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  • Which programming language could I use for Natural Language Processing to extract clinical words?

    - by MACEE
    I am going to do entity extraction (like Named Entity Recognition) from clinical free text (unstructured raw text such as discharge summaries) and these entities could be any medical problem, medical tests or treatments. I am going to use one of i2b2 datasets (https://www.i2b2.org/) if case you are familiar with that. I am new to the NLP(Natural Language Processing) field and I need a programming language to support NLP tasks and also easily connect to the available libraries of machine learning algorithms like CRF. I don't know much java and I heard about Python, Perl and Scala but I am not sure which one would be the best option for this task?

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  • Rails version not shown post installation

    - by mgj
    Hi all, I had installed rubygems 1.8 and further on I had installed the rails 2.0.2 gem. When I tried to view the rails version installed through the command rails -v It didn't work.. I am unable to figure out why I am getting an "invalid option" on executing the command rails -v ( Please refer the below for the same). mohnish@mohnish-laptop:~/Downloads$ ruby -v ruby 1.8.7 (2010-01-10 patchlevel 249) [i486-linux] mohnish@mohnish-laptop:~/Downloads$ gem list *** LOCAL GEMS *** actionmailer (2.0.2) actionpack (2.0.2) activerecord (2.0.2) activeresource (2.0.2) activesupport (2.0.2) rails (2.0.2) rake (0.8.7) mohnish@mohnish-laptop:~/Downloads$ rails -v getopt: invalid option -- 'v' Terminating... mohnish@mohnish-laptop:~/Downloads$ Could you please help me out on this regard.. Please note I am currently not making use of the ruby version manager(rvm). Please let me know if I could get a solution once I install the rvm. Thanks for your help..

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  • When should one use the Abstract, Implements, or extends keywords?

    - by kdavis8
    I'm just now moving from a beginner to intermediate level android programmer in the java language. i can successfully write a game framework of classes that work together to accomplish a task beyond basic things, like hello world. but i'm having issues with some pretty basic OOP concepts; When should i derive from an abstract class? When is it more efficient to use an Interface instead of simply sub classing a parent? Basically, between extends, implements, and the abstract keywords, which keywords should be used instead of the others? i'm not looking for a basic definition, as i know them. i need to no when and why i should apply them to my code? what advantages does one have over the other? which is best for game development?

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  • Loading XML file containing leading zeros with SSIS preserving the zeros

