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  • Will an IO blocked process show 100% CPU utilization in 'top' output?

    - by Alex Stoddard
    I have an analysis that can be parallelized over a different number of processes. It is expected that things will be both IO and CPU intensive (very high throughput short-read DNA alignment if anyone is curious.) The system running this is a 48 core linux server. The question is how to determine the optimum number of processes such that total throughput is maximized. At some point the processes will presumably become IO bound such that adding more processes will be of no benefit and possibly detrimental. Can I tell from standard system monitoring tools when that point has been reached? Would the output of top (or maybe a different tool) enable me to distinguish between a IO bound and CPU bound process? I am suspicious that a process blocked on IO might still show 100% CPU utilization.

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  • In sync query calls, one query causing other query to run slower. Why?

    - by Irchi
    Sorry for the long question, but I think this is an interesting situation and I couldn't find any explanations for it: I was involved in optimization of an application that performed a large number of sequential SELECT and INSERT statements on a single dedicated SQL Server database. The process needs to INSERT a large number of records into a table, but for each of them there should be some value mappings, which performed using SELECT statements on another table in the same database. For a specific execution, it took 90 minutes to run. I used a profiler (JProfiler - the application is Java-based) to determine how much time does each part of the application take. It yields that 60% of the time was spent on INSERT method calls, and almost 20% on SELECT calls (the rest distributed in other parts). After some trials, I came to this situation: I commented out the INSERT query that took 60% of the time. I was expecting for the total run time to be around 35 minutes, as I have removed 60% of the 90 minutes. But the whole process took the same 90 minutes (doing only SELECTs and nothing else), but each SELECT took longer this time! Everything was running sync, there were no async calls. And there was only one single thread of execution. SELECT and INSERT queries are very simple, and don't have anything special, and they are on different tables, but on the same DB. I tested with both the DB on the application machine, and on a remote network machine. I can't think of any explanation for this, as the Profiler (Application profiler, not SQL Profiler) reported the changes in the method call times, and by removing INSERT statements SELECT statements took longer to run. Can anyone give me some kind of explanation of what could have happened? (there can't be cache / query optimization stuff, because the queries were run in sync, and in a single thread, and it was far from affecting the cache this much) I should note that the bottleneck of the speed was in SQL server, using most of the CPU time.

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  • C# Dictionary Loop Enhancment

    - by Toto
    Hi, I have a dictionary with around 1 milions items. I am constantly looping throw the dictionnary : public void DoAllJobs() { foreach (KeyValuePair<uint, BusinessObject> p in _dictionnary) { if(p.Value.MustDoJob) p.Value.DoJob(); } } The execution is a bit long, around 600 ms, I would like to deacrese it. Here is the contraints : MustDoJob values mostly stay the same beetween two calls to DoAllJobs() 60-70% of the MustDoJob values == false From time to times MustDoJob change for 200 000 pairs. Some p.Value.DoJob() can not be computed at the same time (COM object call) Here, I do not need the key part of the _dictionnary objet but I really do need it somewhere else I wanted to do the following : Parallelizes but I am not sure is going to be effective due to 4. Sorts the dictionnary since 1. and 2. (and stop want I find the first MustDoJob == false) but I am wondering what 3. would result in I did not implement any of the previous ideas since it could be a lot of job and I would like to investigate others options before. So...any ideas ?

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  • C#: How to implement a smart cache

    - by Svish
    I have some places where implementing some sort of cache might be useful. For example in cases of doing resource lookups based on custom strings, finding names of properties using reflection, or to have only one PropertyChangedEventArgs per property name. A simple example of the last one: public static class Cache { private static Dictionary<string, PropertyChangedEventArgs> cache; static Cache() { cache = new Dictionary<string, PropertyChangedEventArgs>(); } public static PropertyChangedEventArgs GetPropertyChangedEventArgsa(string propertyName) { if (cache.ContainsKey(propertyName)) return cache[propertyName]; return cache[propertyName] = new PropertyChangedEventArgs(propertyName); } } But, will this work well? For example if we had a whole load of different propertyNames, that would mean we would end up with a huge cache sitting there never being garbage collected or anything. I'm imagining if what is cached are larger values and if the application is a long-running one, this might end up as kind of a problem... or what do you think? How should a good cache be implemented? Is this one good enough for most purposes? Any examples of some nice cache implementations that are not too hard to understand or way too complex to implement?

