image may show through. I would clear the rect, but then I would have to redraw the gradient. I would try to draw the gradient in a CAGradientLayer and store a reference to it, so I can quickly redraw it, but I figured I'd have to redraw the gradient if the cell's height changes. Any ideas? I'm sure I'm missing something so any help would be great.

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• Thread-safe initialization of function-local static const objects

  - by sbi

  This question made me question a practice I had been following for years. For thread-safe initialization of function-local static const objects I protect the actual construction of the object, but not the initialization of the function-local reference referring to it. Something like this: namspace { const some_type& create_const_thingy() { lock my_lock(some_mutex); static const some_type the_const_thingy; return the_const_thingy; } } void use_const_thingy() { static const some_type& the_const_thingy = create_const_thingy(); // use the_const_thingy } The idea is that locking takes time, and if the reference is overwritten by several threads, it won't matter. I'd be interested if this is safe enough in practice? safe according to The Rules? (I know, the current standard doesn't even know what "concurrency" is, but what about trampling over an already initialized reference? And do other standards, like POSIX, have something to say that's relevant to this?) For the inquiring minds: Many such function-local static const objects I used are maps which are initialized from const arrays upon first use and used for lookup. For example, I have a few XML parsers where tag name strings are mapped to enum values, so I could later switch over the tags enum values.

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• Creating dynamic jQuery tooltips for dynamic content

  - by Mel

  I'm using the qTip jQuery plugin to create tooltips for a set of links. Two problems: How do I create a set of tooltips for three dynamically generated links where the content of the tooltip will also be dynamic: a href="books.cfm?bookID=11"Book One a href="books.cfm?bookID=22"Book Two a href="books.cfm?bookID=33"Book Three I would like to create a tooltip for each link. Each tooltip will then load details about each book. Thus I must pass the bookID to the tooltip: $('#catalog a[href]').each(function() { $(this).qtip( { content: { URL: 'cfcs/viewbooks.cfc?method=bookDetails', data: { bookID: <cfoutput>#indexView.bookID#</cfoutput> }, method: 'get' } }); }); Unfortunately the above code is not working correctly. I've gotten it to work when I've used a static 'bookID' instead of a dynamically generated number. Even when it does work (by using a static number for 'bookID', I can't format the data correctly. It comes back as a query result, or a bunch of text strings. Should I send back the results as HTML? Unsure. PS: I am an absolute NOVICE to Javascript and jQuery, so please try not to be as technical. Many thanks!

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