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  • Inconsistent results in R with RNetCDF - why?

    - by sarcozona
    I am having trouble extracting data from NetCDF data files using RNetCDF. The data files each have 3 dimensions (longitude, latitude, and a date) and 3 variables (latitude, longitude, and a climate variable). There are four datasets, each with a different climate variable. Here is some of the output from print.nc(p8m.tmax) for clarity. The other datasets are identical except for the specific climate variable. dimensions: month = UNLIMITED ; // (1368 currently) lat = 3105 ; lon = 7025 ; variables: float lat(lat) ; lat:long_name = "latitude" ; lat:standard_name = "latitude" ; lat:units = "degrees_north" ; float lon(lon) ; lon:long_name = "longitude" ; lon:standard_name = "longitude" ; lon:units = "degrees_east" ; short tmax(lon, lat, month) ; tmax:missing_value = -9999 ; tmax:_FillValue = -9999 ; tmax:units = "degree_celsius" ; tmax:scale_factor = 0.01 ; tmax:valid_min = -5000 ; tmax:valid_max = 6000 ; I am getting behavior I don't understand when I use the var.get.nc function from the RNetCDF package. For example, when I attempt to extract 82 values beginning at stval from the maximum temperature data (p8m.tmax <- open.nc(tmaxdataset.nc)) with > var.get.nc(p8m.tmax,'tmax', start=c(lon_val, lat_val, stval),count=c(1,1,82)) (where lon_val and lat_val specify the location in the dataset of the coordinates I'm interested in and stval is stval is set to which(time_vec==200201), which in this case equaled 1285.) I get Error: Invalid argument But after successfully extracting 80 and 81 values > var.get.nc(p8m.tmax,'tmax', start=c(lon_val, lat_val, stval),count=c(1,1,80)) > var.get.nc(p8m.tmax,'tmax', start=c(lon_val, lat_val, stval),count=c(1,1,81)) the command with 82 works: > var.get.nc(p8m.tmax,'tmax', start=c(lon_val, lat_val, stval),count=c(1,1,82)) [1] 444 866 1063 ... [output snipped] The same problem occurs in the identically structured tmin file, but at 36 instead of 82: > var.get.nc(p8m.tmin,'tmin', start=c(lon_val, lat_val, stval),count=c(1,1,36)) produces Error: Invalid argument But after repeating with counts of 30, 31, etc > var.get.nc(p8m.tmin,'tmin', start=c(lon_val, lat_val, stval), count=c(1,1,36)) works. These examples make it seem like the function is failing at the last count, but that actually isn't the case. In the first example, var.get.nc gave Error: Invalid argument after I asked for 84 values. I then narrowed the failure down to the 82nd count by varying the starting point in the dataset and asking for only 1 value at a time. The particular number the problem occurs at also varies. I can close and reopen the dataset and have the problem occur at a different location. In the particular examples above, lon_val and lat_val are 1595 and 1751, respectively, identifying the location in the dataset along the lat and lon dimensions for the latitude and longitude I'm interested in. The 1595th latitude and 1751th longitude are not the problem, however. The problem occurs with all other latitude and longitudes I've tried. Varying the starting location in the dataset along the climate variable dimension (stval) and/or specifying it different (as a number in the command instead of the object stval) also does not fix the problem. This problem doesn't always occur. I can run identical code three times in a row (clearing all objects in between runs) and get a different outcome each time. The first run may choke on the 7th entry I'm trying to get, the second might work fine, and the third run might choke on the 83rd entry. I'm absolutely baffled by such inconsistent behavior. The open.nc function has also started to fail with the same Error: Invalid argument. Like the var.get.nc problems, it also occurs inconsistently. Does anyone know what causes the initial failure to extract the variable? And how I might prevent it? Could have to do with the size of the data files (~60GB each) and/or the fact that I'm accessing them through networked drives? This was also asked here: https://stat.ethz.ch/pipermail/r-help/2011-June/281233.html > sessionInfo() R version 2.13.0 (2011-04-13) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] reshape_0.8.4 plyr_1.5.2 RNetCDF_1.5.2-2 loaded via a namespace (and not attached): [1] tools_2.13.0

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  • How can I display more info in an error message when using NUnit Assert in a loop?

