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  • Communicate multiple times with a process without breaking the pipe?

    - by Manux
    Hello, it's not the first time I'm having this problem and its really bugging me. Whenever I open a pipe using the Python subprocess module, I can only communicate with it once, as the documentation specifies: Read data from stdout and stderr, until end-of-file is reached proc = sub.Popen("psql -h darwin -d main_db".split(),stdin=sub.PIPE,stdout=sub.PIPE) print proc.communicate("select a,b,result from experiment_1412;\n")[0] print proc.communicate("select theta,zeta,result from experiment_2099\n")[0] The problem here is that the second time, Python isn't happy. Indeed, he decided to close the file after the first communicate: Traceback (most recent call last): File "a.py", line 30, in <module> print proc.communicate("select theta,zeta,result from experiment_2099\n")[0] File "/usr/lib64/python2.5/subprocess.py", line 667, in communicate return self._communicate(input) File "/usr/lib64/python2.5/subprocess.py", line 1124, in _communicate self.stdin.flush() ValueError: I/O operation on closed file So... multiple communications aren't allowed? I hope not ;) Please enlighten me.

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  • How to suppress error messages in rpy2

    - by Björn
    Hello! The following code does not work. It seems that the R warning message raises a python error. # enable use of python objects in rpy2 import rpy2.robjects.numpy2ri import numpy as np from rpy2.robjects import r # create an example array a = np.array([[5,2,5],[3,7,8]]) # this line leads to a warning message, which in turn raises an # error message if run within a script. result = r['chisq.test'](a) Running that code example in ipython works, however, running it inside a script raises the errorTypeError: 'module' object is unsubscriptable. I assume this is due to the warning message. What is the best way to avoid this problem? Thanks in advance!

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  • How Flask loads blueprint internaly?

    - by Ignas B.
    I'm just interested how Flask's blueprints gets imported. It still imports the python module at the end of all the stuff done by Flask and if I'm right python does two things when importing: registers the module name in the namespace and then initialize it if needed. So if Flask blueprint is initialized when it gets registered, so all the module then is in memory and if there are lots of blueprints to register, the memory just gets wasted, because in one request basically you use one blueprint. Not a big loss but still... But if it is only registered in the namespace and initialized only when needed (when the real request reaches it), then it make sense to register them all at once (as is the recommended way I understood). This is I guess the case here :) But just wanted to ask and understand a bit deeper.

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  • M2Crypto: Is PKey a reference to a Public or a Private key?

    - by Andrea Zilio
    In the PKey class documentation of the M2Crypto python package (an OpenSSL wrapper for Python) it is said that PKey is a reference to a Public key. My opinion is instead that it's a reference to a Private Key because the init method of the PKey class calls the evp_pkey_new openssl function that, from this link: http://linux.die.net/man/3/evp_pkey_new , should allocate a new reference to a private key structure! There are two only possible explaination: The M2Crypto documentation is wrong or the link I've reported has wrong informations. Can someone help me to find the truth?

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  • wxPython TreeCtrl without showing root while still showing arrows

    - by None
    I am making a python tree visualizer using wxPython. It would be used like so: show_tree([ 'A node with no children', ('A node with children', 'A child node', ('A child node with children', 'Another child')) ]) It worked fine but it shows a root with a value of "Tree". I made it so that it would create multiple roots but then learned that I wasn't allowed to do that. I reverted to the original code but used changed it from this: self.tree = wx.TreeCtrl(self) to this: self.tree = wx.TreeCtrl(self, style=wx.TR_HIDE_ROOT). It worked but it didn't show the little arrows on the side so you wouldn't know which nodes had children. Is there any way to hide the root node but keep the arrows. Note: I am on a Mac using Python version 2.5 and wxPython version 2.8.4.0.

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  • Catching KeyboardInterrupt when working with PyGame

    - by Sebastian P.
    I have written a small Python application where I use PyGame for displaying some simple graphics. I have a somewhat simple PyGame loop going in the base of my application, like so: stopEvent = Event() # Just imagine that this eventually sets the stopEvent # as soon as the program is finished with its task. disp = SortDisplay(algorithm, stopEvent) def update(): """ Update loop; updates the screen every few seconds. """ while True: stopEvent.wait(options.delay) disp.update() if stopEvent.isSet(): break disp.step() t = Thread(target=update) t.start() while not stopEvent.isSet(): for event in pygame.event.get(): if event.type == pygame.QUIT: stopEvent.set() It works all fine and dandy for the normal program termination; if the PyGame window gets closed, the application closes; if the application finishes its task, the application closes. The trouble I'm having is, if I Ctrl-C in the Python console, the application throws a KeyboardInterrupt, but keeps on running. The question would therefore be: What have I done wrong in my update loop, and how do I rectify it so a KeyboardInterrupt causes the application to terminate?

