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• 50 sequences in one line

  - by user343934

  I have Muttiple sequence alignment (clustal) file and i want to read this file and arrange sequences in a such a way that in looks more clear and precise in order. I am doing this from biopython using AlignIO object. My codes like this alignment = AlignIO.read("opuntia.aln", "clustal") print "Number of rows: %i" % len(align) for record in alignment: print "%s - %s" % (record.id, record.seq) My Output-- http://i48.tinypic.com/ae48ew.jpg , it looks messy and long scrolling. What i want to do is print only 50 sequences in each line and continue till the end of alignment file. I wish to have output like this---http://i45.tinypic.com/4vh5rc.jpg from --http://www.ebi.ac.uk/Tools/clustalw2/, sorry two links are just a text due to my reputation. Any suggestions, algorithm and sample code is appreciated Thanks in advance Br,

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• Lablgtk2 Installation on Windows.

  - by Animesh

  Hi there people, I am currently relearning Ocaml and am in the need of a good editor. There is a new editor from OcamlForge: OCamlEditor http://ocamleditor.forge.ocamlcore.org/. Prerequisite for installation is Lablgtk2. Installing Lablgtk2 on windows is not straight forward and there is good instruction here: http://wwwfun.kurims.kyoto-u.ac.jp/soft/lsl/install-win32.txt I have completed the first two steps and in the third step, as warned, it is failing on the native code version. This is where I am left stranded. How do I check to see if the assembler is on my path? What am I missing here? Please help me move forward from this point. Sincere thanks. Animesh

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• What is the second best possible way to make this content box round corner (without border-radius)?

  - by jitendra

  Is it possible to make this box's corner round with same html tags. without using any other tag and border-radius property. but i can use css classes and background images. and box height should be depend on content of <p>grr</p> <h2>Nulla Facilisi</h2> <p> Phasellus at turpis lacus. Nulla hendrerit lobortis nibh. In lectus erat, blandit non feugiat vel, accumsan ac dolor. Etiam et ligula vel tortor tempus vehicula porttitor ut ligula. Mauris felis odio, fermentum vel </p> Edit : What is the best possible way to achieve this without css border-radius property which is not supported by internet explorer?

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• Is it possble to make this content box round corner?

  - by jitendra

  Is it possible to make this box's corner round with same html tags. without using any other tag. but i can use css classes. and box height should be depend on content of <p>grr</p> <h2>Nulla Facilisi</h2> <p> Phasellus at turpis lacus. Nulla hendrerit lobortis nibh. In lectus erat, blandit non feugiat vel, accumsan ac dolor. Etiam et ligula vel tortor tempus vehicula porttitor ut ligula. Mauris felis odio, fermentum vel </p>

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• Sending an Email Using Java

  - by user217029

  try{ Properties props = new Properties(); props.put("mail.smtp.host", "ipc-smtp.bits-pilani.ac.in"); Session sess = Session.getInstance(props, null); sess.setDebug(true); Message msg = new MimeMessage(sess); InternetAddress addressFrom = new InternetAddress("[email protected]"); msg.setFrom(addressFrom); msg.setRecipient(Message.RecipientType.TO, new InternetAddress("[email protected]")); msg.addHeader("MyHeaderName", "myHeaderValue"); msg.setSubject("Test"); msg.setContent("Yippe", "text/plain"); Transport.send(msg); }catch(Exception exp){ exp.printStackTrace(); } The error is javax.mail.MessagingException: 554 The mail was blocked due to zen-spamhaus RBL action This is my college's smtp server.

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• Algorithm for Determining Variations of Differing Lengths

  - by joseph.ferris

  I have four objects - for the sake of arguments, let say that they are the following letters: A B C D I need to calculate the number of variations that can be made for these under the following two conditions: No repetition Objects are position agnostic Taking the above, this means that with a four object sequence, I can have only one sequence that matches the criteria (since order is not considered for being unique): ABCD There are four variations for a three object combination from the four object pool: ABC, ABD, ACD, and BCD There are six variations for a two object combination from the four object pool: AB, AC, AD, BC, BD, and CD And the most simple one, if taken on at a time: A, B, C, and D I swear that this was something covered in school, many, many years ago - and probably forgotten since I didn't think I would use it. :-) I am anticipating that factorials will come into play, but just trying to force an equation is not working. Any advice would be appreciated.

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• Array of strings and char ** environ variable.

