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• How can I save BioPerl sequence nested features in genbank or embl format?

  - by Ryan Thompson

  In BioPerl, a sequence object can have any number of features, and each of these can have subfeatures nested within them. For example, a feature may be a complete coding sequence of a gene, and its subfeatures might be individual exons that are concatenated to form the full coding sequence. However, when I use BioPerl to write a sequence object to a file in genbank or embl format, only the top-level features are written to the file, not the sub-features nested within the top-level features. How can I store my subfeatures in sequence files? Should I just convert all my subfeatures into top-level features, and then reconstruct the tree structure next time I read in the sequence?

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• Getting an unexpected "?" at the end of a Registry GetValue in C#

  - by Wilhelm Peraud

  Hi, I use the Registry class to manage values in the Registry on Windows Seven in C#. Registry.GetValue(...); But, I'm facing a curious behavior : Every time, the returned value is the correct one, but sometimes, it is followed by an unexpected "?" When I check the Registry, (regedit), the "?" doesn't exist. I really don't understand from where this question mark come from. Could someone help me please ? Info : - C# - 3.5 framework - windows 7 64 bits (and i want my application to work on both 32 and 64 bits systems) Thank you in advance, Wilhelm

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• How to configure WCF Service with Https WindowsAuthentication?

  - by Melania

  I am trying to figure it out how to set configurations on my service and Silverlight client App to work on Secure Windows Authentication. I have my service configured like this: <binding name="currentCustomBinding"> <binaryMessageEncoding /> <httpsTransport authenticationScheme="Ntlm" bypassProxyOnLocal="true" /> </binding> </customBinding> <serviceMetadata httpGetEnabled="False" httpsGetEnabled="True" /> <serviceDebug includeExceptionDetailInFaults="false" /> </behavior> <service name=" OperationService" behaviorConfiguration=" OperationServiceBehavior"> <endpoint address="" behaviorConfiguration=" OperationServiceBehavior" binding="customBinding" bindingConfiguration="currentCustomBinding" contract="OperationService" /> </service> Any ideas? 10q

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• In eclipse, how can I create a shortcut for an existing command that has no shortcut binding in the

  - by Visus Zhao

  In eclipse, the behavior of Ctrl+F11 is determined by preference config, and you could have either "Run last launch in history" or "Run current resource/editor" option available. But I'd like to have both of them at the same time, with an additional shortcut (e.g. Alt+F11). But eclipse doesn't provide the two commands in "key preference". Can I create a new shortcut that links to the "Run last launched" or "Run current editor"? It'd be even better if i could make a shortcut to show the launch history(the arrow beside the green little run button) Is this possible? could anyone give a quick hint on where to find resources to implement it? P.S.: Maven plugin's "Add dependency" common is another good candidate.

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• SQLite multi process access

  - by Nicolas

  Hello, We are using SQLite in a multi processes and multi threaded application. The SQLite database files are encrypted using the embedded SQLite encryption. The FAQ states that SQLite should be able to manage multi process accesses using locks mechanism. We are experiencing a strange problem: When many threads are accessing the same database file, sometime constrains violations occur, more specifically - a field with a unique constrain is getting duplicate values after calling "insert or replace" statement. It happens quite often now, that we are using the encryption. Before we started using SQLite encryption we did not notice such a behavior. Are there any specific known issues with this?

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• Stopping Windows Mobile 6.5 tab reordering

  - by PaulH

  I have a C++ Visual Studio 2008 Windows Mobile 6.5 application that uses a tab control. I've noticed that depending on how careful you are with the stylus, when using the tab control you can accidentally re-order the tabs. It's difficult to do deliberately, but it's very easy to do when you're not trying. I assume this is a new "feature" of Windows Mobile 6.5 as it doesn't happen in Windows Mobile 6.1 with the same code. Is there a window style or something I can set that will lock the tab order such that people don't accidentally re-arrange them? Also, is there an MSDN page that describes this behavior and how it is supposed to work? I've looked, but have come up empty. Thanks, PaulH

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• MKMapView not calling delegate methods

  - by criscokid

  In a UIViewController I add a MKMapView to the view controlled by the controller. - (void)viewDidLoad { [super viewDidLoad]; CGRect rect = CGRectMake(0, 0, 460, 320); map = [[MKMapView alloc] initWithFrame:rect]; map.delegate = self; [self.view addSubview:map]; } Later in the controller I have - (void)mapViewDidFinishLoadingMap:(MKMapView *)mapView { NSLog(@"done."); } Done never gets printed. None of the other delegate methods get called either like mapView:viewForAnnotation: I use a MKMapView in an another app, but this seems to happen on any new application I make. Has anyone else seen this behavior? EDIT: The problem seems to be when UIViewController is made the delegate of the MKMapView, a direct subclass of NSObject seems to work okay. I can work around like this, still seems very odd since I've done it before.

