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  • How to determine a text block of a file in one version come from which file in the previous version?

    - by Muhammad Asaduzzaman
    The problem is described below: Suppose I have a list of files in one version(say A,B,C,D). In the next version I have the following files(A,E,F,G). There are some similarities in their contents. The files in the later version comes from the previous version by file name renaming, content addition, deletion or partial modification or without any change( for example A is not changed). I take a block of text from a file(E, 2nd version) and check which files(in the 1st version) contain this text block. I found that B,C and D contain the text fragment. I want to determine from which file(B or c or d) this text block actually comes from.(I assume that E is a file whose name change in the second version). Since the contents may be changed, added or deleted in the later version, so in order to determine similarity I use LCS algorithm. But I cannot map the file with its previous version. I think one possible approach might be to use the location information of the match text blocks. But this heuristics not always work. Is there any research or algorithm exist to find so. Any direction will be helpful. Thanks in advance.

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  • Hibernate mapping Problem

    - by Geln Yang
    Hi, There is a table Item like, code,name 01,parent1 02,parent2 0101,child11 0102,child12 0201,child21 0202,child22 Create a java object and hbm xml to map the table.The Item.parent is a Item whose code is equal to the first two characters of its code : class Item{ String code; String name; Item parent; List<Item> children; .... setter/getter.... } <hibernate-mapping> <class name="Item" table="Item"> <id name="code" length="4" type="string"> <generator class="assigned" /> </id> <property name="name" column="name" length="50" not-null="true" /> <many-to-one name="parent" class="Item" not-found="ignore"> <formula> <![CDATA[ (select i.code,r.name from Item i where (case length(code) when 4 then i.code=SUBSTRING(code,1,2) else false end)) ]]> </formula> </many-to-one> <bag name="children"></bag> </class> </hibernate-mapping> I try to use formula to define the many-to-one relationship,but it doesn't work!Is there something wrong?Or is there other method? Thanks! ps,I use mysql database.

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  • Project euler problem 3 in haskell

    - by shk
    I'm new in Haskell and try to solve 3 problem from http://projecteuler.net/. The prime factors of 13195 are 5, 7, 13 and 29. What is the largest prime factor of the number 600851475143 ? My solution: import Data.List getD :: Int -> Int getD x = -- find deviders let deriveList = filter (\y -> (x `mod` y) == 0) [1 .. x] filteredList = filter isSimpleNumber deriveList in maximum filteredList -- Check is nmber simple isSimpleNumber :: Int -> Bool isSimpleNumber x = let deriveList = map (\y -> (x `mod` y)) [1 .. x] filterLength = length ( filter (\z -> z == 0) deriveList) in case filterLength of 2 -> True _ -> False I try to run for example: getD 13195 > 29 But when i try: getD 600851475143 I get error Exception: Prelude.maximum: empty list Why? Thank you @Barry Brown, I think i must use: getD :: Integer -> Integer But i get error: Couldn't match expected type `Int' with actual type `Integer' Expected type: [Int] Actual type: [Integer] In the second argument of `filter', namely `deriveList' In the expression: filter isSimpleNumber deriveList Thank you.

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  • How to Alphabetize a CSS file in Vim

    - by Kev
    I get a CSS file: div#header h1 { z-index: 101; color: #000; position: relative; line-height: 24px; margin-right: 48px; border-bottom: 1px solid #dedede; font-size: 18px; } div#header h2 { z-index: 101; color: #000; position: relative; line-height: 24px; margin-right: 48px; border-bottom: 1px solid #dedede; font-size: 18px; } I want to Alphabetize lines between the {...} div#header h1 { border-bottom: 1px solid #dedede; color: #000; font-size: 18px; line-height: 24px; margin-right: 48px; position: relative; z-index: 101; } div#header h2 { border-bottom: 1px solid #dedede; color: #000; font-size: 18px; line-height: 24px; margin-right: 48px; position: relative; z-index: 101; } I map F7 to do it nmap <F7> /{/+1<CR>vi{:sort<CR> But I need to press F7 over and over again to get the work done. If the CSS file is big, It's time-consuming & easily get bored. I want to get the cmds piped. So that, I only press F7 once! Any idea? thanks!

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  • Google MapView doesn't work after signed the app.