    - by Compudicted
    Visiting the MSDN SQL Server Integration Services Forum oftentimes I could see that people would pop up asking this question: “why I am not able to load an element from an XML file that contains zeros so the leading/trailing zeros would remain intact?”. I started to suspect that such a trivial and often-required operation perhaps is being misunderstood by the developer community. I would also like to add that the whole state of affairs surrounding the XML today is probably also going to be increasingly affected by a motion of people who dislike XML in general and many aspects of it as XSD and XSLT invoke a negative reaction at best. Nevertheless, XML is in wide use today and its importance as a bridge between diverse systems is ever increasing. Therefore, I deiced to write up an example of loading an arbitrary XML file that contains leading zeros in one of its elements using SSIS so the leading zeros would be preserved keeping in mind the goal on simplicity into a table in SQL Server database. To start off bring up your BIDS (running as admin) and add a new Data Flow Task (DFT). This DFT will serve as container to adding our XML processing elements (besides, the XML Source is not available anywhere else other than from within the DFT). Double-click your DFT and drag and drop the XMS Source component from the Tool Box’s Data Flow Sources. Now, let the fun begin! Being inspired by the upcoming Christmas I created a simple XML file with one set of data that contains an imaginary SSN number of Rudolph containing several leading zeros like 0000003. This file can be viewed here. To configure the XML Source of course it is quite intuitive to point it to our XML file, next what the XML source needs is either an embedded schema (XSD) or it can generate one for us. In lack of the one I opted to auto-generate it for me and I ended up with an XSD that looked like: <?xml version="1.0"?> <xs:schema attributeFormDefault="unqualified" elementFormDefault="qualified" xmlns:xs="http://www.w3.org/2001/XMLSchema"> <xs:element name="XMasEvent"> <xs:complexType> <xs:sequence> <xs:element minOccurs="0" name="CaseInfo"> <xs:complexType> <xs:sequence> <xs:element minOccurs="0" name="ID" type="xs:unsignedByte" /> <xs:element minOccurs="0" name="CreatedDate" type="xs:unsignedInt" /> <xs:element minOccurs="0" name="LastName" type="xs:string" /> <xs:element minOccurs="0" name="FirstName" type="xs:string" /> <xs:element minOccurs="0" name="SSN" type="xs:unsignedByte" /> <!-- Becomes string -- > <xs:element minOccurs="0" name="DOB" type="xs:unsignedInt" /> <xs:element minOccurs="0" name="Event" type="xs:string" /> <xs:element minOccurs="0" name="ClosedDate" /> </xs:sequence> </xs:complexType> </xs:element> </xs:sequence> </xs:complexType> </xs:element> </xs:schema> As an aside on the XML file: if your XML file does not contain the outer node (<XMasEvent>) then you may end up in a situation where you see just one field in the output. Now please note that the SSN element’s data type was chosen to be of unsignedByte (and this is for a reason). The reason is stemming from the fact all our figures in the element are digits, this is good, but this is not exactly what we need, because if we will attempt to load the data with this XSD then we are going to either get errors on the destination or most typically lose the leading zeros. So the next intuitive choice is to change the data type to string. Besides, if a SSIS package was already created based on this XSD and the data type change was done thereafter, one should re-set the metadata by right-clicking the XML Source and choosing “Advanced Editor” in which there is a refresh button at the bottom left which will do the trick. So far so good, we are ready to load our XML file, well actually yes, and no, in my experience typically some data conversion may be required. So depending on your data destination you may need to tweak the data types targeted. Let’s add a Data Conversion Task to our DFT. Your package should look like: To make the story short I only will cover the SSN field, so in my data source the target SQL Table has it as nchar(10) and we chose string in our XSD (yes, this is a big difference), under such circumstances the SSIS will complain. So will go and manipulate on the data type of SSN by making it Unicode String (DT_WSTR), World String per se. The conversion should look like: The peek at the Metadata: We are almost there, now all we need is to configure the destination. For simplicity I chose SQL Server Destination. The mapping is a breeze, F5 and I am able to insert my data into SQL Server now! Checking the zeros – they are all intact!

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  • Oracle Commerce Best Practices for the Communications Industry

    - by Michael Seback
      In today’s volatile economy, Communications Service Providers are challenged to offer a complete, cross-channel commerce experience. With Oracle Commerce solutions, CSPs can get closer to customers and gain valuable insight to maximize ROI across all commerce activities. Join us for a  live webcast on September 26th with featured speakers Raghavendra Ademane, Omni-Channel Commerce Consultant at Professional Access and Brenna Johnson, Product Manager, Oracle and learn how you can manage and deliver commerce experiences for Communications that engage customers and promote loyalty. The panelists will guide you through a number of topics including: Current Communications market trends, opportunities and challenges Introduction to the Oracle Commerce solution with case studies Demonstration of the solution for Communications with live Q&A Register today and learn how Oracle's latest innovations for Communications can help you increase online sales and enhance cross-channel commerce interactions.

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  • Install a different version of a package

    - by Michael Wiles
    I'm running lucid server and have installed tomcat. The version it installed is 6.0.24-2ubuntu1.6. Is this the version I'm tied to? Is it possible to install a more recent version? The one available from maverick is 6.0.28. Maybe I can add a source to provide my lucid install with this version? In the package manager user interface I can "force version". Is it possible to force version from command line alternative as well?

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  • Website with sections in Drupal?

    - by Matt Hampel
    What is the best way to create a website with sections in Drupal? Users need to be able to add, remove, and nest pages fairly easily. Pages added to a section should have an appropriate URL, like "/[section name]/[page title]". This seems like a straightforward task, but I can't find the right combination of tools to do it. Subsite comes close, but for some odd reason, doesn't set up the correct content paths. The closest I got was creating a book for each subsection, but that feels like I'm using the wrong tool for the job. Edited with my solution: I used organic groups with pathauto. I set pathauto so that pages in groups had URLs that were of the form [group path]/[page title].

