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  • breadth-first traversal of directory tree is not lazy

    - by user855443
    I try to traverse the diretory tree. A naive depth-first traversal seems not to produce the data in a lazy fashion and runs out of memory. I next tried a breadth first approach, which shows the same problem - it uses all the memory available and then crashes. the code i have is: getFilePathBreadtFirst :: FilePath -> IO [FilePath] getFilePathBreadtFirst fp = do fileinfo <- getInfo fp res :: [FilePath] <- if isReadableDirectory fileinfo then do children <- getChildren fp lower <- mapM getFilePathBreadtFirst children return (children ++ concat lower) return (children ++ concat () else return [fp] -- should only return the files? return res getChildren :: FilePath -> IO [FilePath] getChildren path = do names <- getUsefulContents path let namesfull = map (path </>) names return namesfull testBF fn = do -- crashes for /home/frank, does not go to swap fps <- getFilePathBreadtFirst fn putStrLn $ unlines fps I think all the code is either linear or tail recursive, and I would expect that the listing of filenames starts immediately, but in fact it does not. Where is the error in my code and my thinking? where have I lost lazy evaluation?

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  • Nested Resource testing RSpec

    - by Joseph DelCioppio
    I have two models: class Solution < ActiveRecord::Base belongs_to :owner, :class_name => "User", :foreign_key => :user_id end class User < ActiveRecord::Base has_many :solutions end with the following routing: map.resources :users, :has_many => :solutions and here is the SolutionsController: class SolutionsController < ApplicationController before_filter :load_user def index @solutions = @user.solutions end private def load_user @user = User.find(params[:user_id]) unless params[:user_id].nil? end end Can anybody help me with writing a test for the index action? So far I have tried the following but it doesn't work: describe SolutionsController do before(:each) do @user = Factory.create(:user) @solutions = 7.times{Factory.build(:solution, :owner => @user)} @user.stub!(:solutions).and_return(@solutions) end it "should find all of the solutions owned by a user" do @user.should_receive(:solutions) get :index, :user_id => @user.id end end And I get the following error: Spec::Mocks::MockExpectationError in 'SolutionsController GET index, when the user owns the software he is viewing should find all of the solutions owned by a user' #<User:0x000000041c53e0> expected :solutions with (any args) once, but received it 0 times Thanks in advance for all the help. Joe

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  • WCF data services (OData), query with inheritance limitation?

    - by Mathieu Hétu
    Project: WCF Data service using internally EF4 CTP5 Code-First approach. I configured entities with inheritance (TPH). See previous question on this topic: Previous question about multiple entities- same table The mapping works well, and unit test over EF4 confirms that queries runs smoothly. My entities looks like this: ContactBase (abstract) Customer (inherits from ContactBase), this entity has also several Navigation properties toward other entities Resource (inherits from ContactBase) I have configured a discriminator, so both Customer and Resource map to the same table. Again, everythings works fine on the Ef4 point of view (unit tests all greens!) However, when exposing this DBContext over WCF Data services, I get: - CustomerBases sets exposed (Customers and Resources sets seems hidden, is it by design?) - When I query over Odata on Customers, I get this error: Navigation Properties are not supported on derived entity types. Entity Set 'ContactBases' has a instance of type 'CodeFirstNamespace.Customer', which is an derived entity type and has navigation properties. Please remove all the navigation properties from type 'CodeFirstNamespace.Customer'. Stacktrace: at System.Data.Services.Serializers.SyndicationSerializer.WriteObjectProperties(IExpandedResult expanded, Object customObject, ResourceType resourceType, Uri absoluteUri, String relativeUri, SyndicationItem item, DictionaryContent content, EpmSourcePathSegment currentSourceRoot) at System.Data.Services.Serializers.SyndicationSerializer.WriteEntryElement(IExpandedResult expanded, Object element, ResourceType expectedType, Uri absoluteUri, String relativeUri, SyndicationItem target) at System.Data.Services.Serializers.SyndicationSerializer.<DeferredFeedItems>d__b.MoveNext() at System.ServiceModel.Syndication.Atom10FeedFormatter.WriteItems(XmlWriter writer, IEnumerable`1 items, Uri feedBaseUri) at System.ServiceModel.Syndication.Atom10FeedFormatter.WriteFeedTo(XmlWriter writer, SyndicationFeed feed, Boolean isSourceFeed) at System.ServiceModel.Syndication.Atom10FeedFormatter.WriteFeed(XmlWriter writer) at System.ServiceModel.Syndication.Atom10FeedFormatter.WriteTo(XmlWriter writer) at System.Data.Services.Serializers.SyndicationSerializer.WriteTopLevelElements(IExpandedResult expanded, IEnumerator elements, Boolean hasMoved) at System.Data.Services.Serializers.Serializer.WriteRequest(IEnumerator queryResults, Boolean hasMoved) at System.Data.Services.ResponseBodyWriter.Write(Stream stream) Seems like a limitation of WCF Data services... is it? Not much documentation can be found on the web about WCF Data services (OData) and inheritance specifications. How can I overpass this exception? I need these navigation properties on derived entities, and inheritance seems the only way to provide mapping of 2 entites on the same table with Ef4 CTP5... Any thoughts?