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• How to use Visual Studio debugger visualizers built against a different framework version?

  - by michielvoo

  I compiled the ExpressionTreeVisualizer project found in the Visual Studio 2010 samples but when I try to use it in a .NET 3.5 project I get the exception below: Could not load file or assembly 'file:///C:\Program Files (x86)\Microsoft\Visual Studio 2010\Common7\Packages\Debugger\Visualizers\ExpressionTreeVisualizer.dll' or one of its dependencies. This assembly is built by a runtime newer than the currently loaded runtime and cannot be loaded. The sample project had the TargetFrameworkVersion set to v4.0 and after changing it to v3.5 and building it now works in my project. I changed the source code and project file and rebuilt it so that I now have two expression tree visualizers, one for v3.5 projects and one for v4.0 projects. Is there a better way? Thanks!

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• Objective C - Constants with behaviour

  - by Akshay

  Hi, I'm new to Objective C. I am trying to define Constants which have behavior associated with them. So far I have done - @interface Direction : NSObject { NSString *displayName; } -(id)initWithDisplayName:(NSString *)aName; -(id)left; // returns West when North -(id)right; // return East when North @end @implementation Direction -(id)initWithDisplayName:(NSString *)aName { if(self = [super init]) { displayName = aName; } return self; } -(id)left {}; -(id)right {}; @end Direction* North = [Direction initWithDisplayName:@"North"]; // error - initializer element is not constant. This approach results in the indicated error. Is there a better way of doing this in Objective C.

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• How to get object properties of specific class in SPARQL

  - by udayalkonline

  hi, I have some ontology(campus.owl).There are tree classes(Student,Sport,Lecturer).Student class is joined with Lecturer class using "has" object property and Student class joined with Sport class with "isPlay" object property. problem I want to get the object property between Student and Lecturer using some SPARQL query. PREFIX rdfs: http://www.w3.org/2000/01/rdf-schema# PREFIX rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# PREFIX my: http://www.semanticweb.org/ontologies/2010/5/Ontology1275975684120.owl# SELECT ?prop WHERE { ?prop ..........??? } Any Idea..?? Thank in advance!

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• Building MobileVLCKit from git.videolan.org repository on macOsX with XCode

  - by ztepsic

  I would like to make an application for iOS(iPhone and iPad) that can play streaming videos through RTSP protocol (that includes mms). I imagined to achive a specified application using VLC player or libVLC library. On the official vlc git repository (http://git.videolan.org/?p=vlc.git;a=tree) in projects/macosx/framework/ folder there is xcode project MobileVLCKit.xcodeproj for which I assume that is a somewhat usable VLC framework for iOS. Now the problem is that I can't/don't know how to build this project. When I try to build MobileVLCKit.xcodeproj I get an error that says it can't find files inside extras/contrib/hosts/i686-apple-darwin10/ios/ folder. I have looked within that folder (extras/contrib) and managed to create folder (with files) extras/contrib/hosts/i686-apple-darwin10/ with make, but there is no ios folder. So, does anybody knows how to successfully build MobileVLCKit?

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• How do I avoid symlinks using an Ant FileSet?

  - by Will

  I have a directory tree that includes a symlink to . (the current directory). When I attempt to iterate over this using an Ant FileSet, I get the following error: Caught error while checking for symbolic links at org.apache.tools.ant.DirectoryScanner.causesIllegalSymlinkLoop(DirectoryScanner.java:1859) The code that I am using to generate the scanner is: FileSet files = new FileSet(); Project project = new Project(); project.setBasedir( dir ); files.setProject( project ); files.setDir( project.getBaseDir() ); files.getDirectoryScanner().setFollowSymlinks( false ); for( Iterator iter = files.iterator(); iter.hasNext(); ) {}

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• Override comparison for F# set

  - by Mauricio Scheffer

  Is there any way to override the comparison function in a F# set? I don't see any set construction functions that take a IComparer<T> or comparison function: Set.ofSeq et al don't take a comparison function FSharpSet(IComparer<T> comparer, SetTree<T> tree) constructor is internal, because SetTree is internal and SetTreeModule.ofSeq<a>(IComparer<a> comparer, IEnumerable<a> c) is obviously internal too. My actual problem is that I have a set of ('a * 'a) and I want a comparison such that for example (1,3) = (3,1). I know I could wrap this in a type implementing IComparable<T>, but is there any way to avoid this?