  - by Naruto Uzumaki

  Hello! I want to know how an array of strings is declared? What I do is I declare an array of pointers of pointers to strings. Eg. char *array[]= {"string1","string2","string3"}; I was reading about modifying environment variables in Linux and stumbled upon the pointer char **environ ( http://www.cs.bham.ac.uk/resources/courses/2005/17423/doc/libc/Environment-Access.html#Environment-Access ). char **environ is declared as an array of strings. I think it should be a pointer to a pointer. For eg. char *array[]= {"string1","string2","string3"}; environ = array; Am I doing something wrong? I also read somewhere that char *argv[] = char **argv. How is it possible?

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• Improved Genetic algorithm for multiknapsack problem

  - by user347918

  Hello guys, Recently i've been improving traditional genetic algorithm for multiknapsack problem. So My Improved Genetic Algorithm is working better then Traditional Genetic Algorithm. I tested. (i used publically available from OR-Library (http://people.brunel.ac.uk/~mastjjb/jeb/orlib/mknapinfo.html) were used to test the GAs.) Does anybody know other improved GA. I wanted to compare with other improved genetic algorithm. Actually i searched in internet. But couldn't find good algorithm to compare.

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• Passing 2D array with variable dimensions as function argument

  - by TheCrazyProgrammer

  I just saw the following code among the successful submissions at codechef. http://www.codechef.com/viewplaintext/1595846 I used to think that float max(int n,int arr[n][n]) {....} is not allowed in C++ (as 'n' is a variable). My CodeBlocks (on windows) with MinGW [gcc 4.4] gives compile time error. that "error: array bound is not an integer constant. Then how can be such a solution be accepted by CodeChef's judge. Is there any special flag that allows us to do that in C++??? EDIT: A link showing status as AC (accepted) : http://www.codechef.com/viewsolution/1595846

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• CRC32 calculations for png chunk doesn't match the real one

  - by user2507197

  I'm attempting to mimic the function used for creating CRC's in PNG files, I'm using the autodin II polynomial and the source code from: http://www.opensource.apple.com/source/xnu/xnu-1456.1.26/bsd/libkern/crc32.c My tests have all been for the IHDR chunk, so my parameters have been: crc - 0xffffffff and 0 (both have been suggested) buff - the address of the IHDR Chunk's type. length - the IHDR Chunk's length + 4 (the length of the chunk's data + the length of the type) I printed the calculated CRC in binary, which I compared to the actual CRC of the chunk. I can see no similarities (little-big endian, reversed bits, XOR'd, etc). This is the data for the IHDR chunk (hexadecimal format): length(big endian): d0 00 00 00 (13) type: 49 48 44 52 data: 00 00 01 77 00 00 01 68 08 06 00 00 00 existing CRC: b0 bb 40 ac If anyone can tell me why my calculations are off, or give me a CRC32 function that will work I would greatly appreciate it. Thank-you!

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• How to serialize a data of type string without using StringWriter as input

  - by starz26

  I want to serialize a input data of type string, but do not want to use StringWriter and StringReader for for serializing/Deserializing. The reason for this is when a escapse chars are sent as part of the Input string for serializing, it is serialized but some Spl chars are inserted in the xml(eg:"
  ").I'm getting an XMl error while deserializing this serialized data. void M1() { string str = 23 + "AC"+(char)1; StringWriter sw = new StringWriter(); XmlSerializer serializer = new XmlSerializer(typeof(String)); serializer.Serialize(sw, str); System.Console.WriteLine("String encoded to XML = \n{0} \n", sw.ToString()); StringReader sr = new StringReader(sw.ToString()); String s2 = (String)serializer.Deserialize(sr); System.Console.WriteLine("String decoded from XML = \n {0}", s2); }

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• Send and receive data trough the power network

  - by luvieere

  I'm not interested in a hardware solution, I want to know about software that may "read" modulated signal received trough the power supply - some sort of a low-level driver that would access the power signal in a convenient place and demodulate it. Is there a way to receive signal from the computer's power supply? I'm interested in an API or library that would allow the computer to be seen as a node in a Power Line Communication network and receive data directly through the power cable, without the need for a converter. Is there any active research in this field? Edit: There is software that reads monitors and displays internal component voltages - DC voltage after being converted and filtered by the power supply - now I need is a method of data encoding that would be invariant to conversion and filtering, the original signal embedded in AC being present in some form within the converted DC signal.