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  • Need instructions how to create wpa_supplicant.conf and add fast_reauth=0 to it // WPA 2 Enterprise & frequent wlan disconnects

    - by nutty about natty
    Like many other natty users on a university / academic network, I'm experiencing annoying frequent disconnects / hangs / delays. See, for instance: https://bugs.launchpad.net/ubuntu/+source/wpasupplicant/+bug/429370 I would like to learn how to add fast_reauth=0 to the wpa_supplicant.conf file. This file, it seems, does not exit by default, and needs to be manually created first: http://w1.fi/gitweb/gitweb.cgi?p=hostap.git;a=blob_plain;f=wpa_supplicant/README [quote] You will need to make a configuration file, e.g., /etc/wpa_supplicant.conf, with network configuration for the networks you are going to use. [unquote] Further, I installed wpa_gui which probably needs to be launched with parameters, else it's pretty blank... What I'm hoping for is this: That creating a wpa_supplicant.conf file with fast_reauth=0 in it, saving it to the relevant path, will work and make my uni wireless (more or even completely) stable. I read mixed reviews about wicd (as an alternative to the network manager). Also note that on my basic wlan at home (with bog-standard wpa encryption) the connection is stable. Thanks!

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  • Wireless USB Adapter driver configuration

    - by Jones
    First I would like agree one thing that this is fully for Ubuntu, not for BackTrack. However I'm posting my BackTrack question here since I find similar problems in backtrack forum are being unanswered and Linux/Unix site of StackExchange has very low attraction. I'm having USB wifi adapter (iBall Baton), having chipset RTL8191SU. It displays available wifi networks in Wicd manager. But while trying to connect it gives me bad password. When I'm trying to run airmon-ng it didn't returned me the monitor mode. I tried to replace with Ubuntu 12.10 drivers. But it totally nulled the device functionality. However I restored the drivers. I'm interested to compile drivers as if anyone indicate the methods. Awaiting ideas!

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  • How can I get start openbox at login using the GNOME/Openbox session?

    - by skyblue
    I want to be able to run openbox as my window manager in GNOME. If I install openbox, I get the additional choices at the GDM login window of a 'GNOME/Openbox' and an 'openbox session'. If I log in with the 'openbox session', it starts openbox successfully. However, if I log in using the 'GNOME/Openbox' session so that I can run GNOME but just replace metacity with openbox, I find that openbox does not start, and that metacity is managing my application windows. It looks something is not working in the GNOME/Openbox session in 10.04 (and possibly other versions of Ubuntu). I know that I can manually replace metacity with openbox by typing 'openbox --replace', but I want to know the correct way of starting openbox in a GNOME environment automatically at logon.

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  • How do I get Picasa 3.9 to play .MOV files?

    - by user44405
    I have been using Picasa for years, first in XP then in Ubuntu from 8.04 onwards & now in Lubuntu 11.10. For 11.10, I downloaded Picasa3.9.0 from FileHippo & installed it in Wine. Everything works well, except it doesn't play videos from my camera - it just shows a thumbnail - whereas earlier versions played videos OK. The videos appear as **.MOV (QuickTime video) in file manager, & can be played by, for instance, GNOME MPlayer or Movie Player (but not properly by Banshee...). Is there some simple way of getting Picasa 3.9 to play them?

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  • Oracle will be a Bronze Sponsor of Grace Hopper Celebration of Women in Cmputing

    - by bubbva
    Oracle is proud to be a Bronze Sponsor at the upcoming Grace Hopper Celebration of Women in Computing from October 3-6, 2012 in Baltimore, MD. Oracle's Women's Leadership group, Oracle's Diversity & Inclusion program and Product Development are proud to be behind this sponsorship.Several women from Oracle will be presenting and participating at the conference: Industry Track: "From Engineer to Executive; The Path Forward", speaker Susan Zwinger VP, Global Systems Technology Service Center Industry Track: "Are We There Yet? Finding Your Career Sweet Spot", speaker Gilda Garreton, Principal Software Engineer Birds of a feather:  "Juggling Our Different Worlds", speaker Gilda Garreton New Investigator Co-Chair, Gilda Garreton Communities Committee Co-Chair, Valerie Fenwick, Manager Software Development "Considering a shift in career from Technical towards Management?" table host,  Valerie Fenwick Oracle will have a booth as well, so stop by and introduce yourself!