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  • What influences running time of reading a bunch of images?

    - by remi
    I have a program where I read a handful of tiny images (50000 images of size 32x32). I read them using OpenCV imread function, in a program like this: std::vector<std::string> imageList; // is initialized with full path to the 50K images for(string s : imageList) { cv::Mat m = cv::imread(s); } Sometimes, it will read the images in a few seconds. Sometimes, it takes a few minutes to do so. I run this program in GDB, with a breakpoint further away than the loop for reading images so it's not because I'm stuck in a breakpoint. The same "erratic" behaviour happens when I run the program out of GDB. The same "erratic" behaviour happens with program compiled with/without optimisation The same "erratic" behaviour happens while I have or not other programs running in background The images are always at the same place in the hard drive of my machine. I run the program on a Linux Suse distrib, compiled with gcc. So I am wondering what could affect the time of reading the images that much?

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  • unittest in python: ignore an import from the code I want to test

    - by vaidab
    I have a python program that imports pythoncom (and uses pythoncom.CoCreateInstance from it). I want to create a unittest for the program logic without it importing pythoncom (so I can run the test on Linux as well). What options are there? Can I do it without modifying the system under test? What I found so far: sys.modules["pythoncom"] = "test" import module_that_imports_pythoncom My problem with it is if I have: from pythoncom.something import something I'll get: ImportError: No module named something.something And sys.modules["something.something"] or sys.modules["pythoncom.something.something"] doesn't work. Any ideas?

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  • how to test rails js and ajax without a browser

    - by user1679052
    when i use rspec with capybara to test my rails js page , I got the following error: "Selenium::WebDriver::Error::WebDriverError: Could not find Firefox binary (os=linux). " Actually my rails script are all written on the linux server, where there is on brower installed, and any desktop software is not supported on the server (since no X11 is installed). How can I test js in this situation. Or is there and brower that works without X11 installed like wget? Thanks.

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  • Managing test data for Junit tests.

    - by nobody
    Hi, We are facing one problem in managing test data(xmls which is used to create mock objects). The data which we have currently has been evolved over a long period of time. Each time we add a new functionality or test case we add new data to test that functionality. Now, the problem is when the business requirement changes the format( like length or format of a variable) or any change which the test data doesn't support , we need to change the entire test data which is 100s of MBs in size. Could anyone suggest a better method or process to overcome this problem? Any suggestion would be appreciated.

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  • Is putting the javascript before the closing body tag okay on an asp.net website?

    - by Jason Weber
    I pretty much stated what I have to ask. But is taking all of your external .js files and putting them before the closing body tag on your master pages okay on an asp.net website? I'm just going off of what yslow and google speed have been showing. I can't combine these javascripts, so I'm trying to load them "after page load", but doing so makes them useless; some of my jquery things don't work. I moved my .js files above the opening body tag, and they work. What am I doing wrong? And what could I do to load my .js files after page load? Thanks for any advice anybody can offer!

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  • JAVA bytecode optimization

    - by Idob
    This is a basic question. I have code which shouldn't run on metadata beans. All metadata beans are located under metadata package. Now, I use reflection API to find out whether a class is located in the the metadata package. if (newEntity.getClass().getPackage().getName().contains("metadata")) I use this If in several places within this code. The question is: Should I do this once with: boolean isMetadata = false if (newEntity.getClass().getPackage().getName().contains("metadata")) { isMetadata = true; } C++ makes optimizations and knows that this code was already called and it won't call it again. Does JAVA makes optimization? I know reflection API is a beat heavy and I prefer not to lose expensive runtime.