    - by user164589
    Hi guys, I am facing to android application signing problem. My application contains Google MapView. When I compile the app and run on the emulator, MapView works fine. But signed the app, MapView doesn't work. I've get Google Map API. This works on the simulator. I could sign the app once 2 months ago. Then I've upgraded the app. Now I need to sign the app again. Actually I don't know why signed app's mapView doesn't work. How to fix it ? Please advice. I used following steps when sign the app: Run Eclipse. Select the project. Right Click - Android Tools - Export Signed Application Package - Then Filled forms. (In forms, Validity years: 200, and all passwords are same.) Can you suggest me ? Thanks in advance.

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  • How do you use stl's functions like for_each?

    - by thomas-gies
    I started using stl containers because they came in very handy when I needed functionality of a list, set and map and had nothing else available in my programming environment. I did not care much about the ideas behind it. STL documentations were only interesting up to the point where it came to functions, etc. Then I skipped reading and just used the containers. But yesterday, still being relaxed from my holidays, I just gave it a try and wanted to go a bit more the stl way. So I used the transform function (can I have a little bit of applause for me, thank you). From an academic point of view it really looked interesting and it worked. But the thing that boroughs me is that if you intensify the use of those functions, you need 10ks of helper classes for mostly everything you want to do in your code. The hole logic of the program is sliced in tiny pieces. This slicing is not the result of god coding habits. It's just a technical need. Something, that makes my life probably harder not easier. And I learned the hard way, that you should always choose the simplest approach that solves the problem at hand. And I can't see what, for example, the for_each function is doing for me that justifies the use of a helper class over several simple lines of code that sit inside a normal loop so that everybody can see what is going on. I would like to know, what you are thinking about my concerns? Did you see it like I do when you started working this way and have changed your mind when you got used to it? Are there benefits that I overlooked? Or do you just ignore this stuff as I did (and will go an doing it, probably). Thanks. PS: I know that there is a real for_each loop in boost. But I ignore it here since it is just a convenient way for my usual loops with iterators I guess.

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  • Sharing same vector control between different places

    - by Alexander K
    Hi everyone, I'm trying to implement the following: I have an Items Manager, that has an Item class inside. Item class can store two possible visual representations of it - BitmapImage(bitmap) and UserControl(vector). Then later, in the game, I need to share the same image or vector control between all possible places it takes place. For example, consider 10 trees on the map, and all point to the same vector control. Or in some cases this can be bitmap image source. So, the problem is that BitmapImage source can be easily shared in the application by multiple UIElements. However, when I try to share vector control, it fails, and says Child Element is already a Child element of another control. I want to know how to organize this in the best way. For example replace UserControl with other type of control, or storage, however I need to be sure it supports Storyboard animations inside. The code looks like this: if (bi.item.BitmapSource != null) { Image previewImage = new Image(); previewImage.Source = bi.item.BitmapSource; itemPane.ItemPreviewCanvas.Children.Add(previewImage); } else if (bi.item.VectorSource != null) { UserControl previewControl = bi.item.VectorSource; itemPane.ItemPreviewCanvas.Children.Add(previewControl); } Thanks in advance

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  • CompositionHost.Initialize() can not execute twice.

    - by Khoa
    I am currently try to integrate MEF and PRISM to work with each other. Everything is working fine so far. Now i would like to use MEF runtime module discovery (DeploymentCatalog) which will be used to download XAPs from server directory and then plug it into one of the Region inside my MAIN UI. I am using UnityBootStrapper and inside this class i also integrated MEF container. This sample application is based on Glenn Block (http://codebetter.com/glennblock/2010/01/03/mef-and-prism-exploration-mef-module-loading/). The following code is used to initialize CompositionContainer inside my Bootstrapper: // This is the host catalog which contains all parts of running assembly. var catalog = GetHostCatalog(); // Create MEF container which initial catalog var container = new CompositionContainer(catalog); // here we explicitly map a part to make it available on imports elsewhere, using // Unity to resolve the export so dependencies are resolved // We do this because region manager is third-party ... therefore, we need to // export explicitly because the implementation doesn't have its own [export] tag container.ComposeExportedValue<IRegionManager>(Container.Resolve<IRegionManager>()); container.ComposeExportedValue<IEventAggregator>(Container.Resolve<IEventAggregator>()); // Obtain CatalogService as a singleton // All dynamic modules will use this service to add its parts. Container.RegisterInstance<ICatalogService>(new CatalogService(catalog)); // Initialize the container CompositionHost.Initialize(container); Now i have another class called DeploymentCatalogService which is used to download the XAP from server. The current problem i am facing is that inside DeploymentCatalogService Initialize method, CompositionHost container is try to initialize its container with aggregateCatalog again. _aggregateCatalog = new AggregateCatalog(); _aggregateCatalog.Catalogs.Add(new DeploymentCatalog()); CompositionHost.Initialize(_aggregateCatalog); This causes an Exception which stated that The container has already been initialized. Is there a way to use the existing container and update it with the new aggregateCatalog? Hope this is not too confusing. Please be nice i am still new to MEF. Cheers,

