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• Is there a way in Sphinx/Pygments to emphasize one or more lines of code in literal includes?

  - by Casey

  In some sphinx docs I am writing, I am including code samples from an ancillary file like so: .. literalinclude:: mymodule.py :pyobject: MyClass :linenos: This particular doc is a tutorial, where the classes are build up step by step. What I would like to do is include the entire class or a single method, and emphasize only the lines of interest to that section. That way the context is preserved but the interesting parts are obvious at a glance. Right now I have resorted to just referring to line numbers in the text, which is ok, but far from ideal. Looking at the docs and code for sphinx and pygments I don't find an obvious way to do this. I'm not opposed to patching them or doing something tricky in conf.py, but I wondered if anyone had solved this.

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• Using PyLab to create a 2D graph from two separate lists

  - by user324333

  Hey Guys, This seems like a basic problem with an easy answer but I simply cannot figure it out no matter how much I try. I am trying to create a line graph based on two lists. For my x-axis, I want my list to be a set of strings. x_axis_list = ["Jan-06","Jul-06","Jan-07","Jul-07","Jan-08"] y_axis_list = [5,7,6,8,9] Any suggestions on how to best graph these items?

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• who can help me install osqa on bluehost?

  - by rutger

  hi all, i've tried to install osqa on bluehost but i simply have to admit that my skills and knowledge are not sufficient. I'm not getting anywhere. Is there anyone that would consider helping me install osqa on my bluehost account. I'm willing to offer a fair compensation for it. kind regards, Rutger

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• How do we override the choice field display of a reference property in appengine using Django?

  - by Sriram

  The default choice field display of a reference property in appengine returns the choices as the string representation of the entire object. What is the best method to override this behaviour? I tried to override str() in the referenced class. But it does not work.

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• Correct way to detect sequence parameter?

  - by noamtm

  I want to write a function that accepts a parameter which can be either a sequence or a single value. The type of value is str, int, etc., but I don't want it to be restricted to a hardcoded list. In other words, I want to know if the parameter X is a sequence or something I have to convert to a sequence to avoid special-casing later. I could do type(X) in (list, tuple) but there may be other sequence types I'm not aware of, and no common base class. -N. Edit: See my "answer" below for why most of these answers don't help me. Maybe you have something better to suggest.

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• pylab.savefig() and pylab.show() image difference

  - by Jack1990

  I'm making an script to automatically create plots from .xvg files, but there's a problem when I'm trying to use pylab's savefig() method. Using pylab.show() and saving from there, everything's fine. Using pylab.show() Using pylab.savefig() def producePlot(timestep, energy_values,type_line = 'r', jump = 1,finish = 100): fc = sp.interp1d(timestep[::jump], energy_values[::jump],kind='cubic') xnew = numpy.linspace(0, finish, finish*2) pylab.plot(xnew, fc(xnew),type_line) pylab.xlabel('Time in ps ') pylab.ylabel('kJ/mol') pylab.xlim(xmin=0, xmax=finish) def produceSimplePlot(timestep, energy_values,type_line = 'r', jump = 1,finish = 100): pylab.plot(timestep, energy_values,type_line) pylab.xlabel('Time in ps ') pylab.ylabel('kJ/mol') pylab.xlim(xmin=0, xmax=finish) def linearRegression(timestep, energy_values, type_line = 'g'): #, jump = 1,finish = 100): from scipy import stats import numpy #print 'fuck' timestep = numpy.asarray(timestep) slope, intercept, r_value, p_value, std_err = stats.linregress(timestep,energy_values) line = slope*timestep+intercept pylab.plot(timestep, line, type_line) def plottingTime(Title,file_name, timestep, energy_values ,loc, jump , finish): pylab.title(Title) producePlot(timestep,energy_values, 'b',jump, finish) linearRegression(timestep,energy_values) import numpy Average = numpy.average(energy_values) #print Average pylab.legend(("Average = %.2f" %(Average),'Linear Reg'),loc) #pylab.show() pylab.savefig('%s.jpg' %file_name[:-4], bbox_inches= None, pad_inches=0) #if __name__ == '__main__': #plottingTime(Title,timestep1, energy_values, jump =10, finish = 4800) def specialCase(Title,file_name, timestep, energy_values,loc, jump, finish): #print 'Working here ...?' pylab.title(Title) producePlot(timestep,energy_values, 'b',jump, finish) import numpy from pylab import * Average = numpy.average(energy_values) #print Average pylab.legend(("Average = %.2g" %(Average), Title),loc) locs,labels = yticks() yticks(locs, map(lambda x: "%.3g" % x, locs)) #pylab.show() pylab.savefig('%s.jpg' %file_name[:-4] , bbox_inches= None, pad_inches=0) Thanks in advance, John