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  • window borders, menu bar missing over VNC

    - by zacaj
    I'm running Ubuntu 14.04 with Unity and Gnome3, however I don't have a screen hooked up anymore. I have installed x11vnc and run it with "-create" so that it will create a new X11 session, however when I VNC to it, the menu bar, window borders, etc are missing, windows are ordered based on creation time, and cannot be resized. Now, I don't really care if I end up with Ubuntu or Gnome's window manager, as long as this doesn't mess up my normal desktop stuff if I should happen to hook a monitor up again, and I'm not even attached to x11vnc if someone can point me to a good complete tutorial using something else, but I've been trying vino and tightvnc and rdp and x11vnc is the only one I've managed to get this far.

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  • No more: "What was my password again? Was it 12345 or 123456?"

    - by hinkmond
    Keep track of all your passwords with this Java ME password tracker on your Java feature phone. See: Java ME KeePassMobile Here's a quote: You can put all your passwords in one database, which is locked with one master key and/or a key file. ... KeePassMobile is a password manager software for mobile phones (J2ME platform) that is compatible to KeePass. With KeePassMobile you are able to store all your passwords in a highly-encrypted KeePass (1.x*) database on your mobile phone and view them on the go! Don't leave home without it! And, don't forget your master password either, because if you do... you're pretty much fried with Y-rays. Hinkmond

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  • Does Unity support disabling the global application menu?

    - by Michael E
    I'm fairly excited for Unity, as it looks like a promising new direction for Ubuntu. However, I do have a concern - will it be possible to use Unity without the global menu? I have my window manager set to focus-follows-mouse/sloppy focus, and find the productivity gains to be immense. Sloppy focus is incompatible, however, with global menus, as it is possible for the focus to change while you move from window to menu. Will Unity support an option to use window menus while still using Unity?

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  • Multiple Vertex Buffers per Mesh

    - by Daniel
    I've run into the situation where the size of my mesh with all its vertices and indices, is larger than the (optimal) vertex buffer object upper limit (~8MB). I was wondering if I can sub-divide the mesh across multiple vertex buffers, and somehow retain validity of the indices. Ie a triangle with a indice at the first vertex, and an indice at the last (ie in seperate VBOs). All the while maintaining this within Vertex Array Objects. My thoughts are, save myself the hassle, and for meshes (messes :P) such as this, just use the necessary size ( 8MB); which is what I do at the moment. But ideally my buffer manager (wip) at the moment is using optimal sizes; I may just have to make a special case then... Any ideas? If necessary, a simple C++ code example is appreciated. Note: I have also cross-posted this on stackoverflow, as I was not sure as to which it would be more suitable (its partly a design question).

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  • Creating your First Crystal Report for Use in a .NET Application

    Have you ever had to create a custom report within an application you have written for a customer? Most developers have, and there are two schools of thought on how developers normally perform this task. Some choose to create the report using the same technology that the application was created in (ASP, WinFrom, WPF) while others choose to use a reporting package such as Crystal Reports. Using a reporting package will help create reports rapidly. This article walk you through the creation of your first report using Crystal Reports.Did you know that DotNetSlackers also publishes .net articles written by top known .net Authors? We already have over 80 articles in several categories including Silverlight. Take a look: here.

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  • Creating your First Crystal Report for Use in a .NET Application

    Have you ever had to create a custom report within an application you have written for a customer? Most developers have, and there are two schools of thought on how developers normally perform this task. Some choose to create the report using the same technology that the application was created in (ASP, WinFrom, WPF) while others choose to use a reporting package such as Crystal Reports. Using a reporting package will help create reports rapidly. This article walk you through the creation of your first report using Crystal Reports.

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  • Reminder: GlassFish 3.1 Clustering Webinar Today!