    - by Ian
    Consider the following code: [Test] public void WidgetTest() { foreach (Widget widget in widgets) { Assert.AreEqual(0, widget.SomeValue); } } If one of the asserts fails, I will get a very unhelpful error message like the one below: 1) Test Failure : WidgetTest.TestSomeValue Expected: 0 But was: 1 at WidgetTest.TestSomeValue() So, the question is, how can I get NUnit to display more useful info, such as the name of the widget, or the iteration of the loop, etc? Even a line number would be more helpful, since this is run in automated manner and I'd like to be able to spot the failing assert without debugging into the code.

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  • Drupal 6: best way to upgrade jQuery ?

    - by Patrick
    Hi! I want to upgrade jQuery inside my drupal installation. At the moment I have jQuery 1.2.6 and I would like to upgrade it to jQuery 1.4 I guess some Drupal modules still depends on the old jQuery version. I've tried jquery_update module to upgrade jQuery, but it didn't work. It asked to replace the original Drupal files in the "misc" folder with the new ones, but it didn't work. Anyway, I was wondering if there is a better method instead of using another module thanks

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  • What's the best way to use hamcrest-AS3 to test for membership in an IList?

    - by Chris R
    I'm using Flex 3.3, with hamcrest-as3 used to test for item membership in a list as part of my unit tests: var myList: IList = new ArrayCollection(['a', 'b', 'c']).list; assertThat(myList, hasItems('a', 'b', 'c')); The problem is that apparently the IList class doesn't support for each iteration; for example, with the above list, this will not trace anything: for each (var i: * in myList) { trace (i); } However, tracing either an Array or an ArrayCollection containing the same data will work just fine. What I want to do is (without having to tear apart my existing IList-based interface) be able to treat an IList like an Array or an ArrayCollection for the purposes of testing, because that's what hamcrest does: override public function matches(collection:Object):Boolean { for each (var item:Object in collection) { if (_elementMatcher.matches(item)) { return true; } } return false; } Is this simply doomed to failure? As a side note, why would the IList interface not be amenable to iteration this way? That just seems wrong.

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  • When [script] file download fails, how can I tell why?

    - by Bruce
    My web application sends me diagnostic info from the browser javascript telling me that a [script] tag I've injected has failed to download the associated .js file. I can't reproduce this locally, and there is no particular pattern to which file fails, or what the browser type is. There is a pattern to the geo location of the requests - Mexico and Brazil are always more frequent - so I'm guessing that perhaps the internet in general is just more flaky there, and it is just network issues causing the failures. I'd really like to know for sure, though. Is there any way to determine, from the browser javascript, whether the failure occurred because of an error returned by the server, from a network error, or from a protocol timeout? I don't care if the mechanism is browser-specific, since it seems likely that the same issue is causing the error on all browser types.

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  • Stack around variable corrupted when using cvBlobsLib (OpenCV)

    - by jpromvi
    I am trying to do simple image processing with OpenCV and the cvBlobsLib in Visual C++ 2008, and I get an error message when I try to create a CBlobResult object IplImage* original = cvLoadImage("pic6.png",0); cvThreshold(original, original, 100, 255, CV_THRESH_BINARY); CBlobResult blobs = CBlobResult(original, NULL, 255); The message is the following: Run-Time Check Failure #2 - Stack around the variable blobs was corrupted Why does this happen? How should I create this object? Thank you very much for your help.

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  • Trying to understand the Zend_Auth OpenId

    - by Will Olbrys
    I'm using a slightly modified version of the Zend_Auth_OpenId classes to get openid logins from google apps. The results are very positive, as I seem to be getting successful results from Google. I cannot get successful results passed to Zend_Auth, though. For example, Zend_Auth_Adapter_OpenId on line 241: if (!$consumer->login($id, $this->_returnTo, $this->_root, $this->_extensions, $this->_response)) { return new Zend_Auth_Result( Zend_Auth_Result::FAILURE, $id, array("Authentication failed", $consumer->getError())); } The consumer calls login() which in turn calls the private method _checkId() in Zend_OpenId_Consumer. _checkId() always ends in redirecting to the openid server. How is this ever supposed to return a valid Zend_Auth_Result object? I'm pretty close to giving up and trying to implement another OpenId library, but I'm so close to just making this work. I must be missing something so obvious! Maybe I don't understand how openid works exactly, but if someone could help me understand I would really appreciate it.