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  • py2app generates .app with no errors but .app crashes and quits unexpectedly

    - by user3705730
    I am trying to use py2app and it generates .app with no errors but .app crashes and quits unexpectedly. I am trying to do this in virtualenv so I am not sure if that is an issue with all the paths. It works on my computer when all the virtual environments exist but as soon as I close them down, the .app no longer works. The virtual environment I am using has python 2.7.5 Here is my setup.py: """ This is a setup.py script generated by py2applet Usage: python setup.py py2app """ from setuptools import setup APP = ['myApp.py'] DATA_FILES = [] OPTIONS = {'argv_emulation': True, 'packages': ['pulp']} setup( app=APP, data_files=DATA_FILES, options={'py2app': OPTIONS}, setup_requires=['py2app'], )

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  • Which is quicker? Memcache or file query? (using maxmind geoip.dat file)

    - by tomcritchlow
    Hi, I'm using Python on Appengine and am looking up the geolocation of an IP address like this: import pygeoip gi = pygeoip.GeoIP('GeoIP.dat') Location = gi.country_code_by_addr(self.request.remote_addr) (pygeoip can be found here: http://code.google.com/p/pygeoip/) I want to geolocate each page of my app for a user so currently I lookup the IP address once then store it in memcache. My question - which is quicker? Looking up the IP address each time from the .dat file or fetching it from memcache? Are there any other pros/cons I need to be aware of? For general queries like this, is there a good guide to teach me how to optimise my code and run speed tests myself? I'm new to python and coding in general so apologies if this is a basic concept. Thanks! Tom

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  • Faster alternative to Python's SimpleHTTPServer

    - by Drew Noakes
    Python's SimpleHTTPServer is a great way of serve the contents of the current directory from the command line: python -m SimpleHTTPServer However, as far as web servers go, it's very slooooow... It behaves as though it's single threaded, and occasionally causes timeout errors when loading JavaScript AMD modules using RequireJS. It can take five to ten seconds to load a simple page with no images. What's a faster alternative that is just as convenient?

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  • How to split up a long list using \n

    - by pypy
    Here is a long string that I convert to a list so I can manipulate it, and then join it back together. I am having some trouble being able to have an iterator go through the list and when the iterator reach, let us say every 5th object, it should insert a '\n' right there. Here is an example: string = "Hello my name is Josh I like pizza and python I need this string to be really really long" string = string.split() # do the magic here string = ' '.join(string) print(string) Output: Hello my name is Josh I like pizza and python I need this string to be really really long Any idea how i can achieve this? I tried using: for words in string: if words % 5 == 0: string.append('\n') but it doesn't work. What am I missing?

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  • How do I make PyScript work? Says it cant find python26.dll

    - by Alex
    I installed PyScript to try it out but it just wont start. It only gives me the error: "Error126: Could not open Dll "python26.dll" followed by: "Python could not be properly initialized. We must quit." I think this may have something to do with the PYTHONPATH but since I'm a newbie and dont know what it is or exactly what to put in the PYTHONPATH, after some googling, I ask here. Also, when I tried to install wxPython it was impossible becouse the PYTHONPATH could not be found. I have installed ActivePython 2.6 and the PATH is set so I can access python in cmd.

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  • Planning a skillset for a fallback career [closed]

    - by Davy Kavanagh
    I'm not too certain this is a SO question, but I didn't think it belonged in meta either. Long story short, I am bioinformatics researcher. I like to code, it's my favourite part of the job. I have been thinking for a while that if academia is not kind to me, I might seek a career in software development. My current contract is for three years and I would like to spend some time over the next 3 three years learning and practicing software development as possible. Python seems like a popular language and it what I mostly use to do things for me, but I am also in heavy use of R. So my main question is: Are python and R good things to be learning with a sotfware dev goal in mind, and if so, is there any particular type of programming or software that might be useful to have experience with. Hard questions to answer I know, but I thought I would get the answer from people who are in the know. Cheers, Davy.

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  • Could someone give me their two cents on this optimization strategy

    - by jimstandard
    Background: I am writing a matching script in python that will match records of a transaction in one database to names of customers in another database. The complexity is that names are not unique and can be represented multiple different ways from transaction to transaction. Rather than doing multiple queries on the database (which is pretty slow) would it be faster to get all of the records where the last name (which in this case we will say never changes) is "Smith" and then have all of those records loaded into memory as you go though each looking for matches for a specific "John Smith" using various data points. Would this be faster, is it feasible in python, and if so does anyone have any recommendations for how to do it?

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  • How to print absolute line number in uncaught exception?

    - by DSblizzard
    When error occured Python prints something like this: Traceback (most recent call last): File "<stdin>", line 2, in <module> File "<stdin>", line 8, in m File "<stdin>", line 5, in exec_st File "<stdin>", line 9, in exec_assign File "<stdin>", line 48, in ref_by_id IndexError: list index out of range where 2, ... , 48 are relative line numbers which are not very convenient. How to print absolute line numbers in such error messages? EDIT: Maybe it's a dumb question, but answer will facilitate development a little. I'm printing text in several files. When done, press shortcut which runs python and copies contents of current file to console. Proposed solution forces to press excess keystrokes (Ctrl+S, Alt+Tab) and create additional files. I hope I have put it clear.

