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• Ruby module_function, invoking module's private method, invoked in class method style on module shows error

  - by Jignesh

  test_module.rb module MyModule def module_func_a puts "module_func_a invoked" private_b end module_function :module_func_a private def private_b puts "private_b invoked" end end class MyClass include MyModule def test_module module_func_a end end Invoking module function from class c = MyClass.new c.test_module Output 1: $ ruby test_module.rb module_func_a invoked private_b invoked Invoking module function on module in class method style ma = MyModule.module_func_a Output 2: module_func_a invoked test_module.rb:5:in `module_func_a': undefined local variable or method `private_b' for MyModule:Module (NameError) from test_module.rb:31 As can be seen from the Output 1 and Output 2 when including the module in a class, no issue occurs when a module's private method gets invoked from a module function while in case when directly invoking the module function on the module in class method style the module's private method, invoked from module function, is not found. Can anybody make me understand the reason behind above behavior and whether invoking module function (which in turn invokes module's private method) on module in class method style is possible or not? If possible, then what rectifications are required in my code to do the same? Thanks, Jignesh

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• python subprocess block

  - by MW

  Hello. I'm having a problem with the module subprocess. I'm running a script from python through: subprocess.Popen('./run_pythia.sh',shell=True).communicate() and sometimes it just blocks and it doesn't finish to execute the script. Before I was using .wait() instead of .communicate() but then because of this: http://dcreager.net/2009/08/06/subprocess-communicate-drawbacks/ I changed to .communicate(). Nevertheless the problem continues. Can anyone help me?

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• Subprocess fails to catch the standard output

  - by user343934

  I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "<string>", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in <module> align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO\__init__.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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• Error setting env thru subprocess.call to run a python script on a remote linux machine

  - by John Smith

  I am running a python script on a windows machine to invoke another python script on a remote linux machine. I am using subprocess.call with ssh to do this, like below: subprocess.call('ssh -i <identify file> username@hostname python <script_on_linux_machine>') and this works fine. However, if I want to set some environment variables, like below: subprocess.call('ssh -i <identify file> username@hostname python <script_on_linux_machine>', env={key1:value1}) it fails. I get the following error: ssh_connect: getnameinfo failed ssh: connect to host <hostname> port 22: Operation not permitted 255 I've tried splitting the ssh commands into list and passing. Didn't help. I've tried to run other 'local'(windows) commands thru subprocess.call() and tried setting the env. It works fine. I've tried to run other commands(such as ls) on the remote linux machine. Again, subprocess.call() works fine, as long as I don't try to set the environment. What am I doing wrong? Would I be able to set the environment for a python script on a remote machine? Any help will be appreciated.

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• why does setting stderr=subprocess.STDOUT fix a subprocess.check_output call?

  - by ShankarG

  I have a python script running on a small server that is called in three different ways - from within another python script, by cron, or by gammu-smsd (an SMS daemon with the wonderful mobile utility [gammu]). The script is for maintenance and contained the following kludge to measure used space on the system (presumably this is possible from within Python, but this was quick and dirty): reportdict['Used Space'] = subprocess.check_output(["df / | tail -1 | awk '{ print $5; }'"], shell=True)[0:-1] Oddly enough this line would only fail when the script was called by a shell script running from gammu-smsd. The line would fail with a CalledProcessError exception saying "returned exit status 2", even though the output attribute of the CalledProcessError object contained the correct output. The only command in the sequence of shell commands that would give such an error status would be awk, with status 2 indicating a fatal error. If the python script with this line was called by cron, by another python script, or from the command line, this line would work fine. I broke my head trying to fix the environment for the script, thinking this must be the problem. Finally though I put in stderr=subprocess.STDOUT, like so: reportdict['Used Space'] = subprocess.check_output(["df / | tail -1 | awk '{ print $5; }'"], stderr=subprocess.STDOUT, shell=True)[0:-1] This was a debug measure to help me figure out if some output was coming on stderr. But after this the script started working, even when called from gammu-smsd! Why might this be the case? I ask for future reference when using subprocess...

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• Multiple calls to /dev/stdin using python subprocess (*nix)

  - by Alex Leach

  Hi, I have a python subprocess call which I would like to link up to three pipes (two standard in and one standard out). I know that there is only one /dev/stdin, but there's all those other devices in /dev I don't know about, and don't know of any python os, sys or subprocess modules that will utilise them in a manner which allows me to give the device path to subprocess.Popen. The reason I ask is because I would like to pipe information from a mysql database or tar archive rather than a directory structure I currently have which has 28,000 directories in. The directory names alone uses a LOT of space! The alternative is to tar / gunzip the entire directory structure and manoeuvre through the compressed archive. With either solution, mysql or tar, I would still like to have two pipes into subprocess.Popen and one out, so that I can bypass the HDD. Any need for an example??