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  • Is there a way to get the PREMATCH ($`) and POSTMATCH ($') from pcrecpp?

    - by Eric Peers
    Is there a way to obtain the C++ equivalent of Perl's PREMATCH ($`) and POSTMATCH ($') from pcrecpp? I would be happy with a string, a char *, or pairs indices/startpos+length that point at this. StringPiece seems like it might accomplish part of this, but I'm not certain how to get it. in perl: $_ = "Hello world"; if (/lo\s/) { $pre = $`; #should be "Hel" $post = $'; #should be "world" } in C++ I would have something like: string mystr = "Hello world"; //do I need to map this in a StringPiece? if (pcrecpp::RE("lo\s").PartialMatch(mystr)) { //should I use Consume or FindAndConsume? //What should I do here to get pre+post matches??? } pcre plainjane c seems to have the ability to return the vector with the matches including the "end" portion of the string, so I could theoretically extract such a pre/post variable, but that seems like a lot of work. I like the simplicty of the pcrecpp interface. Suggestions? Thanks! --Eric

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  • Entity Framework 5 Enum Naming

    - by Tyrel Van Niekerk
    I am using EF 5 with migrations and code first. It all works rather nicely, but there are some issues/questions I would like to resolve. Let's start with a simple example. Lets say I have a User table and a user type table. The user type table is an enum/lookup table in my app. So the user table has a UserTypeId column and a foreign key ref etc to UserType. In my poco, I have a property called UserType which has the enum type. To add the initial values to the UserType table (or add/change values later) and to create the table in the initial migrator etc. I need a UserType table poco to represent the actual table in the database and to use in the map files. I mapped the UserType property in the User poco to UserTypeId in the UserType poco. So now I have a poco for code first/migrations/context mapping etc and I have an enum. Can't have the same name for both, so do I have a poco called UserType and something else for the enum or have the poco for UserType be UserTypeTable or something? More importantly however, am I missing some key element in how code first works? I tried the example above, ran Add-Migration and it does not add the lookup table for the enum.

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  • How to globalize ASP.NET MVC views (decimal separators in particular)?

    - by Pawel Krakowiak
    I'm working with the NerdDinner sample application and arrived at the section which deals with the Virtual Earth map. The application stores some values for the longitude and latitude. Unfortunately on my system floating point numbers are stored with a comma as the decimal separator, not a dot like in the US. So if I have a latitude of 47.64 it's retrieved and displayed as 47,64. Because that value is passed in a function call to the Virtual Earth API it fails at that point (e.g. JavaScript API expects 47.64, -122.13, but gets 47,64, -122,13). I need to make sure that the application always uses dots. In a WebForms app I would have a common class which overrides the System.Web.UI.Page.InitializeCulture() method and I would be inheriting my pages from that class. I am not sure about how to do the same with MVC. Do I need a customized ViewPage or something? Is there an easy way to solve this? Examples?

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  • android opengl es texture mapping into polygons

