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  • improve my python program to fetch the desire rows by using if condition

    - by user2560507
    unique.txt file contains: 2 columns with columns separated by tab. total.txt file contains: 3 columns each column separated by tab. I take each row from unique.txt file and find that in total.txt file. If present then extract entire row from total.txt and save it in new output file. ###Total.txt column a column b column c interaction1 mitochondria_205000_225000 mitochondria_195000_215000 interaction2 mitochondria_345000_365000 mitochondria_335000_355000 interaction3 mitochondria_345000_365000 mitochondria_5000_25000 interaction4 chloroplast_115000_128207 chloroplast_35000_55000 interaction5 chloroplast_115000_128207 chloroplast_15000_35000 interaction15 2_10515000_10535000 2_10505000_10525000 ###Unique.txt column a column b mitochondria_205000_225000 mitochondria_195000_215000 mitochondria_345000_365000 mitochondria_335000_355000 mitochondria_345000_365000 mitochondria_5000_25000 chloroplast_115000_128207 chloroplast_35000_55000 chloroplast_115000_128207 chloroplast_15000_35000 mitochondria_185000_205000 mitochondria_25000_45000 2_16595000_16615000 2_16585000_16605000 4_2785000_2805000 4_2775000_2795000 4_11395000_11415000 4_11385000_11405000 4_2875000_2895000 4_2865000_2885000 4_13745000_13765000 4_13735000_13755000 My program: file=open('total.txt') file2 = open('unique.txt') all_content=file.readlines() all_content2=file2.readlines() store_id_lines = [] ff = open('match.dat', 'w') for i in range(len(all_content)): line=all_content[i].split('\t') seq=line[1]+'\t'+line[2] for j in range(len(all_content2)): if all_content2[j]==seq: ff.write(seq) break Problem: but istide of giving desire output (values of those 1st column that fulfile the if condition). i nead somthing like if jth of unique.txt == ith of total.txt then write ith row of total.txt into new file.

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  • tkinter python entry not being displayed

    - by user1050619
    I have created a Form with labels and entries..but for some reason the entries are not being created, peoplegui.py from tkinter import * from tkinter.messagebox import showerror import shelve shelvename = 'class-shelve' fieldnames = ('name','age','job','pay') def makewidgets(): global entries window = Tk() window.title('People Shelve') form = Frame(window) form.pack() entries = {} for (ix, label) in enumerate(('key',) + fieldnames): lab = Label(form, text=label) ent = Entry(form) lab.grid(row=ix, column=0) lab.grid(row=ix, column=1) entries[label] = ent Button(window, text="Fetch", command=fetchRecord).pack(side=LEFT) Button(window, text="Update", command=updateRecord).pack(side=LEFT) Button(window, text="Quit", command=window.quit).pack(side=RIGHT) return window def fetchRecord(): print('In fetch') def updateRecord(): print('In update') if __name__ == '__main__': window = makewidgets() window.mainloop() When I run it the labels are created but not the entries.

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  • python multiprocessing member variable not set

    - by Jake
    In the following script, I get the "stop message received" output but the process never ends. Why is that? Is there another way to end a process besides terminate or os.kill that is along these lines? from multiprocessing import Process from time import sleep class Test(Process): def __init__(self): Process.__init__(self) self.stop = False def run(self): while self.stop == False: print "running" sleep(1.0) def end(self): print "stop message received" self.stop = True if __name__ == "__main__": test = Test() test.start() sleep(1.0) test.end() test.join()

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  • os.walk in python not running with cmd line parameter passed as path

    - by kartiku
    Hello, I needed to find the number of files in a folder on the system. This is what i used: file_count = sum((len(f) for _, _, f in os.walk('path'))) This works fine when we specify the path as a string in quotes, but when I enter a variable name that holds the path, type(file_count) is a generator object, and hence cannot be used as an integer. How to solve this and why does this happen?

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  • Python - Finding unicode/ascii problems

    - by user330739
    Hi all, I am csv.reader to pull in info from a very long sheet. I am doing work on that data set and then I am using the xlwt package to give me a workable excel file. However, I get this error: UnicodeDecodeError: 'ascii' codec can't decode byte 0x92 in position 34: ordinal not in range(128) My question to you all is, how can I find exactly where that error is in my data set? Also, is there some code that I can write which will look through my data set and find out where the issues lie (because some data sets run without the above error and others have problems)?

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  • Python implementation of avro slow?