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• how can I convert a dictionary to a string of keyword arguments?

  - by shahjapan

  we can convert the dictionary to kw using **kw but if I want kw as str(kw) not str(dict), as I want a string with keyword arguments for code_generator, if I pass obj.method(name='name', test='test', relation = [('id','=',1)]) I want a function to return the string like "name='name', test='test', relation = [('id','=',1)]"

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• scoping problem in recursive closure

  - by wiso

  why this work: def function1(): a = 10 def function2(): print a function2() but this not: def function1(): a = 10 def function2(): print a a -= 1 if a>0: function2() function2() error: UnboundLocalError: local variable 'a' referenced before assignment

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• How do you efficiently bulk index lookups?

  - by Liron Shapira

  I have these entity kinds: Molecule Atom MoleculeAtom Given a list(molecule_ids) whose lengths is in the hundreds, I need to get a dict of the form {molecule_id: list(atom_ids)}. Likewise, given a list(atom_ids) whose length is in the hunreds, I need to get a dict of the form {atom_id: list(molecule_ids)}. Both of these bulk lookups need to happen really fast. Right now I'm doing something like: atom_ids_by_molecule_id = {} for molecule_id in molecule_ids: moleculeatoms = MoleculeAtom.all().filter('molecule =', db.Key.from_path('molecule', molecule_id)).fetch(1000) atom_ids_by_molecule_id[molecule_id] = [ MoleculeAtom.atom.get_value_for_datastore(ma).id() for ma in moleculeatoms ] Like I said, len(molecule_ids) is in the hundreds. I need to do this kind of bulk index lookup on almost every single request, and I need it to be FAST, and right now it's too slow. Ideas: Will using a Molecule.atoms ListProperty do what I need? Consider that I am storing additional data on the MoleculeAtom node, and remember it's equally important for me to do the lookup in the molecule-atom and atom-molecule directions. Caching? I tried memcaching lists of atom IDs keyed by molecule ID, but I have tons of atoms and molecules, and the cache can't fit it. How about denormalizing the data by creating a new entity kind whose key name is a molecule ID and whose value is a list of atom IDs? The idea is, calling db.get on 500 keys is probably faster than looping through 500 fetches with filters, right?

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• Tokenize a command string

  - by pocoa

  I have string like this: command "http://www.mysite.com" some_param="string param" some_param2=50 I want to tokenize this string into: command "http://www.mysite.com" some_param="string param" some_param2=50 I know it's possible to split with spaces but these parameters can also be seperated by commas, like: command "http://www.mysite.com", some_param="string param", some_param2=50 I tried to do it like this: \w+\=?\"?.+\"? but it didn't work.

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• How to add a separator in a PyGTK combobox?

  - by mkotechno

  I'm using gtk.combo_box_new_text() to make combobox list, this uses a gtk.ListStore to store only strings, so there are some way to add a separator between items without use a complex gtk.TreeModel? If this is not possible, what is the simplest way to use a gtk.TreeModel to able secuential widget addition?