    - by kamil
    I wrote opengl es code for android to map textures on a square but i want to draw texture on polygons. When user moved the image, texture will be mapped on polygons have more vertexes. I tried the arrays combination below for pentagon but i could not find the correct triangle combination in indices array. public float vertices[] = { // -1.0f, 1.0f, 0.0f, //Top Left // -1.0f, -1.0f, 0.0f, //Bottom Left // 1.0f, -1.0f, 0.0f, //Bottom Right // 1.0f, 1.0f, 0.0f //Top Right -1.0f, 1.0f, 0.0f, //Top Left -1.0f, -1.0f, 0.0f, //Bottom Left 1.0f, -1.0f, 0.0f, //Bottom Right 1.0f, 1.0f, 0.0f, //Top Right 0.4f, 1.4f, 0.0f }; /** Our texture pointer */ private int[] textures = new int[1]; /** The initial texture coordinates (u, v) */ private float texture[] = { //Mapping coordinates for the vertices // 1.0f, 0.0f, // 1.0f, 1.0f, // 0.0f, 1.0f, // 0.0f, 0.0f, // 0.0f, 1.0f, // 0.0f, 0.0f, // 1.0f, 0.0f, // 1.0f, 1.0f, 0.0f, 0.0f, 0.0f, 1.0f, 1.0f, 1.0f, 1.0f, 0.0f, 1.0f, 0.7f, }; /** The initial indices definition */ private byte indices[] = { //2 triangles // 0,1,2, 2,3,0, 0,1,2, 2,3,4, 3,4,0, //triangles for five vertexes }; i draw with the code below gl.glDrawElements(GL10.GL_TRIANGLES, indices.length, GL10.GL_UNSIGNED_BYTE, indexBuffer);

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  • What could cause these Apache crash errors ?

    - by jacobanderssen
    Hello guys. I had a server crash several days ago. I use Cacti to keep stats: at the time when the server crashed, a huge spike from Load 1 to Load 200 occurred, with over 800 processes in the run queue ( from 300 average). Upon checking /var/log/httpd I notice this: * glibc detected /usr/sbin/httpd: double free or corruption (out): 0x00002b8f3142c2f0 ** Followed by alot of these: [Sat Mar 13 19:20:20 2010] [warn] child process 3090 still did not exit, sending a SIGTERM [Sat Mar 13 19:20:20 2010] [warn] child process 3091 still did not exit, sending a SIGTERM Followed by this: ======= Backtrace: ========= /lib64/libc.so.6[0x2b8f1463c2ef] /lib64/libc.so.6(cfree+0x4b)[0x2b8f1463c73b] /usr/lib64/libapr-1.so.0(apr_pool_destroy+0x131)[0x2b8f13f98821] /usr/sbin/httpd[0x2b8f126df47e] /usr/sbin/httpd[0x2b8f126df4ab] /lib64/libpthread.so.0[0x2b8f141b87c0] /etc/httpd/modules/mod_file_cache.so[0x2b8f1cdf00fb] ======= Memory map: ======== And finally a lot of these: [Sat Mar 13 19:20:27 2010] [error] could not make child process 733 exit, attempting to continue anyway [Sat Mar 13 19:20:27 2010] [error] could not make child process 24560 exit, attempting to continue anyway [Sat Mar 13 19:20:27 2010] [error] could not make child process 31384 exit, attempting to continue anyway I am also noticing one or two lines like this: [Mon Mar 15 01:17:26 2010] [notice] child pid 20765 exit signal Segmentation fault (11) Please help me shed some light on this. Thanks !

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  • problem with two key ranges in couchdb

    - by Duasto
    I'm having problem getting the right results in my coordinate system. To explain my system, I have this simple database that have x_axis, y_axis and name columns. I don't need to get all the data, I just need to display some part of it. For example, I have a coordinate system that have 10:10(meaning from x_axis -10 to 10 and from y_axis -10 to 10) and I want to display only 49 coordinates. In sql query I can do it something like this: "select * from coordinate where x_axis = -3 and x_axis <= 3 and y_axis = -3 y_axis <= 3" I tried this function but no success: "by_range": { "map": "function(doc) { emit([doc.x_axis, doc.y_axis], doc) }" } by_range?startkey=[-3,-3]&endkey=[3,3] I got a wrong results of: -3x-3 -3x-2 -3x-1 -3x0 -3x1 -3x2 -3x3 <-- should not display this part -- -3x4 -3x5 -3x6 -3x7 -3x8 -3x9 -3x10 <-- end of should not display this part -- ..... up to 3x3 to give you a better understanding of my project here is the screenshot of that I want to be made: Oops they don't allowed new poster to post an image img96(dot)imageshack(dot)us/img96/5382/coordinates(dot)jpg <<< just change the "(dot)" to "."

