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  • Parsing line with delimiter in Python

    - by neversaint
    I have lines of data which I want to parse. The data looks like this: a score=216 expect=1.05e-06 a score=180 expect=0.0394 What I want to do is to have a subroutine that parse them and return 2 values (score and expect) for each line. However this function of mine doesn't seem to work: def scoreEvalFromMaf(mafLines): for word in mafLines[0]: if word.startswith("score="): theScore = word.split('=')[1] theEval = word.split('=')[2] return [theScore, theEval] raise Exception("encountered an alignment without a score") Please advice what's the right way to do it?

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  • fetching from a specified index in a set using python

    - by tipu
    I'm using pagination on a values from a set. So what this results in is me needing to get values from x to x + 20 which can be in the middle of a set with 50,000 entries. Is it possible that I can fetch these values by grabbing by the space in the set? Would it make more sense to do result = [] my_dict = dict(very_big_set) for i in range(30000, 30020) result.append(my_dict[i])

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  • Python breaks for a certain amount

    - by Brian Cox
    All, I am not very good at explaining so i will let my comments do it! #this script is to calculate some of the times table up to 24X24 and also miss some out #Range of numbers to be calculated numbers=range(1,25) for i in numbers: for w in numbers: print(str(i)+"X"+str(w)+"="+str(i*w)) #here i want to break randomly (skip some out) e.g. i could be doing the 12X1,12X2 and then 12X5 i have no limit of skips. Update Sorry if this is not clear i want it to break from the inner loop for a random amount of times

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  • Python what's the data structure for triple data

    - by Paul
    I've got a set of data that has three attributes, say A, B, and C, where A is kind of the index (i.e., A is used to look up the other two attributes.) What would be the best data structure for such data? I used two dictionaries, with A as the index of each. However, there's key errors when the query to the data doesn't match any instance of A.

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  • Does my function right on python?

    - by Ali Ismayilov
    Write a function which takes a string argument, and creates and returns an Employee object containing details of the employee specified by the string. The string should be assumed to have the format 12345 25000 Consultant Bart Simpson The first three items in the line will be the payroll number, salary and job title and the rest of the line will be the name. There will be no spaces in the job title but there may be one or more spaces in the name. My function: def __str__(self): return format(self.payroll, "d") + format(self.salary, "d") + ' ' \ + self.jobtitle + self.name

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  • Python: replace urls with title names from a string

    - by Hellnar
    Hello I would like to remove urls from a string replace them with their titles of the original contents. For example: mystring = "Ah I like this site: http://www.stackoverflow.com. Also I must say I like http://www.digg.com" sanitize(mystring) # it becomes "Ah I like this site: Stack Overflow. Also I must say I like Digg - The Latest News Headlines, Videos and Images" For replacing url to the title, I have written this snipplet: #get_title: string -> string def get_title(url): """Returns the title of the input URL""" output = BeautifulSoup.BeautifulSoup(urllib.urlopen(url)) return output.title.string

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  • Python: Pickling highly-recursive objects without using `setrecursionlimit`

    - by cool-RR
    I've been getting RuntimeError: maximum recursion depth exceeded when trying to pickle a highly-recursive tree object. Much like this asker here. He solved his problem by setting the recursion limit higher with sys.setrecursionlimit. But I don't want to do that: I think that's more of a workaround than a solution. Because I want to be able to pickle my trees even if they have 10,000 nodes in them. (It currently fails at around 200.) (Also, every platform's true recursion limit is different, and I would really like to avoid opening this can of worms.) Is there any way to solve this at the fundamental level? If only the pickle module would pickle using a loop instead of recursion, I wouldn't have had this problem. Maybe someone has an idea how I can cause something like this to happen, without rewriting the pickle module? Any other idea how I can solve this problem will be appreciated.

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  • Invoking a superclass's class methods in Python

    - by LeafStorm
    I am working on a Flask extension that adds CouchDB support to Flask. To make it easier, I have subclassed couchdb.mapping.Document so the store and load methods can use the current thread-local database. Right now, my code looks like this: class Document(mapping.Document): # rest of the methods omitted for brevity @classmethod def load(cls, id, db=None): return mapping.Document.load(cls, db or g.couch, id) I left out some for brevity, but that's the important part. However, due to the way classmethod works, when I try to call this method, I receive the error message File "flaskext/couchdb.py", line 187, in load return mapping.Document.load(cls, db or g.couch, id) TypeError: load() takes exactly 3 arguments (4 given) I tested replacing the call with mapping.Document.load.im_func(cls, db or g.couch, id), and it works, but I'm not particularly happy about accessing the internal im_ attributes (even though they are documented). Does anyone have a more elegant way to handle this?