    - by lazy1
    I'm reading some data from avro file using the avro library. It takes about a minute to load 33K objects from the file. This seem very slow to me, specially with the Java version reading the same file in about 1sec. Here is the code, am I doing something wrong? import avro.datafile import avro.io from time import time def load(filename): fo = open(filename, "rb") reader = avro.datafile.DataFileReader(fo, avro.io.DatumReader()) for i, record in enumerate(reader): pass return i + 1 def main(argv=None): import sys from argparse import ArgumentParser argv = argv or sys.argv parser = ArgumentParser(description="Read avro file") start = time() num_records = load("events.avro") end = time() print("{0} records in {1} seconds".format(num_records, end - start)) if __name__ == "__main__": main()

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  • Need help parsing HTML with a regex in python

    - by laspal
    Hi, My string is mystring = "<tr><td><span class='para'><b>Total Amount : </b>INR (Indian Rupees) 100.00</span></td></tr>" My problem here is I have to search and get the total amount test = re.search("(Indian Rupees)(\d{2})(?:\D|$)", mystring) but my test give me None. How can I get the values and values can be 10.00, 100.00, 1000.00 Thanks

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  • How to break the following line of python

    - by FrederikNS
    Hello Stack Overflow, I have come upon a couple of lines of code similar to this one, but I'm unsure how I should break it: blueprint = Blueprint(self.blueprint_map[str(self.ui.blueprint_combo.currentText())], runs=self.ui.runs_spin.text(), me=self.ui.me_spin.text(), pe=self.ui.pe_skill_combo.currentIndex()) Thanks in advance

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  • How to optimize this Python code?

    - by RandomVector
    def maxVote(nLabels): count = {} maxList = [] maxCount = 0 for nLabel in nLabels: if nLabel in count: count[nLabel] += 1 else: count[nLabel] = 1 #Check if the count is max if count[nLabel] > maxCount: maxCount = count[nLabel] maxList = [nLabel,] elif count[nLabel]==maxCount: maxList.append(nLabel) return random.choice(maxList) nLabels contains a list of integers. The above function returns the integer with highest frequency, if more than one have same frequency then a randomly selected integer from them is returned. E.g. maxVote([1,3,4,5,5,5,3,12,11]) is 5

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  • Python - from file to data structure?

    - by Seafoid
    Hi, I have large file comprising ~100,000 lines. Each line corresponds to a cluster and each entry within each line is a reference i.d. for another file (protein structure in this case), e.g. 1hgn 1dju 3nmj 8kfn 9opu 7gfb 4bui I need to read in the file as a list of lists where each line is a sublist, thus preserving the integrity of the cluster, e.g. nested_list = [['1hgn', '1dju', '3nmj', '8kfn'], ['9opu', '7gfb'], ['4bui']] My current code creates a nested list but the entries within each list are a single string and not comma separated. Therefore, I cannot splice the list with indices so easily. Any help greatly appreciated. Thanks, S :-)

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  • Python for statement giving an Invalid Syntax error with list

    - by Cold Diamondz
    I have some code in which is throwing an error (I'm using repl.it) import random students = ['s1:0','s2:0','s3:0'] while True: print'\n'*50 print'Ticket Machine'.center(80) print'-'*80 print'1. Clear Student Ticket Values'.center(80) print'2. Draw Tickets'.center(80) menu = raw_input('-'*80+'\nChoose an Option: ') if menu == '1': print'\n'*50 print'CLEARED!' students = ['s1:0','s2:0','s3:0'] raw_input('Press enter to return to the main menu!') elif menu == '2': tickets = [] print'\n'*50 times = int(raw_input('How many tickets to draw? ') for a in students: for i in range(a.split(':')[1]): tickets.append(a.split(':')[0]) for b in range(1,times+1): print str(b) + '. ' + random.choice(tickets) else: print'\n'*50 print'That was not an option!' raw_input('Press enter to return to the main menu!') But it is throwing this error: File "<stdin>", line 19 for a in students: ^ SyntaxError: invalid syntax I am planning on using this in a class, but I can't use it until the bug is fixed, also, student names have been removed for privacy reasons.

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  • How to replace only part of the match with python re.sub

    - by Arty
    I need to match two cases by one reg expression and do replacement 'long.file.name.jpg' - 'long.file.name_suff.jpg' 'long.file.name_a.jpg' - 'long.file.name_suff.jpg' I'm trying to do the following re.sub('(\_a)?\.[^\.]*$' , '_suff.',"long.file.name.jpg") But this is cut the extension '.jpg' and I'm getting long.file.name_suff. instead of long.file.name_suff.jpg I understand that this is because of [^.]*$ part, but I can't exclude it, because I have to find last occurance of '_a' to replace or last '.' Is there a way to replace only part of the match?