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  • CompositionHost.Initialize() can not execute twice.

    - by Khoa
    I am currently try to integrate MEF and PRISM to work with each other. Everything is working fine so far. Now i would like to use MEF runtime module discovery (DeploymentCatalog) which will be used to download XAPs from server directory and then plug it into one of the Region inside my MAIN UI. I am using UnityBootStrapper and inside this class i also integrated MEF container. This sample application is based on Glenn Block (http://codebetter.com/glennblock/2010/01/03/mef-and-prism-exploration-mef-module-loading/). The following code is used to initialize CompositionContainer inside my Bootstrapper: // This is the host catalog which contains all parts of running assembly. var catalog = GetHostCatalog(); // Create MEF container which initial catalog var container = new CompositionContainer(catalog); // here we explicitly map a part to make it available on imports elsewhere, using // Unity to resolve the export so dependencies are resolved // We do this because region manager is third-party ... therefore, we need to // export explicitly because the implementation doesn't have its own [export] tag container.ComposeExportedValue<IRegionManager>(Container.Resolve<IRegionManager>()); container.ComposeExportedValue<IEventAggregator>(Container.Resolve<IEventAggregator>()); // Obtain CatalogService as a singleton // All dynamic modules will use this service to add its parts. Container.RegisterInstance<ICatalogService>(new CatalogService(catalog)); // Initialize the container CompositionHost.Initialize(container); Now i have another class called DeploymentCatalogService which is used to download the XAP from server. The current problem i am facing is that inside DeploymentCatalogService Initialize method, CompositionHost container is try to initialize its container with aggregateCatalog again. _aggregateCatalog = new AggregateCatalog(); _aggregateCatalog.Catalogs.Add(new DeploymentCatalog()); CompositionHost.Initialize(_aggregateCatalog); This causes an Exception which stated that The container has already been initialized. Is there a way to use the existing container and update it with the new aggregateCatalog? Hope this is not too confusing. Please be nice i am still new to MEF. Cheers,

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  • How to determine a text block of a file in one version come from which file in the previous version?

    - by Muhammad Asaduzzaman
    The problem is described below: Suppose I have a list of files in one version(say A,B,C,D). In the next version I have the following files(A,E,F,G). There are some similarities in their contents. The files in the later version comes from the previous version by file name renaming, content addition, deletion or partial modification or without any change( for example A is not changed). I take a block of text from a file(E, 2nd version) and check which files(in the 1st version) contain this text block. I found that B,C and D contain the text fragment. I want to determine from which file(B or c or d) this text block actually comes from.(I assume that E is a file whose name change in the second version). Since the contents may be changed, added or deleted in the later version, so in order to determine similarity I use LCS algorithm. But I cannot map the file with its previous version. I think one possible approach might be to use the location information of the match text blocks. But this heuristics not always work. Is there any research or algorithm exist to find so. Any direction will be helpful. Thanks in advance.