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  • Simple Java AMPQ server

    - by splix
    Are there exists an simple AMPQ server/broker implementation written in Java? I need it only for local integration tests, starting it from ant/maven, and i don't need any features like a clustering, persistence, performance and so on. Just a fake RabbitMQ-like instance, without installation (just as a dependency at maven pom) and configuration.

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  • PHP callback function not being called

    - by Industrial
    Hi everyone, I've got the following code: function _callback_memcache_failure($host, $port) { print "memcache '$host:$port' failed"; } $this->memcache = new Memcache; $this->memcache->addServer('192.168.1.35', '11211', 0, 50, 10, TRUE, _callback_memcache_failure('192.168.1.35','11211')); The server is online and running (verified!), but the Failure callback function is being called at each connection. Why is that? Reference: PHP documentation: Memcache::addServer - failure_callback Allows the user to specify a callback function to run upon encountering an error. The callback is run before failover is attempted. The function takes two parameters, the hostname and port of the failed server .

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  • Detecting inconsistent revisions of shared sources in SVN

    - by maxim1000
    I have an SVN repository containing several components: LibraryA LibraryB - depends on LibraryA Application - depends on LibraryB and LibraryA More detailed structure (branches and tags are not related to the problem): LibraryA LibraryA_code LibraryB LibraryB_code svn:externals to a fixed revision R1 of LibraryA_code Application Application_code svn:externals to a fixed revision R2 of LibraryA_code svn:externals to a fixed revision R3 of LibraryB_code The problem I'm trying to solve is automatic detection of situation when R2 differs from R1 (breaking expectations of LibraryB_code) and notification about this (e.g. build failure). I'll describe in an answer the only solution which I see for now, but I hope for something more elegant :) Environment: Windows, Visual Studio, SVN.

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  • Automatically start a windows service after install

    - by Chuck Savage
    Which of the two of these are preferable (and why) from the service installer, I've seen both mentioned on different websites (and here on stackoverflow Automatically start a Windows Service on install and How to automatically start your service after install?). // Auto Start the Service Once Installation is Finished. this.AfterInstall += (s, e) => new ServiceController("service").Start(); this.Committed += (s, e) => new ServiceController("service").Start();

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  • Reboot system from Setup project

    - by Ram
    Hi, I am creating a setup project using Visual Studio. I want to reboot the system after the installation completed successfully. I want it one time effort. I do not want to modify the setup each time using any external tool/ utility before delivering it to client. Can I tweak the setup project itself? How Can I do that?

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  • Pass pre-requisite check information from Config file in InstallShield

    - by sameer
    Hi, I'm trying to achieve a requirement in Pre-requisites part of my package: The package should be able to check for the presence of a specific Operating System or Microsoft Patch on the target machine and block installation if the specified OS&patch is not found. I want to pass this information from Configuration xml or ini file, so that installer need not to be edited and build again for changes in requirements. Any ideas on how to achieve this!!

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  • sql connection problem only from another computer

    - by geoff
    I have a task that runs nightly. It connects to a sql server on our network and when I run it from my machine it runs fine. When it runs from the other computer I get the following error. System.Data.SqlClient.SqlException: An error has occurred while establishing a connection to the server. When connecting to SQL Server 2005, this failure may be caused by the fact that under the default settings SQL Server does not allow remote connections. (provider: Named Pipes Provider, error: 40 - Could not open a connection to SQL Server) I've checked with our systems admin and he said nothing has changed on the sql box or on the box in question so I'm not sure why it runs fine from one and not the other. From what I've read about this error it sounds like it's a setting on the sql server that would disallow it to run on either box.

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  • JUnit - Testing a method that in turn invokes a few more methods

    - by stratwine
    Hi, This is my doubt on what we regard as a "unit" while unit-testing. say I have a method like this, public String myBigMethod() { String resultOne = moduleOneObject.someOperation(); String resultTwo = moduleTwoObject.someOtherOperation(resultOne); return resultTwo; } ( I have unit-tests written for someOperation() and someOtherOperation() seperately ) and this myBigMethod() kinda integrates ModuleOne and ModuleTwo by using them as above, then, is the method "myBigMethod()" still considered as a "unit" ? Should I be writing a test for this "myBigMethod()" ? Say I have written a test for myBigMethod()... If testSomeOperation() fails, it would also result in testMyBigMethod() to fail... Now testMyBigMethod()'s failure might show a not-so-correct-location of the bug. One-Cause causing two tests to fail doesn't look so good to me. But donno if there's any better way...? Is there ? Thanks !

