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  • AWK :Extract columns from file: Rows have variable columns

    - by pulikot1
    I have a text file in the following format. Each row has variable number of columns. File: gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein gi|57651109|ref|YP_184912.1| chromosomal replication initiation protein % 1 0.0 2296 100.0 gi|269201692|ref|YP_003280961.1| DNA polymerase III subunit beta gi|57651110|ref|YP_184913.1| DNA polymerase III subunit beta % 1 0.0 1964 100.0 The resulting file should look like the following: gi|269201691|ref|YP_003280960.1| gi|57651109|ref|YP_184912.1| % 1 0.0 2296 100.0 gi|269201694|ref|YP_003280963.1| gi|57651112|ref|YP_184915.1| % 1 0.0 1767 100.0 The code below helps find columns in each row with the pattern 'ref'. awk '{for (i=1;i<=NF;i++) if ($i ~ /ref/) print $i }' Any ideas on how to do the same?

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  • Silverlight 4 accessing WCF Data Services: BeginInvoke frustrations.

    - by Gatmando
    Hi, I'm attempting to follow a pattern for performing WCF data service queries using the Silverlight 4 beta. The following is my code: public CodeTables() { CodeCountries = new ObservableCollection<dsRealHomes.CodeCountries>(); dsRealHomes.RealHomesEntities myClient = null; myClient = staticGlobals.RealHomesContext(); object userState = null; myClient.BeginExecute<dsRealHomes.CodeCountries>(new Uri("CodeCountries"), (IAsyncResult asyncResult) => { Dispatcher.BeginInvoke( () => { var test = myClient.EndExecute<dsRealHomes.CodeCountries>asyncResult).ToList(); } ); }, userState); } This is derived from a number of examples I've come across for WCF data services with silverlight. Unfortunately no matter how I try to implement the code i end up with the following error on 'Dispatcher.BeginInvoke': 'An object reference is required for the non-static field, method, or property (System.Windows.Threading.Dispatcher.BeginInvoke(System.Action)' Thanks

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  • Selective PHP autoload

    - by Extrakun
    I am writing a add-on module which is integrated with an existing PHP application; Because I am using a MVC pattern, and which may requires lot of inclusion of classes (which might not be used at all depending on the action of the user), I decide to use autoloading of classes. However, I have to ensure that the autoload function does not interferes with the normal operations of the existing applications. Does autoload only kicks in if a class name is not defined? Say I have to write another module which uses its own autoload functions (say, I have an autoload for a module, since they each reside in their own folder), how do I differentiate which module is it for? For #2, I thought of 2 options. Either prefix the class name with the module name (Such as 'MyNewModule_View_Default' and 'AnotherModule_View_Default'), or use file_exists to check the include file exists. Other suggestions are welcomed too!

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  • How to handle BL cache for multiple web applications?

    - by Eran Betzalel
    I recently received a project that contains multiple web applications with no MVC structure. For starters I've created a library (DLL) that will contain the main Business Logic. The problem is with Caching - If I use the current web context cache object than I might end up with duplicate caching (as the web context will be different for every application). I'm currently thinking about implementing a simple caching mechanism with a singleton pattern that will allow the different web sites (aka different application domains) to share their "caching wisdom". I'd like to know what is the best way to solve this problem.

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  • The right way to manage subviews in a UIControl

    - by ed94133
    (iPhone SDK 3.x:) I have a UIControl subclass that creates a different number of subviews depending on the length of an NSArray property. Please take my word for it that this needs to be a UIControl rather than a UIView. Currently I implement subview management in drawRect, beginning by removing all subviews and then creating the appropriate number based on the property. I don't think this is very good memory management and I'm not sure if drawRect is really the appropriate place to add subviews. Any thoughts on the best way to handle this pattern? Thank you.

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  • Parsing an RFC822-Datetime in .NETMF 4.0

    - by chris12892
    I have an application written in .NETMF that requires that I be able to parse an RFC822-Datetime. Normally, this would be easy, but NETMF does not have a DateTime.parse() method, nor does it have some sort of a pattern matching implementation, so I'm pretty much stuck. Any ideas? EDIT: "Intelligent" solutions are probably needed. Part of the reason this is difficult is that the datetime in question has a tendency to have extra spaces in it (but only sometimes). A simple substring solution might work one day, but fail the next when the datetime has an extra space somewhere between the parts. I do not have control over the datetime, it is from the NOAA.