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  • Using cProfile results with KCacheGrind

    - by Adam Luchjenbroers
    I'm using cProfile to profile my Python program. Based upon this talk I was under the impression that KCacheGrind could parse and display the output from cProfile. However, when I go to import the file, KCacheGrind just displays an 'Unknown File Format' error in the status bar and sits there displaying nothing. Is there something special I need to do before my profiling stats are compatible with KCacheGrind? ... if profile: import cProfile profileFileName = 'Profiles/pythonray_' + time.strftime('%Y%m%d_%H%M%S') + '.profile' profile = cProfile.Profile() profile.run('pilImage = camera.render(scene, samplePattern)') profile.dump_stats(profileFileName) profile.print_stats() else: pilImage = camera.render(scene, samplePattern) ... Package Versions KCacheGrind 4.3.1 Python 2.6.2

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  • how to get files as they are added to a remote server

    - by Jordan
    I am using a bash script (below) on a remote server (so far using ssh to connect) to execute a python script that downloads a lot of pdf files one at a time (getting the download locations from a text file with the URL's) in a loop. I would like to move the files from the remote server to my local computer as they are downloaded, and then delete the file from the remote server. Is there a way that I can expand my bash script to do this? Or are there alternatives for completing this task? while read line; do python python_script.py -l $line; done < pdfURLs.txt

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  • Is my Joda Time format pattern incorrect to produce a `T` and `Z` inside the parsed DateTime output?

    - by Tree
    Using Joda Time's pattern syntax below, this input string: Sunday, January 09, 2011 6:15:00 PM becomes this datetime: 2011-01-09T06:15:00.000Z Code: String start = "Sunday, January 09, 2011 6:15:00 PM"; DateTimeFormatter parser1 = DateTimeFormat.forPattern("EEEE, MMMM dd, yyyy H:mm:ss aa"); DateTime startTime = parser1.parseDateTime(start); Is this format pattern incorrect? If not, what are the T and Z doing inside the DateTime output? 2011-01-09T06:15:00.000Z

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  • What Can A 'TreeDict' (Or Treemap) Be Used For In Practice?

    - by Seun Osewa
    I'm developing a 'TreeDict' class in Python. This is a basically a dict that allows you to retrieve its key-value pairs in sorted order, just like the Treemap collection class in Java. I've implemented some functionality based on the way unique indexes in relational databases can be used, e.g. functions to let you retrieve values corresponding to a range of keys, keys greater than, less than or equal to a particular value in sorted order, strings or tuples that have a specific prefix in sorted order, etc. Unfortunately, I can't think of any real life problem that will require a class like this. I suspect that the reason we don't have sorted dicts in Python is that in practice they aren't required often enough to be worth it, but I want to be proved wrong. Can you think of any specific applications of a 'TreeDict'? Any real life problem that would be best solved by this data structure? I just want to know for sure whether this is worth it.

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  • What is faster: multiple `send`s or using buffering?

    - by dauerbaustelle
    I'm playing around with sockets in C/Python and I wonder what is the most efficient way to send headers from a Python dictionary to the client socket. My ideas: use a send call for every header. Pros: No memory allocation needed. Cons: many send calls -- probably error prone; error management should be rather complicated use a buffer. Pros: one send call, error checking a lot easier. Cons: Need a buffer :-) malloc/realloc should be rather slow and using a (too) big buffer to avoid realloc calls wastes memory. Any tips for me? Thanks :-)

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  • Understanding CGI and SQL security from the ground up

    - by Steve
    This question is for learning purposes. Suppose I am writing a simple SQL admin console using CGI and Python. At http://something.com/admin, this admin console should allow me to modify a SQL database (i.e., create and modify tables, and create and modify records) using an ordinary form. In the least secure case, anybody can access http://something.com/admin and modify the database. You can password protect http://something.com/admin. But once you start using the admin console, information is still transmitted in plain text. So then you use HTTPS to secure the transmitted data. Questions: To describe to a learner, how would you incrementally add security to the least secure environment in order to make it most secure? How would you modify/augment my three (possibly erroneous) steps above? What basic tools in Python make your steps possible? Optional: Now that I understand the process, how do sophisticated libraries and frameworks inherently achieve this level of security?

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  • What do I need to develop an Iron Python web app in Visual Studio 2010

    - by Greg
    Hi, I've got Visual Studio 2010. To develop a web app in Iron Python (i.e. to use a Ruby like language not C#) what downloads to I need? e.g. is the DLR already in VS2010, Iron Python itself Once setup would I actually be still developing an ASP.net MVC web app but just using Ruby for the language, or is the model something different to this? thanks

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