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  • Creating Actions from UIActionSheets help

    - by user337174
    I am using two UIAction sheets within my current project. I can get one to work perfectly fine but when i insert a second action sheet it runs the same arguements as the first. How do i define the actionsheets seperatly? -(IBAction) phoneButtonClicked:(id)sender { // open a dialog with just an OK button UIActionSheet *actionSheet = [[UIActionSheet alloc] initWithTitle:nil delegate:self cancelButtonTitle:@"Cancel" destructiveButtonTitle:nil otherButtonTitles:[NSString stringWithFormat:@"Phone: %@",phone],nil]; actionSheet.actionSheetStyle = UIActionSheetStyleDefault; [actionSheet showInView:self.view]; // show from our table view (pops up in the middle of the table) [actionSheet release]; } -(IBAction) mapButtonClicked:(id)sender { // open a dialog with just an OK button UIActionSheet *mapActionSheet = [[UIActionSheet alloc] initWithTitle:nil delegate:self cancelButtonTitle:@"Cancel" destructiveButtonTitle:nil otherButtonTitles:[NSString stringWithFormat:@"Map"],nil]; mapActionSheet.actionSheetStyle = UIActionSheetStyleDefault; [mapActionSheet showInView:self.view]; // show from our table view (pops up in the middle of the table) [mapActionSheet release]; } -(void)actionSheet:(UIActionSheet *)actionSheet clickedButtonAtIndex:(NSInteger)buttonIndex { if(buttonIndex == 0){ NSString *callPhone = [NSString stringWithFormat:@"tel:%@",phone]; NSLog(@"Calling: %@", callPhone); [[UIApplication sharedApplication] openURL:[NSURL URLWithString:callPhone]]; } }

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  • Best way to migrate export/import from SQL Server to oracle

    - by matao
    Hi guys! I'm faced with needing access for reporting to some data that lives in Oracle and other data that lives in a SQL Server 2000 database. For various reasons these live on different sides of a firewall. Now we're looking at doing an export/import from sql server to oracle and I'd like some advice on the best way to go about it... The procedure will need to be fully automated and run nightly, so that excludes using the SQL developer tools. I also can't make a live link between databases from our (oracle) side as the firewall is in the way. The data needs to be transformed in the process from a star schema to a de-normalised table ready for reporting. What I'm thinking about is writing a monster query for SQL Server (which I mostly have already) that will denormalise and read out the data from SQL Server into a flat file using the sql server equivalent of sqlplus as a scheduled task, dump into a Well Known Location, then on the oracle side have a cron job that copies down the file and loads it with sql loader and rebuilds indexes etc. This is all doable, but very manual. Is there one or a combination of FOSS or standard oracle/SQL Server tools that could automate this for me? the Irreducible complexity is the query on one side and building indexes on the other, but I would love to not have to write the CSV dumping detail or the SQL loader script, just say dump this view out to CSV on one side, and on the other truncate and insert into this table from CSV and not worry about mapping column names and all other arcane sqlldr voodoo... best practices? thoughts? comments? edit: I have about 50+ columns all of varying types and lengths in my dataset, which is why I'd prefer to not have to write out how to generate and map each single column...

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  • C++. How to define template parameter of type T for class A when class T needs a type A template parameter?

    - by jaybny
    Executor class has template of type P and it takes a P object in constructor. Algo class has a template E and also has a static variable of type E. Processor class has template T and a collection of Ts. Question how can I define Executor< Processor<Algo> > and Algo<Executor> ? Is this possible? I see no way to defining this, its kind of an "infinite recursive template argument" See code. template <class T> class Processor { map<string,T> ts; void Process(string str, int i) { ts[str].Do(i); } } template <class P> class Executor { Proc &p; Executor(P &p) : Proc(p) {} void Foo(string str, int i) { p.Process(str,i); } Execute(string str) { } } template <class E> class Algo { static E e; void Do(int i) {} void Foo() { e.Execute("xxx"); } } main () { typedef Processor<Algo> PALGO; // invalid typedef Executor<PALGO> EPALGO; typedef Algo<EPALGO> AEPALGO; Executor<PALGO> executor(PALGO()); AEPALGO::E = executor; }

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  • Parse large XML file w/ script or use BioPython API ?