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  • Best practices for creating a logger library using log4net. Is

    - by VolleyBall Player
    My goal is to create a log4net library that can be shared across multiple projects. In my solution which is in .net 4.0, I created a class library called Logger and referenced it from web project. Now I created a logger.config in the class library and put all the configuration in the logger.config file. I then used [assembly: log4net.Config.XmlConfigurator(Watch = true, ConfigFile = "Logger.config")] When I run the web app nothing is getting logged. So I added this line of code in web.config <add key="log4net.Internal.Debug" value="true"/> which gave me debugging info and error information Failed to find configuration section 'log4net' in the application's .config file. Check your .config file for the and elements. The configuration section should look like: I moved the configuration from logger.config to web.config and everything seems to work fine. I don't want the log4net configuration in web.config but have it logger.config as a cleaner approach. The goal is to make other projects use this library and not have to worry about configuration in every project. Now the question is, How do I do this? What am I doing wrong? Any suggestion with code example will be beneficial to everyone. FYI, I am using structure map IOC to reslove the logger before logging to it.

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  • Java Applet - ArrayIndexOutOfBoundsException (pt 2)

    - by Dan
    Hi there, I fixed my previous problem. But now when on my tile map... if I try to go 9 tiles to the RIGHT, and on trying to get to the 9th tile.... I will get this error: Exception in thread "AWT-EventQueue-1" java.lang.ArrayIndexOutOfBoundsException: 8 at tileGen.blocked(tileGen.java:125) at tileGen.keyPressed(tileGen.java:58) at java.awt.Component.processKeyEvent(Component.java:6221) at java.awt.Component.processEvent(Component.java:6040) at java.awt.Container.processEvent(Container.java:2041) at java.awt.Component.dispatchEventImpl(Component.java:4630) at java.awt.Container.dispatchEventImpl(Container.java:2099) at java.awt.Component.dispatchEvent(Component.java:4460) at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1850) at java.awt.DefaultKeyboardFocusManager.dispatchKeyEvent(DefaultKeyboardFocusManager.java:712) at java.awt.DefaultKeyboardFocusManager.preDispatchKeyEvent(DefaultKeyboardFocusManager.java:990) at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:855) at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:676) at java.awt.Component.dispatchEventImpl(Component.java:4502) at java.awt.Container.dispatchEventImpl(Container.java:2099) at java.awt.Component.dispatchEvent(Component.java:4460) at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) Here is code: http://www.so.pastebin.com/hYkpQf13 I have tried many solutions, all of which have failed. Maybe someone here can I help me? Thank you.

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  • Super inplace controls in_place_select displays incorrectly

    - by Magicked
    I'm using the super_inplace_controls plugin to allow users to edit fields on the "show" page. However, I'm running into an issue with the in_place_select function. Here is my view: <p> <b>Status:</b> <%= in_place_select :incident, :incident_status, :choices => @statuses.map { |e| [e.name, e.id] } %> </p> This is in the 'Incident' view. IncidentStatus is a separate table that has_many Incidents. In the Incident controller, I retrieve @statuses like so: @statuses = IncidentStatus.find(:all) Everything works fine for the in_place_select, except the original display. In my browser, it shows: Status: #<IncidentStatus:0x1033147d8> Which means it's not grabbing the current incident_status.name, but it's just changing the object to a string. I'm not sure how to fix this! When I click on the "IncidentStatus:0x1033147d8", everything works properly and I can select the proper fields. Thanks for any help!

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  • Nested Resource testing RSpec

    - by Joseph DelCioppio
    I have two models: class Solution < ActiveRecord::Base belongs_to :owner, :class_name => "User", :foreign_key => :user_id end class User < ActiveRecord::Base has_many :solutions end with the following routing: map.resources :users, :has_many => :solutions and here is the SolutionsController: class SolutionsController < ApplicationController before_filter :load_user def index @solutions = @user.solutions end private def load_user @user = User.find(params[:user_id]) unless params[:user_id].nil? end end Can anybody help me with writing a test for the index action? So far I have tried the following but it doesn't work: describe SolutionsController do before(:each) do @user = Factory.create(:user) @solutions = 7.times{Factory.build(:solution, :owner => @user)} @user.stub!(:solutions).and_return(@solutions) end it "should find all of the solutions owned by a user" do @user.should_receive(:solutions) get :index, :user_id => @user.id end end And I get the following error: Spec::Mocks::MockExpectationError in 'SolutionsController GET index, when the user owns the software he is viewing should find all of the solutions owned by a user' #<User:0x000000041c53e0> expected :solutions with (any args) once, but received it 0 times Thanks in advance for all the help. Joe

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  • Consistent HashCode() and Equals() results, but inconsistent TreeMap.containsKey() result