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  • python unit testing os.remove fails file system

    - by hwjp
    Am doing a bit of unit testing on a function which attempts to open a new file, but should fail if the file already exists. when the function runs sucessfully, the new file is created, so i want to delete it after every test run, but it doesn't seem to be working: class MyObject_Initialisation(unittest.TestCase): def setUp(self): if os.path.exists(TEMPORARY_FILE_NAME): try: os.remove(TEMPORARY_FILE_NAME) except WindowsError: #TODO: can't figure out how to fix this... #time.sleep(3) #self.setUp() #this just loops forever pass def tearDown(self): self.setUp() any thoughts? The Windows Error thrown seems to suggest the file is in use... could it be that the tests are run in parallel threads? I've read elsewhere that it's 'bad practice' to use the filesystem in unit testing, but really? Surely there's a way around this that doesn't invole dummying the filesystem?

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  • Python timezone issue?

    - by Timmy
    im having troubles with parsing a feed and getting the time. i am using dateutil.parser from dateutil.parser import parse print updated, parse(updated ), parse( updated ).utcoffset() this should be a time in cali, output 2010-05-20T11:00:00.000-07:00 2010-05-20 11:00:00.000000-07:00 -1 day, 17:00:00 why is the offset -1 day 17 hours? this is causing me issues when i try to do things with it

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  • in python how to remove this \n from string or list

    - by pritesh modi
    this is my main string "action","employee_id","name" "absent","pritesh",2010/09/15 00:00:00 so after name coolumn its goes to new line but here i append to list a new line character is added and make it like this way data_list*** ['"action","employee_id","name"\n"absent","pritesh",2010/09/15 00:00:00\n'] here its append the new line character with absent but actually its a new line strarting but its appended i want to make it like data_list*** ['"action","employee_id","name","absent","pritesh",2010/09/15 00:00:00']

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  • Python Logic in searching String

    - by Mahmoud A. Raouf
    filtered=[] text="any.pdf" if "doc" and "pdf" and "xls" and "jpg" not in text: filtered.append(text) print(filtered) This is my first Post in Stack Overflow, so excuse if there's something annoying in Question, The Code suppose to append text if text doesn't include any of these words:doc,pdf,xls,jpg. It works fine if Its like: if "doc" in text: elif "jpg" in text: elif "pdf" in text: elif "xls" in text: else: filtered.append(text)

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  • Surface Area of a Spheroid in Python

    - by user3678321
    I'm trying to write a function that calculates the surface area of a prolate or oblate spheroid. Here's a link to where I got the formulas (http://en.wikipedia.org/wiki/Prolate_spheroid & http://en.wikipedia.org/wiki/Oblate_spheroid). I think I've written them wrong, but here is my code so far; from math import pi, sqrt, asin, degrees, tanh def checkio(height, width): height = float(height) width = float(width) lst = [] if height == width: r = 0.5 * width surface_area = 4 * pi * r**2 surface_area = round(surface_area, 2) lst.append(surface_area) elif height > width: #If spheroid is prolate a = 0.5 * width b = 0.5 * height e = 1 - a / b surface_area = 2 * pi * a**2 * (1 + b / a * e * degrees(asin**-1(e))) surface_area = round(surface_area, 2) lst.append(surface_area) elif height < width: #If spheroid is oblate a = 0.5 * height b = 0.5 * width e = 1 - b / a surface_area = 2 * pi * a**2 * (1 + 1 - e**2 / e * tanh**-1(e)) surface_area = round(surface_area, 2) lst.append(surface_area, 2) return lst

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  • Python Tkinter after loop not working fast enough