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• Getting PATH right for python after MacPorts install

  - by BenjaminGolder

  I can't import some python libraries (PIL, psycopg2) that I just installed with MacPorts. I looked through these forums, and tried to adjust my PATH variable in $HOME/.bash_profile in order to fix this but it did not work. I added the location of PIL and psycopg2 to PATH. I know that Terminal is a version of python in /usr/local/bin, rather than the one installed by MacPorts at /opt/local/bin. Do I need to use the MacPorts version of Python in order to ensure that PIL and psycopg2 are on sys.path when I use python in Terminal? Should I switch to the MacPorts version of Python, or will that cause more problems? In case it is helpful, here are more facts: PIl and psycopg2 are installed in /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages which pythonreturns/usr/bin/python echo $PATHreturns (I separated each path for easy reading): :/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/ :/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages :/opt/local/bin :/opt/local/sbin :/usr/local/git/bin :/usr/bin :/bin :/usr/sbin :/sbin :/usr/local/bin :/usr/local/git/bin :/usr/X11/bin :/opt/local/bin in python, sys.path returns: /Library/Frameworks/SQLite3.framework/Versions/3/Python /Library/Python/2.6/site-packages/numpy-override /Library/Frameworks/GDAL.framework/Versions/1.7/Python/site-packages /Library/Frameworks/cairo.framework/Versions/1/Python /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python26.zip /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6 /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/plat-darwin /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/plat-mac /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/plat-mac/lib-scriptpackages /System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/lib-tk /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/lib-old /System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/lib-dynload /Library/Python/2.6/site-packages /System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/PyObjC /System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/wx-2.8-mac-unicode I welcome any criticism and comments, if any of the above looks foolish or poorly conceived. I'm new to all of this. Thanks! Running OSX 10.6.5 on a MacBook Pro, invoking python 2.6.1 from Terminal

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• Python: Streaming Input with Subprocesses

  - by beary605

  Since input and raw_input() stop the program from running anymore, I want to use a subprocess to run this program... while True: print raw_input() and get its output. This is what I have as my reading program: import subprocess process = subprocess.Popen('python subinput.py', stdout=subprocess.PIPE, stderr=subprocess.PIPE) while True: output=process.stdout.read(12) if output=='' and process.poll()!=None: break if output!='': sys.stdout.write(output) sys.stdout.flush() When I run this, the subprocess exits almost as fast as it started. How can I fix this?

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• Python subprocess: 64 bit windows server PIPE doesn't exist :(

  - by Spaceman1861

  I have a GUI that launches selected python scripts and runs it in cmd next to the gui window. I am able to get my launcher to work on my (windows xp 32 bit) laptop but when I upload it to the server(64bit windows iss7) I am running into some issues. The script runs, to my knowledge but spits back no information into the cmd window. My script is a bit of a Frankenstein that I have hacked and slashed together to get it to work I am fairly certain that this is a very bad example of the subprocess module. Just wondering if i could get a hand :). My question is how do i have to alter my code to work on a 64bit windows server. :) from Tkinter import * import pickle,subprocess,errno,time,sys,os PIPE = subprocess.PIPE if subprocess.mswindows: from win32file import ReadFile, WriteFile from win32pipe import PeekNamedPipe import msvcrt else: import select import fcntl def recv_some(p, t=.1, e=1, tr=5, stderr=0): if tr < 1: tr = 1 x = time.time()+t y = [] r = '' pr = p.recv if stderr: pr = p.recv_err while time.time() < x or r: r = pr() if r is None: if e: raise Exception(message) else: break elif r: y.append(r) else: time.sleep(max((x-time.time())/tr, 0)) return ''.join(y) def send_all(p, data): while len(data): sent = p.send(data) if sent is None: raise Exception(message) data = buffer(data, sent) The code above isn't mine def Run(): print filebox.get(0) location = filebox.get(0) location = location.__str__().replace(listbox.get(ANCHOR).__str__(),"") theTime = time.asctime(time.localtime(time.time())) lastbox.delete(0, END) lastbox.insert(END,theTime) for line in CookieCont: if listbox.get(ANCHOR) in line and len(line) > 4: line[4] = theTime else: "Fill In the rip Details to record the time" if __name__ == '__main__': if sys.platform == 'win32' or sys.platform == 'win64': shell, commands, tail = ('cmd', ('cd "'+location+'"',listbox.get(ANCHOR).__str__()), '\r\n') else: return "Please use contact admin" a = Popen(shell, stdin=PIPE, stdout=PIPE) print recv_some(a) for cmd in commands: send_all(a, cmd + tail) print recv_some(a) send_all(a, 'exit' + tail) print recv_some(a, e=0) The Code above is mine :)