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• Special characters incongruence

  - by Enrique

  Hello I'm building a Spring MVC web application that runs on Tomcat 6.0.20 and JDK 1.6.0_19. When I send some special characters through an HTML form some of them are stored as question marks ? For example these symbols are stored correctly: €, á, é, í, ‰, etc But some symbols are replaced with ? like: £, ?, ? MySQL tables charset is utf-8. My jsp also use utf-8 <%@ page language="java" contentType="text/html; charset=UTF-8" pageEncoding="UTF-8" %> I have included org.springframework.web.filter.CharacterEncodingFilter in web.xml as suggested here When I debug the POST request when sending 3 characters €a£ with firebug I get: %E2%82%ACa%E2%82%A4 which is correct since E2 82 AC is the code for € and E2 82 A4 is the code for £ but £ is stored as ? in the database. When I save £ directly into the database it is displayed correctly in the webpage. How can I fix this?

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• What is the second best possible way to make this Content Box's (Fixed width) corners round (without

  - by jitendra

  Is it possible to make this box's corner round with same html tags. without using any other tag and border-radius property and javascript. but i can use css classes and background images. and box height should be depend on content of <p>grr</p> Width of Box and height of <h2> is fixed , but I need height of content flexible. <h2>Nulla Facilisi</h2> <p> Phasellus at turpis lacus. Nulla hendrerit lobortis nibh. In lectus erat, blandit non feugiat vel, accumsan ac dolor. Etiam et ligula vel tortor tempus vehicula porttitor ut ligula. Mauris felis odio, fermentum vel </p> Edit : What is the best possible way to achieve this without css border-radius property which is not supported by internet explorer?

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• Jquery ui autocomplete different source

  - by voidnull

  Hi i try to use jquery ui autocomplete. I have different autocomplete field in one page and i need to get data with different sources (different url) depend to wich autocomplete field is used. i know how can i get the typed data (request.term), but i cant find the way to get the selected field ID. $(".ac").autocomplete({ source: function(request, response) { id = '??? the actually used field #id ???'; $.ajax({ type: "POST", url: "/admin_/sql/autocomplete/"+id, data: "test=...", async: false, success: function(data) { } }); }, search: function() { // }, focus: function() { // return false; }, select: function(event, ui) { // return false; } });

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• Need a Concatenating VBA code to prevent memory issue workaround

  - by doharr

  My set up: Have 50,000 rows of data. ( My row count will increase in the future. So might as well say I have a full worksheet of 64000+ rows.) All Data is TEXT, no formulas, etc. Column A is open Columns B thru AC contain the Data that needs to be concatenated The Data in the rows once concatenated to Column A will contain 60,000 digits or 6kb in file size. After additional maniuplation each cell will become a file. I have tried concatenating in Excel and I run into memory issues. The memory issue is when I Select and fill down the concatenating function into the worksheet. It crashes at the 8200 +/-row. My system is 2gb of ram, windows xp professional and Excel 2003. Have 4GB of disk space Hoping to find a VBA code that will conserve memory, and not crash like it does in excel. Thank you

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• How to insert complex strings into Actionscript?

  - by Ole Jak

  How to insert complex strings into Actionscript? So I have a string -vvv -I rc w:// v dv s="60x40" --ut="#scode{vcode=FV1,acode=p3,ab=128,ch=2,rate=4400}:dup{dt=st{ac=http{mime=v/x-flv},mux=mpeg{v},dt=:80/sm.fv}}" How to insert it into code like public var SuperPuperComplexString:String = new String(); SuperPuperComplexString = TO_THAT_COMPLEX_STRING; That string has so many problems like some cart of it can happen to be like regexp BUTI DO NOT want it to be parsed as any kind of reg exp - I need It AS IT IS!) How to put that strange string into variable (put it not inputing it thru UI - hardcode it into AS code)?

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• why C clock() returns 0

  - by eddy ed

  I've got something like this: clock_t start, end; start=clock(); something_else(); end=clock(); printf("\nClock cycles are: %d - %d\n",start,end); and I always get as an output "Clock cycles are: 0 - 0" Any idea why this happens? (Just to give little detail, the something_else() function performs a left-to-right exponentiation using montgomery represantation, moreover I don't know for certain that the something_else() function does indeed take some not negligible time.) This is on Linux. The result of uname -a is: Linux snowy.*****.ac.uk 2.6.32-71.el6.x86_64 #1 SMP Fri May 20 03:51:51 BST 2011 x86_64 x86_64 x86_64 GNU/Linux

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• Comma separated values in a database field

  - by John Doe

  I have a products table. Each row in that table corresponds to a single product and it's identified by a unique Id. Now each product can have multiple "codes" associated with that product. For example: Id | Code ---------------------- 0001 | IN,ON,ME,OH 0002 | ON,VI,AC,ZO 0003 | QA,PS,OO,ME What I'm trying to do is create a stored procedure so that I can pass in a codes like "ON,ME" and have it return every product that contains the "ON" or "ME" code. Since the codes are comma separated, I don't know how I can split those and search them. Is this possible using only TSQL? Edit: It's a mission critical table. I don't have the authority to change it.