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  • rake test fails

    - by Pavel K.
    i have a model (simplified) class Myfile < ActiveRecord::Base validates_attachment_size :body, :less_than => AdminOptions.first.max_file_size.megabytes end max_file_size is defined in AdminOptions fixture, but when i try to run "rake test", i get: /usr/local/lib/ruby/gems/1.8/gems/activesupport-2.3.5/lib/active_support/whiny_nil.rb:52:in `method_missing': undefined method `max_file_size' for nil:NilClass (NoMethodError) from /myapp/app/models/myfile.rb:1 if i run ruby test/unit/myfile_test.rb i get same mistake. if i run: RAILS_ENV=test rake db:load:fixtures ruby test/unit/myfile_test.rb tests execute properly. if i try to RAILS_ENV=test rake db:load:fixtures rake test it fails with same mistake. does anyone know how to fix that?

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  • Create a PHP cache system in MySQL database?

    - by Zach Smith
    I'm creating a web service that often scrapes data from remote web pages. After scraping this data, I have a simple multidimensional array of information to use. The scraping process is fairly taxing on my server, and the page load takes a while. I was considering adding a simple cache system using a MySQL database, where I create one row per remote web page with a the array of information pulled from it stored as a JSON encoded string. Is this a good enough system? Or would something like a text file per web page be a better idea?

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  • Scheduling a visual studio load test using powershell giving me BSOD

    - by user952342
    I have a visual studio load test which I want to run every hour so that I can start to collect some data. To do this, I thought it would be best to make a little powershell script and put a command like this inside: Invoke-Expression -command "& '$env:VS100COMNTOOLS..\IDE\mstest.exe' /testcontainer:"C:\Users\benb\Documents\Visual Studio 2010\Projects\BBPerformanceTest\bin\Debug\HomePageOnly.loadtest"" That command works fine, but sometimes when its run I get a blue screen of death. However, when I run my load test through the visual studio GUI, I never get a BSOD. two questions: is it possible to avoid this BSOD? Is there another way I can schedule my load test? Thanks

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  • How to test that action uses argument?

    - by Caster Troy
    I am supposed to be using test-driven development but in this particular case, as I am having trouble, I implemented the action method first. It looks like this: public ViewResult Index(int pageNumber = 1) { var posts = repository.All(); var model = new PagedList<Post>(posts, pageNumber, PageSize); return View(model); } Both the repository and the PagedList<> have been tested already. Now I want to verify that when the action is given a page number that the page number is actually considered. private Mock<IPostsRepository> repository; private HomeController controller; [Test] public void Index_Doohickey() { var actual = controller.Index(2); // .. How do I test that the controller actually uses the page number here? }

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  • JavaScript: Is there a better way to retain your array but efficiently concat or replace items?

    - by Michael Mikowski
    I am looking for the best way to replace or add to elements of an array without deleting the original reference. Here is the set up: var a = [], b = [], c, i, obj; for ( i = 0; i < 100000; i++ ) { a[ i ] = i; b[ i ] = 10000 - i; } obj.data_list = a; Now we want to concatenate b INTO a without changing the reference to a, since it is used in obj.data_list. Here is one method: for ( i = 0; i < b.length; i++ ) { a.push( b[ i ] ); } This seems to be a somewhat terser and 8x (on V8) faster method: a.splice.apply( a, [ a.length, 0 ].concat( b ) ); I have found this useful when iterating over an "in-place" array and don't want to touch the elements as I go (a good practice). I start a new array (let's call it keep_list) with the initial arguments and then add the elements I wish to retain. Finally I use this apply method to quickly replace the truncated array: var keep_list = [ 0, 0 ]; for ( i = 0; i < a.length; i++ ){ if ( some_condition ){ keep_list.push( a[ i ] ); } // truncate array a.length = 0; // And replace contents a.splice.apply( a, keep_list ); There are a few problems with this solution: there is a max call stack size limit of around 50k on V8 I have not tested on other JS engines yet. This solution is a bit cryptic Has anyone found a better way?

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  • How can I pass in specific parameters to mstest in Visual Studio

    - by Eric Langland
    I'm trying to modify my test projuect to allow for remote invocation of an api we're building. Right now the tests are hard coded to run locally(against localhost), but I would like to be able to point the tests at any endpoint (even remote ones in production). Ideally there would be a place in the .testsettings for config values to be stored. Sadly this isn't the case. Or, being able to pass parameters to MSTest that the test would read...? Any ideas? Thanks in advance.