    - by jeremy04
    Hey guys this is my first question on here. I'm trying to make a local copy of the UniprotKB in SQL. The UniprotKB is 2.1GB, and it comes in XML and a special text format used by SwissProt Here are my options: 1) Use a SAX parser (XML) - I chose Ruby, and Nokogiri. I started writing the parser, but my initial reaction: how would I map the XML schema to the SAX parser? 2) BioPython - I already have BioSQL/Biopython installed, which literally created my SQL schema for me, and I was able to successfully insert one SwissProt/Uniprot txt file into the database. I'm running it right now (crosses fingers) on the entire 2.1gb. Here is the code I'm running: from Bio import SeqIO from BioSQL import BioSeqDatabase from Bio import SwissProt server = BioSeqDatabase.open_database(driver = "MySQLdb", user = "root", passwd = "", host="localhost", db = "bioseqdb") db = server["uniprot"] iterator = SeqIO.parse(open("/path/to/uniprot_sprot.dat", "r"), "swiss") db.load(iterator) server.commit() Edit: it's now crashing because the transactions are getting locked (since the tables are Innodb) Error Number: 1205 Lock wait timeout exceeded; try restarting transaction. I'm using MySQL version: 5.1.43 Should I switch my database to Postgrelsql ?

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  • How do you use stl's functions like for_each?

    - by thomas-gies
    I started using stl containers because they came in very handy when I needed functionality of a list, set and map and had nothing else available in my programming environment. I did not care much about the ideas behind it. STL documentations were only interesting up to the point where it came to functions, etc. Then I skipped reading and just used the containers. But yesterday, still being relaxed from my holidays, I just gave it a try and wanted to go a bit more the stl way. So I used the transform function (can I have a little bit of applause for me, thank you). From an academic point of view it really looked interesting and it worked. But the thing that boroughs me is that if you intensify the use of those functions, you need 10ks of helper classes for mostly everything you want to do in your code. The hole logic of the program is sliced in tiny pieces. This slicing is not the result of god coding habits. It's just a technical need. Something, that makes my life probably harder not easier. And I learned the hard way, that you should always choose the simplest approach that solves the problem at hand. And I can't see what, for example, the for_each function is doing for me that justifies the use of a helper class over several simple lines of code that sit inside a normal loop so that everybody can see what is going on. I would like to know, what you are thinking about my concerns? Did you see it like I do when you started working this way and have changed your mind when you got used to it? Are there benefits that I overlooked? Or do you just ignore this stuff as I did (and will go an doing it, probably). Thanks. PS: I know that there is a real for_each loop in boost. But I ignore it here since it is just a convenient way for my usual loops with iterators I guess.

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  • Java Applet - ArrayIndexOutOfBoundsException (pt 2)

    - by Dan
    Hi there, I fixed my previous problem. But now when on my tile map... if I try to go 9 tiles to the RIGHT, and on trying to get to the 9th tile.... I will get this error: Exception in thread "AWT-EventQueue-1" java.lang.ArrayIndexOutOfBoundsException: 8 at tileGen.blocked(tileGen.java:125) at tileGen.keyPressed(tileGen.java:58) at java.awt.Component.processKeyEvent(Component.java:6221) at java.awt.Component.processEvent(Component.java:6040) at java.awt.Container.processEvent(Container.java:2041) at java.awt.Component.dispatchEventImpl(Component.java:4630) at java.awt.Container.dispatchEventImpl(Container.java:2099) at java.awt.Component.dispatchEvent(Component.java:4460) at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850) at java.awt.DefaultKeyboardFocusManager.dispatchKeyEvent(DefaultKeyboardFocusManager.java:712) at java.awt.DefaultKeyboardFocusManager.preDispatchKeyEvent(DefaultKeyboardFocusManager.java:990) at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:855) at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:676) at java.awt.Component.dispatchEventImpl(Component.java:4502) at java.awt.Container.dispatchEventImpl(Container.java:2099) at java.awt.Component.dispatchEvent(Component.java:4460) at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) Here is code: http://www.so.pastebin.com/hYkpQf13 I have tried many solutions, all of which have failed. Maybe someone here can I help me? Thank you.