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• weird problem..the exact xml work in one host and not working in another...

  - by Ofear

  hi all! i search alot for this but can't find an aswer... I have made a working xml parser using php. till today i host my files on a free web host, and everything works just fine. today i got access to my college server and i host my files there. now for some reason.. i can't make the parser work as i was in the free host... look on those files please: working site: xml file: [http://ofear.onlinewebshop.net/asce/calendar.xml] working parser is this: [http://ofear.onlinewebshop.net/asce/calendar.php] (the lower table is the xml,it's hebrew) not working site: xml file: [http://apps.sce.ac.il/agoda/calendar.xml] not working parser is this: [http://apps.sce.ac.il/agoda/calendar.php] anyone have idea why it's not working.. those are the same files and they should work. maybe it a server problem? calendar.xml: <?xml version="1.0" encoding="UTF-8" ?> <events> <record> <event>??? ???? ????? ???? ???</event> <eventDate>30/12/2010</eventDate> <desc>?????? ?? ????</desc> </record> <record> <event>??? ???? ??????? - 2 : ???? ??? ???? ??????</event> <eventDate>22/12/2010</eventDate> <desc>????? ???? ??????? ?????? ??? ???? ??????? ?????? ????? ?????? ?? ??? ???? ??????? 2 ??????? ????? ???????? 22-23 ?????? 2010. ???? ????? ???? ????? "?????? ????"</desc> </record> <record> <event>????? ???? ?????? ?????? - ?? ????</event> <eventDate>5/12/2010</eventDate> <desc>??? ????? 17:30-20:45</desc> </record> </events> parser: <?php $doc = new DOMDocument(); $doc->load( 'calendar.xml' ); $events = $doc->getElementsByTagName( "record" ); foreach( $events as $record ) { $events = $record->getElementsByTagName( "event" ); $event = $events->item(0)->nodeValue; $eventDates= $record->getElementsByTagName( "eventDate" ); $eventDate= $eventDates->item(0)->nodeValue; $descs = $record->getElementsByTagName( "desc" ); $desc = $descs->item(0)->nodeValue; echo "<tr><td>$event</td><td>$eventDate</td><td>$desc</td></tr>"; } ?> after a little debugging i saw that it's stop here: $doc = new DOMDocument(); and it's not doing anything after that. i think that the line above is the cos

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• Java scanner - taking specific part of line

  - by user1290213

  Hi ive got a log file containing trace routes and pings. Ive seperated these by using if(scanner.nextLine().startsWith("64 bytes"){} so i can work with just the pings for now. All im interested in from the ping is time=XX example data line = 64 bytes from ziva.zarnet.ac.zw (209.88.89.132): icmp_seq=119 ttl=46 time=199 ms I have been reading other peoples similar questions and im not sure how to apply to mine. I literally need just the number as i will be putting them into a csv file so i can make a graph of the data.

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• Can I override a group policy setting as a machine admin?

  - by Max

  Group policy prevents several configuration settings on my Windows 7 / Vista machines. Since my domain account is a member of the local Administrators group on these boxes, is there still a way to override them locally? For instance, GP prevents changing the power management option "Turn off the display" (even changing it from cmd fails: POWERCFG -X -monitor-timeout-ac 60 = "An unexpected error condition has occurred. Unable to perform operation. You may not have permission to perform this operation.") Even when logging on with a local account and not the domain account, it's not possible to change the setting anymore ..

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• Did anybody use the constream (constrea.h) lib?

  - by user337938

  Two years ago, I used the conio.h (actually conio2.h for Dev-C++) to create a console form interface. Now I want to make the same thing, but C++ std lib does not provide the needed functions and I don't want to use the old C conio lib. I found some websites which highlights the constream lib, but I have no idea to use it on VS! I tried just copying the header file into my project, but VS show several erros. I believe I am doing something wrong. ps: i got this file: ftp://ftp.cs.technion.ac.il/pub/misc/baram/TC31/INCLUDE/CONSTREA.H

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• How to get over “Did I lock the door?” syndrome