    - by alexismp
    Quick reminder for those of you that missed the GlassFish Clustering Webinar from March, we have a new session today (June 28th, 2011). The session is planned at 10:00 a.m. PT / 1:00 p.m. ET / 19.00 CT and you'll need to register first. John Clingan, Principal Product Manager for GlassFish, will walk you through the various clustering features introduced and enhanced in version 3.1. This includes the SSH-based provisioning of clusters (never log in to any machine again), the centralized administration, High Availability and smart failover, load-balancer, Domain Admin Server (DAS) performance improvements, cluster deployments and more. Other than learning about these new product features this is also your chance to ask questions to John and other GlassFish team members. See you there!

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  • Upgrade Ubuntu 11.10 to 12.10

    - by Daniel Minassian
    To whoever can help, I want to update the ubuntu on my laptop to 12.10 from the current version 11.10, when i click on the update manager i get a partial update gui, if i click cancel on that i get the gui for update which has three buttons check, install updates and upgrade. The upgrade button upgrades only to 12.04.1.LTS, when i press check it checks and gives me this error "W:Failed to fetch h t t p://lb.archive.ubuntu.com/ubuntu/dists/precise/main/i18n/Index No Hash entry in Release file /var/lib/apt/lists/partial/lb.archive.ubuntu.com_ubuntu_dists_precise_main_i18n_Index , W:Failed to fetch h t t p://lb.archive.ubuntu.com/ubuntu/dists/precise/multiverse/i18n/Index No Hash entry in Release file /var/lib/apt/lists/partial/lb.archive.ubuntu.com_ubuntu_dists_precise_multiverse_i18n_Index , W:Failed to fetch http://lb.archive.ubuntu.com/ubuntu/dists/precise/restricted/i18n/Index No Hash entry in Release file /var/lib/apt/lists/partial/lb.archive.ubuntu.com_ubuntu_dists_precise_restricted_i18n_Index , W:Failed to fetch http://lb.archive.ubuntu.com/ubuntu/dists/precise/universe/i18n/Index No Hash entry in Release file /var/lib/apt/lists/partial/lb.archive.ubuntu.com_ubuntu_dists_precise_universe_i18n_Index , E:Some index files failed to download. They have been ignored, or old ones used instead." Thank you for your time and help, Daniel Minassian

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  • Mixing Forms and Token Authentication in a single ASP.NET Application (the Details)

    - by Your DisplayName here!
    The scenario described in my last post works because of the design around HTTP modules in ASP.NET. Authentication related modules (like Forms authentication and WIF WS-Fed/Sessions) typically subscribe to three events in the pipeline – AuthenticateRequest/PostAuthenticateRequest for pre-processing and EndRequest for post-processing (like making redirects to a login page). In the pre-processing stage it is the modules’ job to determine the identity of the client based on incoming HTTP details (like a header, cookie, form post) and set HttpContext.User and Thread.CurrentPrincipal. The actual page (in the ExecuteHandler event) “sees” the identity that the last module has set. So in our case there are three modules in effect: FormsAuthenticationModule (AuthenticateRequest, EndRequest) WSFederationAuthenticationModule (AuthenticateRequest, PostAuthenticateRequest, EndRequest) SessionAuthenticationModule (AuthenticateRequest, PostAuthenticateRequest) So let’s have a look at the different scenario we have when mixing Forms auth and WS-Federation. Anoymous request to unprotected resource This is the easiest case. Since there is no WIF session cookie or a FormsAuth cookie, these modules do nothing. The WSFed module creates an anonymous ClaimsPrincipal and calls the registered ClaimsAuthenticationManager (if any) to transform it. The result (by default an anonymous ClaimsPrincipal) gets set. Anonymous request to FormsAuth protected resource This is the scenario where an anonymous user tries to access a FormsAuth protected resource for the first time. The principal is anonymous and before the page gets rendered, the Authorize attribute kicks in. The attribute determines that the user needs authentication and therefor sets a 401 status code and ends the request. Now execution jumps to the EndRequest event, where the FormsAuth module takes over. The module then converts the 401 to a redirect (302) to the forms login page. If authentication is successful, the login page sets the FormsAuth cookie.   FormsAuth authenticated request to a FormsAuth protected resource Now a FormsAuth cookie is present, which gets validated by the FormsAuth module. This cookie gets turned into a GenericPrincipal/FormsIdentity combination. The WS-Fed module turns the principal into a ClaimsPrincipal and calls the registered ClaimsAuthenticationManager. The outcome of that gets set on the context. Anonymous request to STS protected resource This time the anonymous user tries to access an STS protected resource (a controller decorated with the RequireTokenAuthentication attribute). The attribute determines that the user needs STS authentication by checking the authentication type on the current principal. If this is not Federation, the redirect to the STS will be made. After successful authentication at the STS, the STS posts the token back to the application (using WS-Federation syntax). Postback from STS authentication After the postback, the WS-Fed module finds the token response and validates the contained token. If successful, the token gets transformed by the ClaimsAuthenticationManager, and the outcome is a) stored in a session cookie, and b) set on the context. STS authenticated request to an STS protected resource This time the WIF Session authentication module kicks in because it can find the previously issued session cookie. The module re-hydrates the ClaimsPrincipal from the cookie and sets it.     FormsAuth and STS authenticated request to a protected resource This is kind of an odd case – e.g. the user first authenticated using Forms and after that using the STS. This time the FormsAuth module does its work, and then afterwards the session module stomps over the context with the session principal. In other words, the STS identity wins.   What about roles? A common way to set roles in ASP.NET is to use the role manager feature. There is a corresponding HTTP module for that (RoleManagerModule) that handles PostAuthenticateRequest. Does this collide with the above combinations? No it doesn’t! When the WS-Fed module turns existing principals into a ClaimsPrincipal (like it did with the FormsIdentity), it also checks for RolePrincipal (which is the principal type created by role manager), and turns the roles in role claims. Nice! But as you can see in the last scenario above, this might result in unnecessary work, so I would rather recommend consolidating all role work (and other claims transformations) into the ClaimsAuthenticationManager. In there you can check for the authentication type of the incoming principal and act accordingly. HTH