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  • C# Attributes Aren't Supposed to Inherit

    - by Adam
    Since attributes don't inherit in C# (at least I didn't think they did) - how does the following code still display the Hello popup when the MyTestMethod test is run: [TestClass] public class BaseTestClass { [TestInitialize] public void Foo() { System.Windows.Forms.MessageBox.Show("Hello"); } } [TestClass] public class TestClass : BaseTestClass { [TestMethod] public void MyTestMethod() { Assert.IsTrue(true); } }

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  • DomDocument::loadHTML() error during phpunit test execution

    - by ranhan
    I am currently trying to write some unit test against my zend framework controller. When I run the following code I receive this error: public function testListActionShouldContainListTable() { $this->loginToSystem(); $uri = $this->_uriBase . 'campaign/list'; $_SERVER["REQUEST_URI"] = $uri; $this->dispatch('/campaign/list'); $this->assertController('campaign'); $this->assertAction('list'); $this->assertQueryCount('#list',1); } CampaignControllerTests::testListActionShouldContainListTable DOMDocument::loadHTML(): ID alrt already defined in Entity, line: 36 This occurs using any of the assertQuery and assertQueryContains methods. I have searched around but am not really finding a good answer to why it won't allow me to find this html node or how to get around this error. Thanks in advance for any help!

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  • Optimizing landing pages

    - by Oleg Shaldybin
    In my current project (Rails 2.3) we have a collection of 1.2 million keywords, and each of them is associated with a landing page, which is effectively a search results page for a given keywords. Each of those pages is pretty complicated, so it can take a long time to generate (up to 2 seconds with a moderate load, even longer during traffic spikes, with current hardware). The problem is that 99.9% of visits to those pages are new visits (via search engines), so it doesn't help a lot to cache it on the first visit: it will still be slow for that visit, and the next visit could be in several weeks. I'd really like to make those pages faster, but I don't have too many ideas on how to do it. A couple of things that come to mind: build a cache for all keywords beforehand (with a very long TTL, a month or so). However, building and maintaing this cache can be a real pain, and the search results on the page might be outdated, or even no longer accessible; given the volatile nature of this data, don't try to cache anything at all, and just try to scale out to keep up with traffic. I'd really appreciate any feedback on this problem.

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  • can a program written in C be faster than one written in OCaml and translated to C?

    - by Ole Jak
    So I have some cool Image Processing algorithm. I have written it in OCaml. It performs well. I now I can compile it as C code with such command ocamlc -output-obj -o foo.c foo.ml (I have a situation where I am not alowed to use OCaml compiler to bild my programm for my arcetecture, I can use only specialy modified gcc. so I will compile that programm with sometyhing like gcc -L/usr/lib/ocaml foo.c -lcamlrun -lm -lncurses and Itll run on my archetecture.) I want to know in general case can a program written in C be faster than one written in OCaml and translated to C?

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  • TDD, Unit Test and architectural changes

    - by Leandro
    I'm writing an RPC middleware in C++. I have a class named RPCClientProxy that contains a socket client inside: class RPCClientProxy { ... private: Socket* pSocket; ... } The constructor: RPCClientProxy::RPCClientProxy(host, port) { pSocket = new Socket(host, port); } As you can see, I don't need to tell the user that I have a socket inside. Although, to make unit tests for my proxies it would be necessary to create mocks for sockets and pass them to the proxies, and to do so I must use a setter or pass a factory to the sockets in the proxies's constructors. My question: According to TDD, is it acceptable to do it ONLY because the tests? As you can see, these changes would change the way the library is used by a programmer.

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  • NUnit [Test] is not a valid attribute

    - by tyndall
    I've included the necessary assemblies into a Windows Class project in VS2008. When I start to try to write a test I get a red squiggle line and the message [Test] is not a valid attribute. I've used NUnit before... maybe an earlier version. What am I doing wrong? I'm on version 2.5.2. using System; using System.Collections.Generic; using System.Linq; using System.Text; using NUnit; using NUnit.Core; using NUnit.Framework; namespace AccessPoint.Web.Test { public class LoginTests { [Test] public void CanLogin() { } } }

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