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• Weird behaviour of a deserialized class

  - by orloffm

  I've got a huge XML file that's being deserialized by XmlSerializer in an XSD-generated class structure. Everything used to work just fine, but now a weird thing started happening. Sometimes (50% of runs) a field of a certain object of a class that's deep in the class tree just changes to a certain value of the same field of a different object of the same class. It happens when entering some function, when debugger steps from opening "{" to the first line of code. I understand that it's stupid question, but maybe someone have any thoughts?

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• Why is SVN better than VSS? [closed]

  - by tsilb

  I've heard soooo many people complain about VSS, and noooo people complaining about SVN. We use SVN on my work project. It's slow, regularly freezes up my IDE, and has wonky behavior like looking for a database server every time I right-click the Solution node in my Solution Explorer. When I used VSS, everything worked beautifully, except for access restrictions which I of course blame on the people who control access. VSS is built by Microsoft and thus has great integration with Visual Studio. SVN is written by pretty much anybody with some free time (right?) and thus kinda works most of the time... And I honestly get the impression they had a dozen different directions in the design instead of one. So why do I keep hearing that SVN is better than VSS?

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• SharePoint 2010 is forcing me to safe PDF when opening from doc library

  - by Tobias Funke

  I have a document library with a PDF file. Whenever I click on the PDF file, I am prompted to save the file. I do not get the option of opening the file, I am forced to save it. What I want is for the PDF file to open, either in the browser or in a separate Adobe Reader window, depending on the Adobe Reader settings. I'm pretty sure SharePoint is responsible for this behavior, because if I put the PDF on my hard drive, then create a HTML file with a link to the file, it opens in the browser when I click on it. Please note: I looked at this question and did not help. I don't care if the PDF opens in the browser or in a separate Adobe Reader window, I just want it to open.

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• javafx 2, CSS and focus disappearing

  - by AgostinoX

  I've created a very simple CSS that styles two buttons. To the first has just been added a padding. To the second has been set the -fx-background-color, but the value is taken from caspian.css, that is the value it should have before it had been set. .first-style { -fx-padding: 20 5 1 5; } .second-style { -fx-background-color: -fx-shadow-highlight-color, -fx-outer-border, -fx-inner-border, -fx-body-color; } At this point i experience a strange behavior: the focus decoration stops working, and the second button doesn't get its blue border when focused. What's happening?

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• Blackberry pixel-specific animated focus scrolling

  - by Diego Tori

  Suppose I have a VFM full of both focusable and non-focusable fields. Since most of them are spread out far apart, the movement from one focused field to another is jerky at best, even with NullFields in between. In other words, it just sets the current y position to the next focused field without smoothly scrolling the screen. What I want to achieve is to be able to scroll at a fixed rate between fields, so it it doesn't just focus from one to another that instantaneously. After reading up on how to do this, it is a matter of overriding moveFocus and setting it via a TimerTask from an accessor method to set moveFocus, as per this link. However, I haven't seen a practical implementation of how to do this, complete with the routines that are called in the TimerTask's thread. Is there any way to achieve this type of behavior?

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• Variable declarations following if statements

  - by Anthony Pegram

  An issue came up on another forum and I knew how to fix it, but it revealed a feature of the compiler peculiar to me. The person was getting the error "Embedded statement cannot be a declaration or labeled statement" because they had a declaration of a variable following an if statement with no brackets. That was not their intent, but they had commented out the line of code immediately following the if statement, which made the variable declaration the de facto line of code to execute. Anyway, that's the background, which brings me to this. The following code is illegal if (true) int i = 7; However, if you wrap that in brackets, it's all legal. if (true) { int i - 7; } Neither piece of code is useful. Yet the second one is OK. What specifically is the explanation for this behavior? I have a hypothesis, but I'd rather ask the brilliant people on stackoverflow.