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  • Infopath - changing sql servers

    - by ScottStonehouse
    I have an InfoPath form which has sort of a master-detail pattern, with two tables in the underlying main datasource. I am trying to migrate this to a new SQL Server - same database, just moved from a SQL2005 machine to a SQL2008 machine. If I change the servername, it also wants me to change the database and tables. If I select the same database and master table, the bindings are maintains for the master table. But there doesn't appear to be a way to select multiple tables when you change the datasource, so you lose the detail bindings. Am I missing something - I'm pretty new to InfoPath.

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  • what perl regex should I use to get value from line

    - by Octopus
    I am trying to capture the cpu usage from the running process. For SunOS, I have below output process,10050,user1,218,59,0,1271M,1260M,sleep,58.9H,0.02%,java here the cpu % is at 11th field if we separate by comma(,). To get this value I am using below regex regex => q/^process,(?:.*?),((?:\d+)\.(?:\d+))%,java$/, but for the linux system I have below output. process,26190,user1,20,0,1236m,43m,6436,S,0.0,1.1,0:00.00,java, here the cpu usage is at 10th column What regex pattern should i use to get this value. Appreciate for any suggestion.

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  • !(ReferenceEquals()) vs != in Entity Framework 4

    - by Eric J.
    Unless a class specifically overrides the behavior defined for Object, ReferenceEquals and == do the same thing... compare references. In property setters, I have commonly used the pattern private MyType myProperty; public MyType MyProperty { set { if (myProperty != value) { myProperty = value; // Do stuff like NotifyPropertyChanged } } } However, in code generated by Entity Framework, the if statement is replaced by if (!ReferenceEquals(myProperty, value)) Using ReferenceEquals is more explicit (as I guess not all C# programmers know that == does the same thing if not overridden). Is there any difference that's escaping me between the two if-variants? Are they perhaps accounting for the possibility that POCO designers may have overridden ==? In short, if I have not overridden ==, am I save using != instead of ReferencEquals()?

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  • Zend RegEx Validator error message issue

    - by Mallika Iyer
    Hello, I'm validating a text field in my form as follows: $name = new Zend_Form_Element_Text('name'); $name->setLabel('First Name:') ->setRequired(true) ->addFilter(new Zend_Filter_StringTrim()) ->addValidator('regex',true,array('/^[(a-zA-Z0-9)]+$/')) ->addErrorMessage('Please enter a valid first name'); What I'm trying to accomplish is - how can i display a meaningful error message? Eg: If first name is 'XYZ-', how can i display '- is not allowed in first name.' Is there a way I can access what character the regex is failing for? Would you recommend something else altogether? I thought about writing a custom validator but the regex is pretty simple, so I don't see the point. I couldn't find a decent documentation for the zend 'regex' validator anywhere. If I don't override the default error message, I simple get something like : ';;;hhbhbhb' does not match against pattern '/^[(a-zA-Z0-9)]+$/' - which I obviously don't want to display to the user. I'd appreciate your inputs.

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  • I need to Split a string based on a complex delimiter

    - by Jason
    In C# I need to split a string (a log4j log file) into array elements based on a particular sequence of characters, namely "nnnn-nn-nn nn:nn:nn INFO". I'm currently splitting this log file up by newlines, which is fine except when the log statements themselves contain newlines. I don't control the input (the log file) so escaping them somehow is not an option. It seems like I should be able to use a comparator or a regex to identify the strings, but String.Split does not have an option like that. Am I stuck rolling my own, or is there a pattern or framework component that can be of help here?

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  • How do I write a custom validator for a zend form element with customized error messages?

    - by Mallika Iyer
    I have a question field with a list of allowed characters : A-Z,0-9,colon (:), question mark (?), comma(,), hyphen(-), apostrophe ('). I have the regex which works fine, in the fashion : $question->addValidator('regex', true, array(<regular expresstion>)) The default error message is something like ''' does not match against pattern '' I want to write a custom error message that says ' is not allowed in this field' Is there a simple way to do it using the existing zend components that I'm missing? Is writing a custom validator the only way to achieve what I'm trying to achieve? If yes, how do I write a custom validator (I looked at the documentation and didn't quite understand how I can customize the error messages) If there is any other way, I'd most appreciate that input too. Thanks for taking the time to answer this!

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  • JUnit Best Practice: Different Fixtures for each @Test

    - by Juri Glass
    Hi I understand that there are @Before and @BeforeClass, which are used to define fixtures for the @Test's. But what should I use if I need different fixtures for each @Test? Should I define the fixture in the @Test? Should I create a test class for each @Test? I am asking for the best practices here, since both solutions aren't clean in my opinion. With the first solution, I would test the initialization code. And with the second solution I would break the "one test class for each class" pattern.