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  • Mapkit +closest annotation

    - by danskcollignon
    Hi all, I am trying to devellopp an app showing the nearest poi to the users location. My app is now capable of: showing a map (Mapkit) with 110 annotations and the user's location. Furthermore, I have a TableView at the bottom of my screen, to choose between the different annotations. However, they're listed by number, and not by proximity to the user's location, which is my wish. My research have led me to think that I should use CLLocation for getting the user's location. I then have really no idea on how to do it next, using getDistancefrom. My annotations are stored on SecondViewController.m, using this form: -(void)loadOurAnnotations { CLLocationCoordinate2D workingCoordinate; workingCoordinate.latitude = XX.XXXXX; workingCoordinate.longitude = XX.XXXXX; SecondViewAnnotation *POI1 = [[SecondViewAnnotation alloc] initWithCoordinate:workingCoordinate]; [POI1 setTitle:@"POI"]; [POI1 setSubtitle:@"StreetName"]; [POI1 setAnnotationType:SecondViewAnnotationTypePOI1]; [mapView addAnnotation:POI1]; , and so on to POI110. Could someone please give me a clue? I'm a total newbie! Thank you in advance for your help,

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  • How to systematically generate images from data?

    - by adamvickers
    I work for a performing arts nonprofit. We have seating charts for each of the theaters we work with; each seating chart shows the number of sections, the shape of each section, and the number of rows in each section. We'd like to create dynamic seating charts based on this info. We'd like them to look/feel kinda like this: http://www.fansnap.com/tickets/177754-on. But the tricky part is we'd like to be able to store all the info about each theater (the section names, shape/size of each section, and number of rows in each section) as data and then build a system that reads this data and uses it to create a dynamic map. I'm a life-long web developer, but I don't have have any experience with a difficult graphics problem like this. I realize it's a complex problem and I don't expect anyone to give me a complete answer here, but I would love direction on where I should be looking for more info. Is what I'm describing possible? Does this sort of technique have a name? Where can I learn more about how to accomplish this? What software should I use? Any info would be helpful.

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  • How to Alphabetize a CSS file in Vim

    - by Kev
    I get a CSS file: div#header h1 { z-index: 101; color: #000; position: relative; line-height: 24px; margin-right: 48px; border-bottom: 1px solid #dedede; font-size: 18px; } div#header h2 { z-index: 101; color: #000; position: relative; line-height: 24px; margin-right: 48px; border-bottom: 1px solid #dedede; font-size: 18px; } I want to Alphabetize lines between the {...} div#header h1 { border-bottom: 1px solid #dedede; color: #000; font-size: 18px; line-height: 24px; margin-right: 48px; position: relative; z-index: 101; } div#header h2 { border-bottom: 1px solid #dedede; color: #000; font-size: 18px; line-height: 24px; margin-right: 48px; position: relative; z-index: 101; } I map F7 to do it nmap <F7> /{/+1<CR>vi{:sort<CR> But I need to press F7 over and over again to get the work done. If the CSS file is big, It's time-consuming & easily get bored. I want to get the cmds piped. So that, I only press F7 once! Any idea? thanks!

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  • ASP.NET MVC - hiding id in URL?

    - by mcfroob
    I'm building a basic blog application just now, for viewing data I'm just using the default route, i.e. - routes.MapRoute ( "Default", // Route name "{controller}/{action}/{id}", new { controller = "Blog", action = "Index", id = UrlParameter.Optional } ); So that when you go to mysite.com/View/12 it displays the blog with id 12. I want to modify the URLs so that they look as follows: mysite.com/View/2010/06/01/this-is-the-title. I could have a URL mapping like - routes.MapRoute( "View", "View/{year}/{month}/{day}/{title}", new { controller = "Blog", action = "View" } ); But then I'm not passing the ID into the Controller action so I would have to search on the date and title which doesn't feel right. On the other hand, if I pass the ID in it will show up in the URL which isn't what I'm aiming for either. Is there any way to redirect to the URL I want in the controller action after passing only the ID in as a paramter, or to pass the ID into the a Map Route but hide it in the URL? Thanks for your help!