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• Can't Reorder a UITableViewCell into _some_ empty sections of a UITableView

  - by Jeremy Lightsmith

  If I have a UITableView in edit mode, w/ reordering turned on, it seems I can't move some (but not all) cells into some (but not all) empty sections. For example, if I have this layout : Section 1 apple banana Section 2 doberman Section 3 Section 4 Then I can move 'doberman' into any slot in section 1 (except after 'banana'), but I can't move it into section 3 or 4 at all. On the other hand, I can move 'apple' & 'banana' into section section 2 (except after 'doberman'), and I CAN move it into section 3, but NOT into section 4. What gives? this seems like buggy behavior. How do people work around it? Is apple aware of this bug?

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• How to get strptime to raise ArgumentError with garbage trailing characters

  - by Matt Briggs

  We have to handle user specified date formats in our application. We decided to go with Date.strptime for parsing and validation, which works great, except for how it just ignores any garbage data entered. Here is an irb session demonstrating the issue ree-1.8.7-2010.01 > require 'date' => true ree-1.8.7-2010.01 > d = Date.strptime '2001-01-01failfailfail', '%Y-%m-%d' => #<Date: 4903821/2,0,2299161> ree-1.8.7-2010.01 > d.to_s => "2001-01-01" what we would like, is behavior more like this ree-1.8.7-2010.01 > d = Date.strptime '2001failfailfail-01-01', '%Y-%m-%d' ArgumentError: invalid date Any suggestions would be appreciated

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• Visual Studio 2008 - formatting/control characters/marks

  - by AL

  Hi, I don't know what I did but somehow the IDE has started displaying a green dot whenever I press spacebar and a green arrowhead whenever I press TAB. The source has become littered with these characters all over and I am finding it very difficult to code in the presence of so many formatting marks. I have tried to search a solution on Google but couldn't perhaps enter the right keywords so haven't been able to fix the behavior. Is there any way I can stop VS2008 IDE from littering my source code with these green dots and arrowheads whenever I press spacebar/tab? I would be really thankful for this help. Thanks, -AL PS: Re-posting the question as I am new to this forum and probably couldn't see the email notification option earlier. My apologies for this inconvenience.

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• How can I render a custom view in a UIScrollView at varying zoom levels without distorting the view?

  - by eczarny

  The scenario: I have a custom view (a subclass of UIView) that draws a game board. To enable the ability to zoom into, and pan around, the board I added my view as a subview of UIScrollView. This kind of works, but the game board is being rendered incorrectly. Everything is kind of fuzzy, and nothing looks right. The question: How can I force my view to be redrawn correctly ay varying scales? I'm providing my view with the current scale and sending it a setNeedsDisplay message after the scroll view is done zooming in/out, but the game board is still being rendered incorrectly. My view should be redrawing the game board depending on the zoom level, but this isn't happening. Does the scroll view perform a generic transformation on subviews? Is there a way to disable this behavior?

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• Injecting an XML fragment into the current document from an external file

  - by makenai

  I'm currently parsing an XML file using REXML and trying to come up with a way of inserting an XML fragment from an internal file. Currently, I'm using some logic like the following: doc.elements.each('//include') do |element| handleInclude( element ) end def handleInclude( element ) if filename = element.attributes['file'] data = File.open( filename ).read doc = REXML::Document.new( data ) element.parent.replace_child( element, doc ) end end Where my XML looks like the following: <include file="test.xml" /> But this seems a little bit clunky, and I'm worried that REXML might not always parse XML fragments correctly due to absence of a proper root node in some cases. Is there a better way of doing this? Concern #2: REXML seems not to pick up my changes after I replace elements. For example, after making a change: doc.elements.each('rootNode/*') do |element| end ..picks up neither the original element I replaced, nor the one I replaced it with. Is there some trick to getting REXML to rescan its' tree?

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• Colouring JTree's TreeNodes

  - by Amadan

  I have a JTree which I give objects that implement the TreeNode interface, and a custom TreeModel to display them (not using DefaultMutableTreeNode). I would like to change the text colour of some nodes. I can't find anything in the docs, except javax.swing.tree.DefaultTreeCellRenderer.setTextNonSelectionColor(Color newColor), but it will change everything indiscriminately, and I only need it for some nodes (specifically, broken links, i.e. nodes whose corresponding files can't be found on the disk, should be greyed out, the rest should be default). Can it be done, and how?

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