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• Clean stop of Python bottle webserver when started from subprocess

  - by luc

  Hello all, I would like to embed the great Bottle web framework into a small application (1st target is Windows OS). This app starts the bottle webserver thanks to the subprocess module. import subprocess p = subprocess.Popen('python websrv.py') The bottle app is quite simple @route("/") def index(): return template('index') run(reloader=True) It starts the default webserver into a Windows console. All seems Ok except the fact that I must press Ctrl-C to close the bottle webserver. I would like that the master app terminates the webserver when it shutdowns. I can't find a way to do that (p.terminate() doesn't work in this case unfortunately) Any idea? Thanks in advance

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• why does python.subprocess hang after proc.communicate()?

  - by ccfenix

  I've got an interactive program called my_own_exe. First, it prints out alive, then you input S\n and then it prints out alive again. Finally you input L\n. It does some processing and exits. However, when I call it from the following python script, the program seemed to hang after printing out the first 'alive'. Can anyone here tell me why this is happening? Thanks proc2 = subprocess.Popen("my_own_exe", shell=True , stdin=subprocess.PIPE, stdout=subprocess.PIPE) print proc2.communicate()[0] time.sleep(2); print "alive" # 'hang' after print this line proc2.communicate('S\n')[0] print "alive" print proc2.communicate()[0] time.sleep(6)

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• Unbuffered subprocess output (last line missing)

  - by plok

  I must be overlooking something terribly obvious. I need to execute a C program, display its output in real time and finally parse its last line, which should be straightforward as the last line printed is always the same. process = subprocess.Popen(args, shell = True, stdout = subprocess.PIPE, stderr = subprocess.PIPE) # None indicates that the process hasn't terminated yet. while process.poll() is None: # Always save the last non-emtpy line that was output by the child # process, as it will write an empty line when closing its stdout. out = process.stdout.readline() if out: last_non_empty_line = out if verbose: sys.stdout.write(out) sys.stdout.flush() # Parse 'out' here... Once in a while, however, the last line is not printed. The default value for Popens's bufsize is 0, so it is supposed to be unbuffered. I have also tried, to no avail, adding fflush(stdout) to the C code just before exiting, but it seems that there is absolutely no need to flush a stream before exiting a program. Ideas anyone?

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• How to stop the Bottle webserver when started from subprocess

  - by luc

  Hello all, I would like to embed the great Bottle web framework into a small application (1st target is Windows OS). This app starts the bottle webserver thanks to the subprocess module. import subprocess p = subprocess.Popen('python websrv.py') The bottle app is quite simple @route("/") def index(): return template('index') run(reloader=True) It starts the default webserver into a Windows console. All seems Ok except the fact that I must press Ctrl-C to close the bottle webserver. I would like that the master app terminates the webserver when it shutdowns. I can't find a way to do that (p.terminate() doesn't work in this case unfortunately) Any idea? Thanks in advance

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• Python subprocess: callback when cmd exits

  - by Anon

  Hi, I'm currently launching a programme using subprocess.Popen(cmd, shell=TRUE) I'm fairly new to Python, but it 'feels' like there ought to be some api that lets me do something similar to: subprocess.Popen(cmd, shell=TRUE, postexec_fn=function_to_call_on_exit) I am doing this so that function_to_call_on_exit can do something based on knowing that the cmd has exited (for example keeping count of the number of external processes currently running) I assume that I could fairly trivially wrap subprocess in a class that combined threading with the Popen.wait() method, but as I've not done threading in Python yet and it seems like this might be common enough for an API to exist, I thought I'd try and find one first. Thanks in advance :)

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• Capture subprocess output

  - by schneck

  Hi there, I learned that when executing commands in Python, I should use subprocess. What I'm trying to achieve is to encode a file via ffmpeg and observe the program output until the file is done. Ffmpeg logs the progress to stderr. If I try something like this: child = subprocess.Popen(command, shell=True, stderr=subprocess.PIPE) complete = False while not complete: stderr = child.communicate() # Get progress print "Progress here later" if child.poll() is not None: complete = True time.sleep(2) the programm does not continue after calling child.communicate() and waits for the command to complete. Is there any other way to follow the output?