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  • sql server 2008 notifications

    - by Alexander Stalt
    C#, VS 2005, Sql Server 2008 I have a database on a remote server. It has a table table1. Several clients works with it. Every(each?) client can change content of table1. Every(each?) client must represent actual content of this table. So I need some algorythm (pattern) to keep clients represent actual content of table1. I know that sql server 2008 supports notification mechanism (reporting services). How can I use it for my task ?

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  • simpledateformat parsing date with 'Z' literal

    - by DanInDC
    I am trying to parse a date that looks like this: 2010-04-05T17:16:00Z This is a valid date per http://www.ietf.org/rfc/rfc3339.txt. The 'Z' literal "imply that UTC is the preferred reference point for the specified time." If I try to parse it using SimpleDateFormat and this pattern: yyyy-MM-dd'T'HH:mm:ss It will be parsed as a Mon Apr 05 17:16:00 EDT 2010 SimpleDateFormat is unable to parse the string with these patterns: yyyy-MM-dd'T'HH:mm:ssz yyyy-MM-dd'T'HH:mm:ssZ I can explicitly set the TimeZone to use on the SimpleDateFormat to get the expected output, but I don't think that should be necessary. Is there something I am missing? Is there an alternative date parser?

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  • The handle is invalid when loading file or assembly AjaxControlToolkit

    - by Dharmik Bhandari
    I'm having one error repeatedly. The site is on ASP.NET 2.0 web form. There is no pattern to reproduce this error again because it occurs sometimes and it resolve by adding blank space at end of the in web.config. What could be the problem? Server Error in '/' Application. The handle is invalid. (Exception from HRESULT: 0x80070006 (E_HANDLE)) Exception Details: System.Runtime.InteropServices.COMException: The handle is invalid. (Exception from HRESULT: 0x80070006 (E_HANDLE)) [COMException (0x80070006): The handle is invalid. (Exception from HRESULT: 0x80070006 (E_HANDLE))] [FileLoadException: Could not load file or assembly 'AjaxControlToolkit, Version=3.0.30930.28736, Culture=neutral, PublicKeyToken=28f01b0e84b6d53e' or one of its dependencies. The handle is invalid. (Exception from HRESULT: 0x80070006 (E_HANDLE))] [ConfigurationErrorsException: Could not load file or assembly 'AjaxControlToolkit, Version=3.0.30930.28736, Culture=neutral, PublicKeyToken=28f01b0e84b6d53e' or one of its dependencies. The handle is invalid. (Exception from HRESULT: 0x80070006 (E_HANDLE))] System.Web.Configuration.CompilationSection.LoadAssemblyHelper(String assemblyName, Boolean starDirective) +613

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  • When to use AsyncOperation and AsyncOperationManager

    - by Sir Psycho
    Hi, I've spent many many hours tonight reading up on implementing the event-based asynchronous pattern Unfortunately, I haven't been able to find any articles at all on witting a class that only supports one Async invocation. Every example I've seen assumes that a method call will be called more than once and thus, should have a userState object passed into the MethodNameAsync You'll see that MS makes mention of this in the third bullet point on this article http://msdn.microsoft.com/en-us/library/ms228974(VS.80).aspx under the "Simultaneously Executing Operations" heading. But I'm confused. Should I be using AsyncOperation and AsyncOperationManager classes to have asynchronous functionality where a method can only be called by one thread at a time? A link would also be nice :) Thanks

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  • Server Push / HTTP Streaming on Windows Mobile / Windows CE

    - by afriza
    Hi, I find that HTTP Streaming / Server Push is quite promising for my project. Does someone have any clue on how to implement this in Windows Mobile? .NET / Native / other implementations are welcomed. Preferably with permissive license. some links on HTTP Steaming / Server Push: - Push Technology - Streaming HTTP / Server Push - Cross-browser implementation of “HTTP Streaming” (push) AJAX pattern - XEP-0124: Bidirectional-streams Over Synchronous HTTP (BOSH) I was thinking of using some Qt XMPP library (QXmpp) to do the job, but I'm not sure if it's up for the task and I also want to hear some opinions on this.

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  • How to use Dependency Injection with ASP.NET

    - by Schneider
    I am trying to work out a way to use Dependency Injection with ASP.NET controls. I have got lots of controls that create repositories directly, and use those to access and bind to data etc. I am looking for a pattern where I can pass repositories to the controls externally (IoC), so my controls remain unaware of how repositories are constructed and where they come from etc. I would prefer not to have a dependency on the IoC container from my controls, therefore I just want to be able to construct the controls with constructor or property injection. (And just to complicate things, these controls are being constructed and placed on the page by a CMS at runtime!) Any thoughts?