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  • Dealing with regular expressions, Python

    - by Gusto
    I want to remove some symbols from a string using a regular expression, for example: == (that occur both at the beginning and at the end of a line), * (at the beginning of a line ONLY). def some_func(): clean = re.sub(r'= {2,}', '', clean) #Removes 2 or more occurrences of = at the beg and at the end of a line. clean = re.sub(r'^\* {1,}', '', clean) #Removes 1 or more occurrences of * at the beginning of a line. What's wrong with my code? It seems like expressions are wrong. How do I remove a character/symbol if it's at the beginning or at the end of the line (with one or more occurrences)?

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  • Python method to remove iterability

    - by Debilski
    Suppose I have a function which can either take an iterable/iterator or a non-iterable as an argument. Iterability is checked with try: iter(arg). Depending whether the input is an iterable or not, the outcome of the method will be different. Not when I want to pass a non-iterable as iterable input, it is easy to do: I’ll just wrap it with a tuple. What do I do when I want to pass an iterable (a string for example) but want the function to take it as if it’s non-iterable? E.g. make that iter(str) fails.

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  • encapsulation in python list (want to use " instead of ')

    - by Codehai
    I have a list of users users["pirates"] and they're stored in the format ['pirate1','pirate2']. If I hand the list over to a def and query for it in MongoDB, it returns data based on the first index (e.g. pirate1) only. If I hand over a list in the format ["pirate1","pirate"], it returns data based on all the elements in the list. So I think there's something wrong with the encapsulation of the elements in the list. My question: can I change the encapsulation from ' to " without replacing every ' on every element with a loop manually? Short Example: aList = list() # get pirate Stuff # users["pirates"] is a list returned by a former query # so e.g. users["pirates"][0] may be peter without any quotes for pirate in users["pirates"]: aList.append(pirate) aVar = pirateDef(aList) print(aVar) the definition: def pirateDef(inputList = list()): # prepare query col = mongoConnect().MYCOL # query for pirates Arrrr pirates = col.find({ "_id" : {"$in" : inputList}} ).sort("_id",1).limit(50) # loop over users userList = list() for person in pirates: # do stuff that has nothing to do with the problem # append user to userlist userList.append(person) return userList If the given list has ' encapsulation it returns: 'pirates': [{'pirate': 'Arrr', '_id': 'blabla'}] If capsulated with " it returns: 'pirates' : [{'_id': 'blabla', 'pirate' : 'Arrr'}, {'_id': 'blabla2', 'pirate' : 'cheers'}] EDIT: I tried figuring out, that the problem has to be in the MongoDB query. The list is handed over to the Def correctly, but after querying pirates only consists of 1 element... Thanks for helping me Codehai

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  • Using Memcached in Python/Django - questions.

    - by Thomas
    I am starting use Memcached to make my website faster. For constant data in my database I use this: from django.core.cache import cache cache_key = 'regions' regions = cache.get(cache_key) if result is None: """Not Found in Cache""" regions = Regions.objects.all() cache.set(cache_key, regions, 2592000) #(2592000sekund = 30 dni) return regions For seldom changed data I use signals: from django.core.cache import cache from django.db.models import signals def nuke_social_network_cache(self, instance, **kwargs): cache_key = 'networks_for_%s' % (self.instance.user_id,) cache.delete(cache_key) signals.post_save.connect(nuke_social_network_cache, sender=SocialNetworkProfile) signals.post_delete.connect(nuke_social_network_cache, sender=SocialNetworkProfile) Is it correct way? I installed django-memcached-0.1.2, which show me: Memcached Server Stats Server Keys Hits Gets Hit_Rate Traffic_In Traffic_Out Usage Uptime 127.0.0.1 15 220 276 79% 83.1 KB 364.1 KB 18.4 KB 22:21:25 Can sombody explain what columns means? And last question. I have templates where I am getting much records from a few table (relationships). So in my view I get records from one table and in templates show it and related info from others. Generating page last a few seconds for very small table (<100records). Is it some easy way to cache queries from templates? Have I to do some big structure in my view (with all related tables), cache it and send to template?

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  • Plotting a cumulative graph of python datetimes

    - by ventolin
    Say I have a list of datetimes, and we know each datetime to be the recorded time of an event happening. Is it possible in matplotlib to graph the frequency of this event occuring over time, showing this data in a cumulative graph (so that each point is greater or equal to all of the points that went before it), without preprocessing this list? (e.g. passing datetime objects directly to some wonderful matplotlib function) Or do I need to turn this list of datetimes into a list of dictionary items, such as: {"year": 1998, "month": 12, "date": 15, "events": 92} and then generate a graph from this list? Sorry if this seems like a silly question - I'm not all too familiar with matplotlib, and would like to save myself the effort of doing this the latter way if matplotlib can already deal with datetime objects itself.

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