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• Learn to use PHP and Python with Oracle Database

  - by christopher.jones

  The Oracle Learning Library has posted up the latest "Oracle By Example" labs giving an introduction to PHP & Python with the Oracle Database : Using PHP with Oracle Database 11g - a basic introduction Developing a PHP Web Application with Oracle Database 11g - a Zend Framework application using the NetBeans IDE Using Python With Oracle Database 11g - a basic introduction Using the Django Framework with Python and Oracle Database 11g - a basic web application

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• Python 2.4 inline if statements

  - by Marcus Whybrow

  I am setting up an existing django project on a dreamhost web server, so far I have got everything to work correctly. However I developed under python 2.5 and dreamhost by default uses python 2.4. The following line seems gives a syntax error because of the if keyword: 'parent': c.parent.pk if c.parent is not None else None ^ Is it the case that this form of if statement was introduced in Python 2.5, if so is there an easy change that would make it compatible with Python 2.4? Or, should I just change to Python 2.5. I have already installed python 2.5 to a directory under my home directory, and have succeeded in running the python interpreter under 2.5. If I wish to use Python 2.5 for everything, where can I set this?

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• Terminate subprocess in Windows, access denied

  - by Jesse Aldridge

  - import time import subprocess from os.path import expanduser chrome_path = expanduser('~\Local Settings\Application Data\Google\Chrome\Application\chrome.exe') proc = subprocess.Popen(chrome_path) time.sleep(4) proc.terminate() Output: WindowsError: [Error 5] Access is denied How can I kill the Chrome process?

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• Unicode filename to python subprocess.call()

  - by otrov

  I'm trying to run subprocess.call() with unicode filename, and here is simplified problem: n = u'c:\\windows\\notepad.exe ' f = u'c:\\temp\\nèw.txt' subprocess.call(n + f) which raises famous error: UnicodeEncodeError: 'ascii' codec can't encode character u'\xe8' Encoding to utf-8 produces wrong filename, and mbcs passes filename as new.txt without accent I just can't read any more on this confusing subject and spin in circle. I found here lot of answers for many different problems in past so I thought to join and ask for help myself Thanks

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• Catching and outputting stderr at the same time with python's subprocess

  - by Mediocre Gopher

  (Using python 3.2 currently) I need to be able to: Run a command using subprocess Both stdout/stderr of that command need be printed to the terminal in real-time (it doesn't matter if they both come out on stdout or stderr or whatever At the same time, I need a way to know if the command printed anything to stderr (and preferably what it printed). I've played around with subprocess pipes as well as doing strange pipe redirects in bash, as well as using tee, but as of yet haven't found anything that would work. Is this something that's possible?

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• Python Importing object that originates in one module from a different module into a third module

  - by adewinter

  I was reading the sourcode for a python project and came across the following line: from couchexport.export import Format (source: https://github.com/wbnigeria/couchexport/blob/master/couchexport/views.py#L1 ) I went over to couchexport/export.py to see what Format was (Class? Dict? something else?). Unfortunately Format isn't in that file. export.py does however import a Format from couchexport.models where there is a Format class (source: https://github.com/wbnigeria/couchexport/blob/master/couchexport/models.py#L11). When I open up the original file in my IDE and have it look up the declaration, in line I mentioned at the start of this question, it leads directly to models.py. What's going on? How can an import from one file (export.py) actually be an import from another file (models.py) without being explicitly stated?

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• python: nonblocking subprocess, check stdout

  - by Will Cavanagh

  Ok so the problem I'm trying to solve is this: I need to run a program with some flags set, check on its progress and report back to a server. So I need my script to avoid blocking while the program executes, but I also need to be able to read the output. Unfortunately, I don't think any of the methods available from Popen will read the output without blocking. I tried the following, which is a bit hack-y (are we allowed to read and write to the same file from two different objects?) import time import subprocess from subprocess import * with open("stdout.txt", "wb") as outf: with open("stderr.txt", "wb") as errf: command = ['Path\\To\\Program.exe', 'para', 'met', 'ers'] p = subprocess.Popen(command, stdout=outf, stderr=errf) isdone = False while not isdone : with open("stdout.txt", "rb") as readoutf: #this feels wrong for line in readoutf: print(line) print("waiting...\\r\\n") if(p.poll() != None) : done = True time.sleep(1) output = p.communicate()[0] print(output) Unfortunately, Popen doesn't seem to write to my file until after the command terminates. Does anyone know of a way to do this? I'm not dedicated to using python, but I do need to send POST requests to a server in the same script, so python seemed like an easier choice than, say, shell scripting. Thanks! Will

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• Gzip and subprocess' stdout in python