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  • Multiple Windows Forms on one application

    - by Shukhrat Raimov
    I have two windows forms, first is initial and second is invoked when button on the first is pressed. It's two different windows, with different tasks. I programmed for both MVP pattern. But in the Main() I have this: static void Main() { Application.EnableVisualStyles(); Application.SetCompatibleTextRenderingDefault(false); ViewFirst viewFirst = new ViewFirst();//First Form PresenterFirst presenterFirst = new PresenterFirst(viewFirst); Application.Run(viewFirst); } And I Have Second Windows Form: ViewSecond viewSecond = new ViewSecond();//Second Form PresenterSecond presenterSecond = new PresenterSecond(viewSecond); I want to run it in this app as soon as the button on the first is clicked. How could I do this? My button on the first WF is: private void history_button_Click(object sender, EventArgs e) { ViewSecond db = new ViewSecond();//second Form where I have sepparate WF. db.Show(); }

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  • CLR debugger and 'var'

    - by Ken
    I'm using the CLR debugger (version 8, from "Visual Studio 2005") to debug some C# code. I can step through my code, but for many variables, the debugger won't show me its value. That is, if I type it in the "Immediate" frame or add it to the "Watch" frame, it says "Unable to evaluate the expression.". It seems to do this a lot for var variables, but I'm also seeing it for parameters and properties, too. I have not been able to figure out what the pattern is. Is there a rule for when it can display the value of a variable? Is there something I need to do to my code, or in my build script, to make the debugger able to view variables? Or is there a hidden debugger setting?

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  • CoffeeScript Class Properties Within Nested Anonymous Functions

    - by Aric
    I'm just taking a look at CoffeeScript for the first time so bare with me if this is a dumb question. I'm familiar with the hidden pattern methodology however I'm still wrapping my head around object prototypes. I'm trying to create a basic class for controlling a section on my site. The problem I'm running into is losing defined class variables within a different scope. For example, the code below works fine and creates the properties within the object perfectly. However when I jump into a jQuery callback I lose all knowledge of the class variables storing some of the jQuery objects for multiple uses. Is there a way to grab them from within the callback function? class Session initBinds: -> @loginForm.bind 'ajax:success', (data, status, xhr) -> console.log("processed") return @loginForm.bind 'ajax:before', (xhr, settings) -> console.log @loader // need access to Session.loader return return init: -> @loginForm = $("form#login-form") @loader = $("img#login-loader") this.initBinds() return

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  • Spring security access with multiple roles

    - by Evgeny Makarov
    I want to define access for some pages for user who has one of following roles (ROLE1 or ROLE2) I'm trying to configure this in my spring security xml file as following: <security:http entry-point-ref="restAuthenticationEntryPoint" access-decision-manager-ref="accessDecisionManager" xmlns="http://www.springframework.org/schema/security" use-expressions="true"> <!-- skipped configuration --> <security:intercept-url pattern="/rest/api/myUrl*" access="hasRole('ROLE1') or hasRole('ROLE2')" /> <!-- skipped configuration --> </security:http> I've tried various ways like: access="hasRole('ROLE1, ROLE2')" access="hasRole('ROLE1', 'ROLE2')" access="hasAnyRole('[ROLE1', 'ROLE2]')" etc but nothing seems to be working. I'm keep getting exception java.lang.IllegalArgumentException: Unsupported configuration attributes: or java.lang.IllegalArgumentException: Failed to parse expression 'hasAnyRole(['ROLE1', 'ROLE2'])' how should it be configured? Thanks

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  • How to write a linter?

    - by jbdavid
    In my day job I, and others on my team write a lot of hardware models in Verilog-AMS, a language supported primarily by commercial vendors and a few opensource simulator projects. One thing that would make supporting each others code more helpful would be a LINTER that would check our code for common problems and assist with enforcing a shared code formatting style. I of course want to be able to add my own rules and, after I prove their utility to myself, promote them to the rest of the team.. I don't mind doing the work that has to be done, but of course also want to leverage the work of other existing projects. Does having the allowed language syntax in a yacc or bison format give me a leg up? or should I just suck each language statement into a perl string, and use pattern matching to find the things I don't like? (most syntax and compilation errors are easily caught by the commercial tools.. but we have some of our own extentions.)

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  • Making a module based social networking cms

    - by Manan
    What does it take to create a social networking cms like phpfox or socialengine . I am interested in using php / mysql . However , I want it to be modular , like above examples . Like I can enable disable videos from backend . Most important , it should have ability to allow others to extend it , like facebook applications . Should I follow a framework [ cakephp or something ]? Should I use some pattern [ factory or singleton ] ? Is there any book available on subject ?

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