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  • Consistent HashCode() and Equals() results, but inconsistent TreeMap.containsKey() result

    - by smessing
    I have the following object Node: private class Node implements Comparable<Node>(){ private String guid(); ... public boolean equals(Node o){ return (this == o); } public int hashCode(){ return guid.hashCode(); } ... } And I use it in the following TreeMap: TreeMap<Node, TreeSet<Edge>> nodes = new TreeMap<Node, TreeSet<Edge>>(); Now, the tree map is used in a class called Graph to store nodes currently in the graph, along with a set of their edges (from the class Edge). My problem is when I try to execute: public containsNode(n){ for (Node x : nodes.keySet()) { System.out.println("HASH CODE: "); System.out.print(x.hashCode() == n.hashCode()); System.out.println("EQUALS: "); System.out.print(x.equals(n)); System.out.println("CONTAINS: "); System.out.print(nodes.containsKey(n)); System.out.println("N: " + n); System.out.println("X: " + x); } } I sometimes get the following: HASHCODE: true EQUALS: true CONTAINS: false N: foo X: foo Anyone have an idea as to what I'm doing wrong? I'm still new to all this, so I apologize in advance if I'm overlooking something simple (I know hashCode() doesn't really matter for TreeMap, but I figured I'd include it).

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  • ZF2 - How to use the Hydrator/exchangeArray() to populate a nested object

    - by Dominic Watson
    I've got an object with values that are stored in my database. My object also contains another object which is stored in the database using just the ID of it (foreign key). http://framework.zend.com/manual/2.0/en/modules/zend.stdlib.hydrator.html Before the Hydrator/exchangeArray functionality in ZF2 you would use a Mapper to grab everything you need to create the object. Now I'm trying to eliminate this extra layer by just using Hydration/exchangeArray to populate my objects but am a bit stuck on creating the nested object. Should my entity have the Inner object's table injected into it so I can create it if the ID of it is passed to my 'exchangeArray' ? Here are example entities as an example. // Village id, name, position, square_id // Map Square id, name, type Upon sending square_id to my Village's exchangeArray() function. It would get the mapTable and use hydrator to pull in the square using the ID I have. It doesn't seem right to be to have mapper instances inside my entity as I thought they should be disconnected from anything but it's own entity specific parameters and functionality?

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  • problem with two key ranges in couchdb

    - by Duasto
    I'm having problem getting the right results in my coordinate system. To explain my system, I have this simple database that have x_axis, y_axis and name columns. I don't need to get all the data, I just need to display some part of it. For example, I have a coordinate system that have 10:10(meaning from x_axis -10 to 10 and from y_axis -10 to 10) and I want to display only 49 coordinates. In sql query I can do it something like this: "select * from coordinate where x_axis = -3 and x_axis <= 3 and y_axis = -3 y_axis <= 3" I tried this function but no success: "by_range": { "map": "function(doc) { emit([doc.x_axis, doc.y_axis], doc) }" } by_range?startkey=[-3,-3]&endkey=[3,3] I got a wrong results of: -3x-3 -3x-2 -3x-1 -3x0 -3x1 -3x2 -3x3 <-- should not display this part -- -3x4 -3x5 -3x6 -3x7 -3x8 -3x9 -3x10 <-- end of should not display this part -- ..... up to 3x3 to give you a better understanding of my project here is the screenshot of that I want to be made: Oops they don't allowed new poster to post an image img96(dot)imageshack(dot)us/img96/5382/coordinates(dot)jpg <<< just change the "(dot)" to "."