  - by pythonic metaphor

  I'm using python 2.6.4 and discovered that I can't use gzip with subprocess the way I might hope. This illustrates the problem: May 17 18:05:36> python Python 2.6.4 (r264:75706, Mar 10 2010, 14:41:19) [GCC 4.1.2 20071124 (Red Hat 4.1.2-42)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import gzip >>> import subprocess >>> fh = gzip.open("tmp","wb") >>> subprocess.Popen("echo HI", shell=True, stdout=fh).wait() 0 >>> fh.close() >>> [2]+ Stopped python May 17 18:17:49> file tmp tmp: data May 17 18:17:53> less tmp "tmp" may be a binary file. See it anyway? May 17 18:17:58> zcat tmp zcat: tmp: not in gzip format Here's what it looks like inside less HI ^_<8B>^H^Hh<C0><F1>K^B<FF>tmp^@^C^@^@^@^@^@^@^@^@^@ which looks like it put in the stdout as text and then put in an empty gzip file. Indeed, if I remove the "Hi\n", then I get this: May 17 18:22:34> file tmp tmp: gzip compressed data, was "tmp", last modified: Mon May 17 18:17:12 2010, max compression What is going on here?

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• Tech Article: Mastering Oracle+Python, Part 5 - Stored Procedures, Programming Python

  - by OracleTechnologyNetwork

  Calling database stored procedures and other interesting aspects of advanced Python programming

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• Error with python-setuptools doing "sudo easy_install python-graph-core"

  - by Dan

  Using easy_install, part of the python-setuptools, I get the following error: $ sudo easy_install python-graph-core [sudo] password for dan: Searching for python-graph-core Reading http://pypi.python.org/simple/python-graph-core/ Reading http://code.google.com/p/python-graph/ Reading http://code.google.com/p/python-graph/downloads/list?can=1 Reading http://code.google.com/p/python-graph/downloads/list Best match: python-graph-core 1.7.0 Downloading http://python-graph.googlecode.com/files/python-graph-core-1.7.0.tar.gz Processing python-graph-core-1.7.0.tar.gz Running python-graph-core-1.7.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-GwpYiM/python-graph-core-1.7.0/egg-dist-tmp-1yqbyV setup.py:8: Warning: 'as' will become a reserved keyword in Python 2.6 Traceback (most recent call last): File "/usr/bin/easy_install", line 8, in <module> load_entry_point('setuptools==0.6c9', 'console_scripts', 'easy_install')() File "/usr/lib/python2.5/site-packages/setuptools/command/easy_install.py", line 1671, in main with_ei_usage(lambda: File "/usr/lib/python2.5/site-packages/setuptools/command/easy_install.py", line 1659, in with_ei_usage return f() File "/usr/lib/python2.5/site-packages/setuptools/command/easy_install.py", line 1675, in <lambda> distclass=DistributionWithoutHelpCommands, **kw File "/usr/lib/python2.5/distutils/core.py", line 151, in setup dist.run_commands() File "/usr/lib/python2.5/distutils/dist.py", line 974, in run_commands self.run_command(cmd) File "/usr/lib/python2.5/distutils/dist.py", line 994, in run_command cmd_obj.run() File "/usr/lib/python2.5/site-packages/setuptools/command/easy_install.py", line 211, in run self.easy_install(spec, not self.no_deps) File "/usr/lib/python2.5/site-packages/setuptools/command/easy_install.py", line 446, in easy_install return self.install_item(spec, dist.location, tmpdir, deps) File "/usr/lib/python2.5/site-packages/setuptools/command/easy_install.py", line 476, in install_item dists = self.install_eggs(spec, download, tmpdir) File "/usr/lib/python2.5/site-packages/setuptools/command/easy_install.py", line 655, in install_eggs return self.build_and_install(setup_script, setup_base) File "/usr/lib/python2.5/site-packages/setuptools/command/easy_install.py", line 930, in build_and_install self.run_setup(setup_script, setup_base, args) File "/usr/lib/python2.5/site-packages/setuptools/command/easy_install.py", line 919, in run_setup run_setup(setup_script, args) File "/usr/lib/python2.5/site-packages/setuptools/sandbox.py", line 27, in run_setup lambda: execfile( File "/usr/lib/python2.5/site-packages/setuptools/sandbox.py", line 63, in run return func() File "/usr/lib/python2.5/site-packages/setuptools/sandbox.py", line 29, in <lambda> {'__file__':setup_script, '__name__':'__main__'} File "setup.py", line 8 except ImportError as ie: ^ SyntaxError: invalid syntax Any suggestions to what I may be doing wrong? Thanks, Dan

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