    - by smessing
    I have the following object Node: private class Node implements Comparable<Node>(){ private String guid(); ... public boolean equals(Node o){ return (this == o); } public int hashCode(){ return guid.hashCode(); } ... } And I use it in the following TreeMap: TreeMap<Node, TreeSet<Edge>> nodes = new TreeMap<Node, TreeSet<Edge>>(); Now, the tree map is used in a class called Graph to store nodes currently in the graph, along with a set of their edges (from the class Edge). My problem is when I try to execute: public containsNode(n){ for (Node x : nodes.keySet()) { System.out.println("HASH CODE: "); System.out.print(x.hashCode() == n.hashCode()); System.out.println("EQUALS: "); System.out.print(x.equals(n)); System.out.println("CONTAINS: "); System.out.print(nodes.containsKey(n)); System.out.println("N: " + n); System.out.println("X: " + x); } } I sometimes get the following: HASHCODE: true EQUALS: true CONTAINS: false N: foo X: foo Anyone have an idea as to what I'm doing wrong? I'm still new to all this, so I apologize in advance if I'm overlooking something simple (I know hashCode() doesn't really matter for TreeMap, but I figured I'd include it).

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  • Cleaning up when exiting an OpenGL app

    - by Daniel
    This might be a dumb question but I've spent some time asking Google and haven't been able to find anything. I have an an OSX OpenGL app I'm trying to modify. When I create the app a whole bunch of initialisation functions are called -- including methods where I can specify my own mouse and keyboard handlers etc. For example: glutInit(&argc, argv); glutInitDisplayMode(GLUT_DEPTH | GLUT_DOUBLE | GLUT_RGBA); glutInitWindowPosition(100, 100); glutInitWindowSize(700, 700); glutCreateWindow("Map Abstraction"); glutReshapeFunc(resizeWindow); glutDisplayFunc(renderScene); glutIdleFunc(renderScene); glutMouseFunc(mousePressedButton); glutMotionFunc(mouseMovedButton); glutKeyboardFunc(keyPressed); At some point I pass control to glutMainLoop and my application runs. In the process of running I create a whole bunch of objects. I'd like to clean these up. Is there any way I can tell GLUT to call a cleanup method before it quits?

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  • WSDL first for existing service layer

    - by Jurgen H
    I am working on an existing Java project with a typical services - dao setup for which only a webapplication was available. My job is to add webservices on top of the services layer, but the webservices have their own functional analysis and datamodel. The functional analyses ofcource focuses on what is possible in the different service methods. As good practice demands, we used the WSDL first strategy and generated JAXB bound Java classes and a SEI for the webservices. After having implemented the webservices partially, we noticed a 70% match between the datamodel. This resulted in writing converters which take the webservice JAXB classes and map them with the service layer classes. Customer customer = new Customer(); customer.setName(wsCustomer.getName()); customer.setFirstName(wsCustomer.getFirstName(); .. This is a very obvious example, some other mappings where little more complicated. Can anyone give his best practices, experiences, solutions to this kind of situations? Are any of these frameworks usefull? http://transmorph.sourceforge.net/wiki/index.php/Main_Page http://ezmorph.sourceforge.net/ Please don't start a discussion about WSDL first vs code first.

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  • Parse large XML file w/ script or use BioPython API ?

    - by jeremy04
    Hey guys this is my first question on here. I'm trying to make a local copy of the UniprotKB in SQL. The UniprotKB is 2.1GB, and it comes in XML and a special text format used by SwissProt Here are my options: 1) Use a SAX parser (XML) - I chose Ruby, and Nokogiri. I started writing the parser, but my initial reaction: how would I map the XML schema to the SAX parser? 2) BioPython - I already have BioSQL/Biopython installed, which literally created my SQL schema for me, and I was able to successfully insert one SwissProt/Uniprot txt file into the database. I'm running it right now (crosses fingers) on the entire 2.1gb. Here is the code I'm running: from Bio import SeqIO from BioSQL import BioSeqDatabase from Bio import SwissProt server = BioSeqDatabase.open_database(driver = "MySQLdb", user = "root", passwd = "", host="localhost", db = "bioseqdb") db = server["uniprot"] iterator = SeqIO.parse(open("/path/to/uniprot_sprot.dat", "r"), "swiss") db.load(iterator) server.commit() Edit: it's now crashing because the transactions are getting locked (since the tables are Innodb) Error Number: 1205 Lock wait timeout exceeded; try restarting transaction. I'm using MySQL version: 5.1.43 Should I switch my database to Postgrelsql ?