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  • I need help on this data file to be edited in SOM_PAK format

    - by Mola
    Hi Experts, I am working on Self Organizing Map (SOM) Implementation and i have a microarray dataset which i am trying to read in using some_read_data function, but i keep having an errors when i edit it to have it in SOM_PAK form which is recognise by SOM for reading such as ??? Error using == somtoolbox\som_read_data.m Only 69 vector components on input file data line 1 (dimension is 70) Error in == SomMainFunction at 3 sD = som_read_data('B_r2.txt'); but when i try to read the data without editing which is the original file as shown here: http://rapidshare.com/files/376239367/DLBCL.txt.html It indicates "Data read OK", but i have the following error ??? Error using == unknown Out of memory. Type HELP MEMORY for your options. Error in == somtoolbox\som_bmus.m at 189 Bmus = zeros(dlen,length(which_bmus)); Error in == somvis\somvis_p_matrix.m at 41 [dummy dists] = som_bmus (dat, dat, 2:datlen); Error in == SomMainFunction at 16 [pheight rad_real perc] = somvis_p_matrix(sM,sD); You can get the datafile from here:http://rapidshare.com/files/376239367/DLBCL.txt.html I need someone to help me correct this data for me and put it in SOM_PAK format. I have tried getting it in SOM_PAK format, but it still giving me errors:

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  • Could I do this blind relative to absolute path conversion (for perforce depot paths) better?

    - by wonderfulthunk
    I need to "blindly" (i.e. without access to the filesystem, in this case the source control server) convert some relative paths to absolute paths. So I'm playing with dotdots and indices. For those that are curious I have a log file produced by someone else's tool that sometimes outputs relative paths, and for performance reasons I don't want to access the source control server where the paths are located to check if they're valid and more easily convert them to their absolute path equivalents. I've gone through a number of (probably foolish) iterations trying to get it to work - mostly a few variations of iterating over the array of folders and trying delete_at(index) and delete_at(index-1) but my index kept incrementing while I was deleting elements of the array out from under myself, which didn't work for cases with multiple dotdots. Any tips on improving it in general or specifically the lack of non-consecutive dotdot support would be welcome. Currently this is working with my limited examples, but I think it could be improved. It can't handle non-consecutive '..' directories, and I am probably doing a lot of wasteful (and error-prone) things that I probably don't need to do because I'm a bit of a hack. I've found a lot of examples of converting other types of relative paths using other languages, but none of them seemed to fit my situation. These are my example paths that I need to convert, from: //depot/foo/../bar/single.c //depot/foo/docs/../../other/double.c //depot/foo/usr/bin/../../../else/more/triple.c to: //depot/bar/single.c //depot/other/double.c //depot/else/more/triple.c And my script: begin paths = File.open(ARGV[0]).readlines puts(paths) new_paths = Array.new paths.each { |path| folders = path.split('/') if ( folders.include?('..') ) num_dotdots = 0 first_dotdot = folders.index('..') last_dotdot = folders.rindex('..') folders.each { |item| if ( item == '..' ) num_dotdots += 1 end } if ( first_dotdot and ( num_dotdots > 0 ) ) # this might be redundant? folders.slice!(first_dotdot - num_dotdots..last_dotdot) # dependent on consecutive dotdots only end end folders.map! { |elem| if ( elem !~ /\n/ ) elem = elem + '/' else elem = elem end } new_paths << folders.to_s } puts(new_paths) end

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  • Strategies for dealing with Circular references caused by JPA relationships?

    - by ams
    I am trying to partition my application into modules by features packaged into separate jars such as feature-a.jar, feature-b.jar, ... etc. Individual feature jars such as feature-a.jar should contain all the code for a feature a including jpa entities, business logic, rest apis, unit tests, integration test ... etc. The problem I am running into is that bi-directional relationships between JPA entities cause circular references between the jar files. For example Customer entity should be in customer.jar and the Order should be in order.jar but Customer references order and order references customer making it hard to split them into separate jars / eclipse projects. Options I see for dealing with the circular dependencies in JPA entities: Option 1: Put all the entities into one jar / one project Option 2: Don't map certain bi-directianl relationships to avoid circular dependencies across projects. Questions: What rules / principles have you used to decide when to do bi-directional mapping vs. not? Have you been able to break jpa entities into their own projects / jar by features if so how did you avoid the circular dependencies issues?