    - by user2658538
    I am making a simple metronome where it plays a tick sound every few milliseconds depending on the bpm and plays the sound using the winsound module. I use tkinter because there will be a gui component later but for now the metronome code is working, it plays the sound at a constant rate, but even though I set the after loop to play the sound every few milliseconds, it waits longer and the beat is slower than it should be. Is it a problem with the code or a problem with the way I calculate the time? Thanks. Here is my code. from Tkinter import * import winsound,time,threading root=Tk() c=Canvas(root) c.pack() class metronome(): def __init__(self,root,canvas,tempo=100): self.root=root self.root.bind("<1>",self.stop) self.c=canvas self.thread=threading.Thread(target=self.play) self.thread.daemon=True self.pause=False self.tempo=tempo/60.0 self.tempo=1.0/self.tempo self.tempo*=1000 def play(self): winsound.PlaySound("tick.wav",winsound.SND_FILENAME) self.sound=self.c.after(int(self.tempo),self.play) def stop(self,e): self.c.after_cancel(self.sound) beat=metronome(root,c,120) beat.thread.start() root.mainloop()

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  • Python: Comparing specific columns in two csv files

    - by coder999
    Say that I have two CSV files (file1 and file2) with contents as shown below: file1: fred,43,Male,"23,45",blue,"1, bedrock avenue" file2: fred,39,Male,"23,45",blue,"1, bedrock avenue" I would like to compare these two CSV records to see if columns 0,2,3,4, and 5 are the same. I don't care about column 1. What's the most pythonic way of doing this? EDIT: Some example code would be appreciated.

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  • mathing string in python

    - by nani
    Write two functions, called countSubStringMatch and countSubStringMatchRecursive that take two arguments, a key string and a target string. These functions iteratively and recursively count the number of instances of the key in the target string. You should complete definitions forthe remaining problems, we are going to explore other substring matching ideas. These problems can be solved with either an iterative function or a recursive one. You are welcome to use either approach, though you may find iterative approaches more intuitive in these cases of matching linear structures

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  • Python. Draw rectangle in basemap

    - by user2928318
    I need to add several rectangles in my basemap. I nee four rectangles with lat and log ranges as below. 1) llcrnrlon=-10, urcrnrlon=10, llcrnrlat=35,urcrnrlat=60 2) llcrnrlon=10.5, urcrnrlon=35, llcrnrlat=35,urcrnrlat=60 3) llcrnrlon=35.5, urcrnrlon=52, llcrnrlat=30,urcrnrlat=55 4) llcrnrlon=-20, urcrnrlon=35, llcrnrlat=20,urcrnrlat=34.5 My script is below. I found "polygon" packages to add lines but I do not exactly know how to do. Please help me!! Thanks a lot for your help in advance! from mpl_toolkits.basemap import Basemap m=basemaputpart.Basemap(llcrnrlon=-60, llcrnrlat=20, urcrnrlon=60, urcrnrlat=70, resolution='i', projection='cyl', lon_0=0, lat_0=45) lon1=np.array([[-180.+j*0.5 for j in range(721)] for i in range(181)]) lat1=np.array([[i*0.5 for j in range(721)] for i in range(181) ]) Nx1,Ny1=m(lon1,lat1,inverse=False) toplot=data[:,:] toplot[data==0]=np.nan toplot=np.ma.masked_invalid(toplot) plt.pcolor(Nx1,Ny1,np.log(toplot),vmin=0, vmax=5) cbar=plt.colorbar() m.drawcoastlines(zorder=2) m.drawcountries(zorder=2) plt.show()

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  • EOF error using recv in python

    - by tipu
    I am doing this in my code, HOST = '192.168.1.3' PORT = 50007 s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) s.connect((HOST, PORT)) query_details = {"page" : page, "query" : query, "type" : type} s.send(str(query_details)) #data = eval(pickle.loads(s.recv(4096))) data = s.recv(16384) But I am continually getting EOF at the last line. The code I am sending with, self.request.send(pickle.dumps(results))

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  • How to parse a directory tree in python?

    - by chutsu
    I have a directory called "notes" within the notes I have categories which are named "science", "maths" ... within those folder are sub-categories, such as "Quantum Mechanics", "Linear Algebra". ./notes --> ./notes/maths ------> ./notes/maths/linear_algebra --> ./notes/physics/ ------> ./notes/physics/quantum_mechanics My problem is that I don't know how to put the categories and subcategories into TWO SEPARATE list/array.

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