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  • Difference between MVC FilterAttribute and Filter

    - by zaaaaphod
    I'm trying to write my own custom AuthorizationAttribute that uses DI. I'm using the MUNQ IoC provider for it's speed and have decided to use constructor injection on all my classes as opposed to post instatiation property binding (because I prefer it). I'm trying to write a custom IFilterProvider that will use my IoC container to return requests for filters (so that I can map concrete classes using the container). I've come up with the following. public class FilterProvider : IFilterProvider { private readonly IocContainer _container; public FilterProvider(IocContainer container) { _container = container; } public IEnumerable<Filter> GetFilters(ControllerContext controllerContext, ActionDescriptor actionDescriptor) { var x = Enumerable.Union<Object>(_container.ResolveAll<IActionFilter>(), _container.ResolveAll<IAuthorizationFilter>()); foreach (Filter actionFilter in x) yield return new Filter(actionFilter, FilterScope.First, null); } } The above code will fail during the foreach because my objects that implement IAuthorizationFilter are based on FilterAttribute and not Filter My question is, what is the difference between Filter and FilterAttribute? I would have thought that there would have been a common link between them, unless I'm missing something. Another deeper question is, how come there is no IFilterAttributeProvider that would support IEnumerable GetFilters(...) Is there some other way that I should be using to resolve IAuthorizationFilter via my IoC container? Thank you very much for your help. Z

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  • Encode_JSON Errors in Lasso 8.6.2 After Period of Time

    - by ATP_JD
    We are in the process of converting apps from Lasso 8 to Lasso 9, and as an intermediate step, have upgraded from 8.5.5 to 8.6.2 (which runs alongside 9 on our new box, in different virtual hosts). I am finding that with 8.6.2 we are getting a slew of errors on pages that call encode_json. The weird thing with these errors is that they don't start happening until some period of time after the site starts. Then, some hours later, all encode_json calls begin to fail with error messages like this: An error occurred while processing your request. Error Information Error Message: No tag, type or constant was defined under the name "?????????????????" with arguments: array: (pair: (-find)=([\x{0020}-\x{21}\x{23}-\x{5b}\x{5d}-\x{10fff}])), (r) at: onCompare with params: 'r' at: JSON with params: 'reload', -Options=array: (-Internal) at: JSON with params: @map: (reload)=(false), (tcstring)=(LZU), (timestring)=(10:42 AM&nbsp;&nbsp;&nbsp;1442Z) at: [...].lasso with params: 'pageloadtime'='1383038310' on line: 31 at position: 1 Error Code: -9948 (Yes, those Chinese(?) characters are in the error message.) I have removed the 8.5.5 encode_json tag from LassoStartup, so we are using the correct built-in method. The encode_json method fails for any and all parameters I throw at it from simple strings to arrays of maps. Upon restarting the site, encode_json resumes working for an hour or two, seemingly depending on load. On 8.5.5, we don't have this problem. Does anyone have experience with this issue? Any advice regarding trying the 8.5.5 tag swap encode_json to see if I can override the built-in method? Maybe it will work better? Thanks in advance for your time and assistance. -Justin

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  • Using an ActiveX control without a form/dialog/window in C++, VS 2008

    - by younevertell
    an ActiveX control generated by Visual Basic 6, very old stuff, it has a couple of methods and one event. now I have to use the control in C++, visual studio 2008, but I don't like to generate a form/dialog/window as constainer. I add some MFC class From ActiveX Control. Now the wrap class has all the methods defined in the ActiveX control. I definitely need add event handler to take care of the event fired by ActiveX control. With a form/dialgue/window, it could be done by below BEGIN_EVENTSINK_MAP ON_EVENT. My questions are 1. how to add the event handler without a form/dialgue/window. Is this impossible? 2. Could I manually add constructor in the ActiveX control wrap class, so I could use new operator to get an instance on the heap? Thanks Add the Event Sinks Map near the start of the definition (.cpp) file. The BEGIN_EVENTSINK_MAP macro takes the container's Class name, then the base class name as parameters. The container's class name is used again in the AFX_EVENTSINK_MAP macro and the ON_EVENT macro.

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