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  • How to create a use case diagram for board game played on PC

    - by user970696
    I'm struggling with a task as I was given to practice UML and use cases. The problem is that I should model computer version of a board game so I am unsure about a few things. obviously it does not matter if you play against the PC or another player, the actions are the same. The game is simply like tic tac toe. E.g. Actor Player ---(Place a diamond)-----include----(Check for a row)---include--(Swap players) But the game is played on the PC, so is Check for row really a use case? And the same with Swap players? Because the system would do that. On the other hand, if it was not, how could I continue?

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  • Prevent shutdown when rsnapshot is running

    - by highsciguy
    Since shutdowns during rsnapshot operation will lead to inconsistent/partial backups, I wonder how to delay the system shutdown while rsnapshot is active. The task is complicated by the fact that I need a solution which is compatible with non-expert users. I.e. I need to tell reliably to the user that he needs to wait until the process is finished and not to do a hard reset. Once this is the case shutdown should continue. A possible solution could be to replace the action of the window managers (mostly KDE) shutdown/restart/hibernate buttons by a script which first checks if rsync is active and shows a message if this is the case. But I do not know if this is possible in KDE.

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  • Forcing Nautilus to use Kerberos (Active Directory) authentication

    - by user14146
    Is there a way to get Nautilus or any other file manager that runs on Ubuntu 11.04 to use Kerberos for authentication? I'm using Likewise Open to join machines to the domain, and I can't type in passwords for every user on every computer that needs to mount a network share. I've been able to get Kerberos working with the command line smbclient, but oddly Kerberos does not seem to be Nautilus-integrated. I also checked the SSH config file, and it looks like you can enable GSSAPIAuthentication, but it only works for Kerberos v2, not the current version, which I think is v5.

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  • How to get average network load instead of instant

    - by Adam Ryczkowski
    Welcome, I use conky to see network load statistics with sampling every 8 seconds in order to get somewhat more smooth history chart. Unfortunately, all values i get are not average for this 8 second period, but they are sampled from much smaller time span, so charts are the same choppy, as if they were sampled from 1 second or less. Is there any way to get conky (or at least System Monitor) display system properties averaged over specified amount of time, just like Windows' task manager does? I would like to have conky display hard drive usage from iostat, but there will be little use if it, if conky reports instant values not averaged over time.

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