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  • Super inplace controls in_place_select displays incorrectly

    - by Magicked
    I'm using the super_inplace_controls plugin to allow users to edit fields on the "show" page. However, I'm running into an issue with the in_place_select function. Here is my view: <p> <b>Status:</b> <%= in_place_select :incident, :incident_status, :choices => @statuses.map { |e| [e.name, e.id] } %> </p> This is in the 'Incident' view. IncidentStatus is a separate table that has_many Incidents. In the Incident controller, I retrieve @statuses like so: @statuses = IncidentStatus.find(:all) Everything works fine for the in_place_select, except the original display. In my browser, it shows: Status: #<IncidentStatus:0x1033147d8> Which means it's not grabbing the current incident_status.name, but it's just changing the object to a string. I'm not sure how to fix this! When I click on the "IncidentStatus:0x1033147d8", everything works properly and I can select the proper fields. Thanks for any help!

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  • Message Handlers and the WeakReference issue

    - by user1058647
    The following message Handler works fine receiving messages from my service... private Handler handler = new Handler() { public void handleMessage(Message message) { Object path = message.obj; if (message.arg1 == 5 && path != null) //5 means its a single mapleg to plot on the map { String myString = (String) message.obj; Gson gson = new Gson(); MapPlot mapleg = gson.fromJson(myString, MapPlot.class); myMapView.getOverlays().add(new DirectionPathOverlay(mapleg.fromPoint, mapleg.toPoint)); mc.animateTo(mapleg.toPoint); } else { if (message.arg1 == RESULT_OK && path != null) { Toast.makeText(PSActivity.this, "Service Started" + path.toString(), Toast.LENGTH_LONG).show(); } else { Toast.makeText(PSActivity.this,"Service error" + String.valueOf(message.arg1), Toast.LENGTH_LONG).show(); } } }; }; However, even though it tests out alright in the AVD (I'm feeding it a large KML file via DDMS) the "object path = message.obj;" line has a WARNING saying "this Handler class should be static else leaks might occur". But if I say "static Handler handler = new Handler()" it won't compile complaining that I "cannot make a static reference to a non-static field myMapView. If I can't make such references, I can't do anything useful. This led me into several hours of googling around on this issue and learning more about weakReferences than I ever wanted to know. The often found reccomendation I find is that I should replace... private Handler handler = new Handler() with static class handler extends Handler { private final WeakReference<PSActivity> mTarget; handler(PSActivity target) { mTarget = new WeakReference<PSActivity>(target); } But this won't compile still complaining that I can't make a static reference to a non-dtatic field. So, my question a week or to ago was "how can I write a message handler for android so my service can send data to my activity. Even though I have working code, the question still stands with the suffix "without leaking memory". Thanks, Gary

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  • Using EhCache for session.createCriteria(...).list()

    - by James Smith
    I'm benchmarking the performance gains from using a 2nd level cache in Hibernate (enabling EhCache), but it doesn't seem to improve performance. In fact, the time to perform the query slightly increases. The query is: session.createCriteria(MyEntity.class).list(); The entity is: @Entity @Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE) public class MyEntity { @Id @GeneratedValue private long id; @Column(length=5000) private String data; //---SNIP getters and setters--- } My hibernate.cfg.xml is: <!-- all the normal stuff to get it to connect & map the entities plus:--> <property name="hibernate.cache.region.factory_class"> net.sf.ehcache.hibernate.EhCacheRegionFactory </property> The MyEntity table contains about 2000 rows. The problem is that before adding in the cache, the query above to list all entities took an average of 65 ms. After the cache, they take an average of 74 ms. Is there something I'm missing? Is there something extra that needs to be done that will increase performance?

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  • While loop in foreach loop not looping correctly

    - by tominated
    I'm trying to make a very basic php ORM as for a school project. I have got almost everything working, but I'm trying to map results to an array. Here's a snippet of code to hopefully assist my explanation. $results = array(); foreach($this->columns as $column){ $current = array(); while($row = mysql_fetch_array($this->results)){ $current[] = $row[$column]; print_r($current); echo '<br><br>'; } $results[$column] = $current; } print_r($results); return mysql_fetch_array($this->results); This works, but the while loop only works on the first column. The print_r($results); shows the following: Array ( [testID] => Array ( [0] => 1 [1] => 2 ) [testName] => Array ( ) [testData] => Array ( ) ) Can anybody shed some light? Thanks in advance!

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