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  • Help on choosing which SQL Server 2008 scale-out solution to pick (replication, ...)

    - by usr
    I am currently crossing the jungle of SQL Server scale-out technologies like replication, log-shipping, mirroring... I have the following constraints on my choice: I want the read-only load to be spread accross the primary and the secondary (mirror, subscriber) server Write load can be sent directly to the primary server The solution should be nearly maintainance free. Schema changes should just replicate to the secondary server (attention: replication has some serious constraints here as it seems) Written data should be accessible very quickly (in under 1s, but better would be instantaneously) on the secondary server On server failure I can tollerate up to one hour of data loss easily. I am more concerned with easy scalability Here are some options for what I could pick: http://msdn.microsoft.com/en-us/library/bb510414.aspx. Any experience you could share?

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  • How to complete a git clone for a big project on an unstable connection?

    - by LaPingvino
    I am trying to git clone the LibreOffice codebase, but at the moment I have an internet connection by mobile phone of about 300kbps and it's just anything but stable. I can get the connection back any moment, but then the git clone process already stopped working, and no way to get it running again. Is there some way to have a more failure-resistant git clone download? One option I considered myself is to download someone else's .git directory, but that is overly dependent of others and doesn't seem like the best possible solution to me.

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  • enable TCP in SQL server 2005 express edition

    - by david
    Hello, sorry for answer but how to enable TCP in SQL server 2005 express edition? I used configuration manager, find network configuration/protocols and there enabled TCP, after that I have restarted sql server service and tried installation of problematic software again (software which told me that TCP is not enabled) but I have the same problem :-(

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  • [VC++ 2010] Stack around the variable 'xyz' was corrupted.

    - by tirolerhut
    hi, I'm trying to get some simple piece of code I found on a website to work in VC++ 2010 on windows vista 64: #include "stdafx.h" #include <windows.h> int _tmain(int argc, _TCHAR* argv[]) { DWORD dResult; BOOL result; char oldWallPaper[MAX_PATH]; result = SystemParametersInfo(SPI_GETDESKWALLPAPER, sizeof(oldWallPaper)-1, oldWallPaper, 0); fprintf(stderr, "Current desktop background is %s\n", oldWallPaper); return 0; } it does compile, but when I run it, I always get this error: Run-Time Check Failure #2 - Stack around the variable 'oldWallPaper' was corrupted. I'm not sure what is going wrong, but I noticed, that the value of oldWallPaper looks something like "C\0\:\0\0U\0s\0e\0r\0s[...]" -- I'm wondering where all the \0s come from. A friend of mine compiled it on windows xp 32 (also VC++ 2010) and is able to run it without problems any clues/hints/opinions? thanks

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  • PHP Postgres constraint violation - can I get the constraint name somehow?

    - by RnR
    We have a web application talking to a Postgres SQL database at work - I've set up many constraints on the server to keep data consistent but we have problems with reporting nicely what it is that prevents the user from entering his (invalid) data at a given moment. The only thing we can get is "Constraint violation" but that isn't very descriptive, from perl or directly from PGAdmin we get nice info as to which constraint caused the failure (the constraint's name) - is there a way to do the same in PHP? We're able to upgrade PHP or use a different db access module if it would help so I'm interested in knowing if it's possible to do using any way that you could safely recommend.

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  • google calendar api (java) authentication error in dynamic web project

    - by HazProblem
    org.springframework.web.util.NestedServletException: Handler processing failed; nested exception is java.lang.NoClassDefFoundError: com/google/gdata/util/AuthenticationException org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:823) org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:719) org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:644) org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:560) javax.servlet.http.HttpServlet.service(HttpServlet.java:641) javax.servlet.http.HttpServlet.service(HttpServlet.java:722) org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88) org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) The class i have written works fine as a normal java application, but when i try to use the code in an dynamic web project i get this authentication failure. Where´s the difference?

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