  - by Boonei

  I am person who always asks myself  ”Did I lock the house door?”,  And I do ask that question when I have almost reached office. I don’t have a bad memory or I am not a “forget it all after a min person”. Infact I have a fantastic memory of things. This problem has been haunting me for a very long time. My wife used to always have a angry face after we had get down from the car. Because after we have walked for about 20 yards I would run back to the car to check if I had locked the car, you see this problem exists for all locked objects. This happens everyday all round the year. Now a days I don’t have the problem ! I did not get the solution from any doctor or any book that that talks about my inner mind. It was a practical advice given by my aunt….. When I told her that I had this problem, she smiled and said its very very easy to get around this. I was stunned. The solution she gave me was simple. After I had locked the door, should hold the lock and look at it for 5 sec and say to myself   “I have locked the door”. Believe me it works like a charm. The reason why it works is my aunt goes to explain, that your mind always thinks twice of important things that we do on our daily life and raises doubts after sometime. The only way to stop is it by looking at it, holding it and telling yourself that its ok and its done. This holds good for all the things that you generally doubt like, did I turn off the AC?, did I turn off the lights in the house when I left?. Just look at it for 5 sec, hold it tell yourself its done. You will not look back. Image credit [Håkan Dahlström]   This article titled,How to get over “Did I lock the door?” syndrome, was originally published at Tech Dreams. Grab our rss feed or fan us on Facebook to get updates from us.

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• How to stream H264 Video from camera over FTP?

  - by Jay

  I bought a h264 security camera system last year and set it up to ftp video to my computer. I was able to get the video to play (even though it played a little fast) on Ubuntu 11.04 using mplayer. A few months ago, I did a fresh install of 12.04 and I cannot seem to get the video to play with mplayer, smplayer or VLC. I have the restricted formats video packages installed and when playing with any of the players, all I get is a gray video. When calling mplayer from the command line to play the video with no options, I get a lot of these errors: [h264 @ 0x7f278c61f280]concealing 1320 DC, 1320 AC, 1320 MV errors No pts value from demuxer to use for frame! pts after filters MISSING I'm not a video expert and have been coming up with a lot of dead ends when Googling for this. Could someone offer some advice about how to play these videos? Here is the output of mediainfo for a sample file. mediainfo -f sec-cam01-m-20120921-212454.h264 General Count : 278 Count of stream of this kind : 1 Kind of stream : General Kind of stream : General Stream identifier : 0 Count of video streams : 1 Video_Format_List : AVC Video_Format_WithHint_List : AVC Codecs Video : AVC Complete name : sec-cam01-m-20120921-212454.h264 File name : sec-cam01-m-20120921-212454 File extension : h264 Format : AVC Format : AVC Format/Info : Advanced Video Codec Format/Url : http://developers.videolan.org/x264.html Format/Extensions usually used : avc h264 Commercial name : AVC Internet media type : video/H264 Codec : AVC Codec : AVC Codec/Info : Advanced Video Codec Codec/Url : http://developers.videolan.org/x264.html Codec/Extensions usually used : avc h264 File size : 1097315 File size : 1.05 MiB File size : 1 MiB File size : 1.0 MiB File size : 1.05 MiB File size : 1.046 MiB File last modification date : UTC 2012-09-22 01:27:12 File last modification date (local) : 2012-09-21 21:27:12 Video Count : 205 Count of stream of this kind : 1 Kind of stream : Video Kind of stream : Video Stream identifier : 0 Format : AVC Format/Info : Advanced Video Codec Format/Url : http://developers.videolan.org/x264.html Commercial name : AVC Format profile : [email protected] Format settings : 1 Ref Frames Format settings, CABAC : No Format settings, CABAC : No Format settings, ReFrames : 1 Format settings, ReFrames : 1 frame Format settings, GOP : M=1, N=3 Internet media type : video/H264 Codec : AVC Codec : AVC Codec/Family : AVC Codec/Info : Advanced Video Codec Codec/Url : http://developers.videolan.org/x264.html Codec profile : [email protected] Codec settings : 1 Ref Frames Codec settings, CABAC : No Codec_Settings_RefFrames : 1 Width : 704 Width : 704 pixels Height : 480 Height : 480 pixels Pixel aspect ratio : 1.000 Display aspect ratio : 1.467 Display aspect ratio : 3:2 Standard : NTSC Resolution : 8 Resolution : 8 bits Colorimetry : 4:2:0 Color space : YUV Chroma subsampling : 4:2:0 Bit depth : 8 Bit depth : 8 bits Scan type : Progressive Scan type : Progressive Interlacement : PPF Interlacement : Progressive Edit: Here is a sample video using the same encoding: https://www.dropbox.com/s/l5acwzy8rtqn9xe/sec-cam08-m-20121118-105815.h264 (not the same video as mediainfo output)

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