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• Scraping a page from a secure URL which is possibly using a session ID

  - by VN44CA

  How to scrape a page like this. https://www.procom.ca/JobList.aspx?keywords=&Cities=&reference=&JobType=0 It is secure, and requires a referrer? I can't get anything using wget or httplib2. If you go through this page, you get a list and it works on a browser but not the command line. https://www.procom.ca/jobsearch.aspx I am interested in command line fetching. thx

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• A web framework where AJAX was not an after thought

  - by Pirate for Profit

  AJAX is a pain in the ass because it essentially means you'll have to write two sets of similarish code: one for browsers with JavaScript enabled and those without. Not only this, but you have to connect JavaScript events to hook into your models and display the results. And if all that weren't bad enough, you need to send an address change with the request, otherwise the user won't be able to "click back" correctly (if confused look at what happens to the address bar when you click links in GMail). We're searching for something that had the foresight and design goals with all these concerns in mind. Performance and security are also obvious major concerns. We love config-based systems as well, where you don't have to write a lot of code you just drop it into an easily read config format. It's like asking for the holy grail right?

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• Silence output from SimpleXMLRPCServer

  - by Corey Goldberg

  I am running an xml-rpc server using SimpleXMLRPCServer from the stdlib. My code looks something like this: import SimpleXMLRPCServer import socket class RemoteStarter: def start(self): return 'foo' rs = RemoteStarter() host = socket.gethostbyaddr(socket.gethostname())[0] port = 9000 server = SimpleXMLRPCServer.SimpleXMLRPCServer((host, port)) server.register_instance(rs) server.serve_forever() every time the 'start' method gets called remotely, the server prints an access line like this: <server_name> - - [10/Mar/2010 13:06:20] "POST /RPC2 HTTP/1.0" 200 - I can't figure out a way to silence the output so it doesn't print these access lines to stdout. anyone?

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• Django: Save data from form in DB

  - by Anry

  I have a model: class Cost(models.Model): project = models.ForeignKey(Project) cost = models.FloatField() date = models.DateField() For the model I created a class form: class CostForm(ModelForm): class Meta: model = Cost fields = ['date', 'cost'] view.py: def cost(request, offset): if request.method == 'POST': #HOW save data in DB? return HttpResponseRedirect('/') else: form = CostForm() In the template file determined: <form action="/cost/{{ project }}/" method="post" accept-charset="utf-8"> <label for="date">Date:</label><input type="text" name="date" value={{ current_date }} id="date" /> <label for="cost">Cost:</label><input type="text" name="cost" value="0" id="cost" /> <p><input type="submit" value="Add"></p> </form> How save data from form in DB? P.S. offset = project name Model: class Project(models.Model): title = models.CharField(max_length=150) url = models.URLField() manager = models.ForeignKey(User) timestamp = models.DateTimeField() I tried to write: def cost(request, offset): if request.method == 'POST': form = CostForm(request.POST) if form.is_valid(): instance = form.save(commit=False) instance.project = Project.objects.filter(title=offset) instance.date = request.date instance.cost = request.cost instance.save() return HttpResponseRedirect('/') else: form = CostForm() But it does not work :(

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• Fabfiles With Command Line Arguments

  - by phasetwenty

  Is there a clean way to have your fabfile take command line arguments? I'm writing an installation script for a tool that I want to be able to specify an optional target directory via the command line. I wrote some code to test what would happen if I passed in some command line arguments: # fabfile.py import sys def install(): _get_options() def _get_options(): print repr(sys.argv[1:]) A couple of runs: $ fab install ['install'] Done. $ fab install --electric-boogaloo Usage: fab [options] <command>[:arg1,arg2=val2,host=foo,hosts='h1;h2',...] ... fab: error: no such option: --electric-boogaloo

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• how to count all distinct records in many-to-many relations in django ORM?

  - by marduk-pl

  hi, i have two models: class Project(models.Model): categories = models.ManyToManyField(Category) class Category(models.Model): name = models.CharField() now, i make some queryset: query = Project.objects.filter(id__in=[1,2,3,4]) and i like to get list of all distinct categories in this queryset with count of projects with refering to these categories - exactly i would like to get that results: category1 - 10 projects category2 - 5 projects that is opposite to this query: query2 = query.annotate(Count('categories')) what return me: project1 - 2categories project2 - 7categories how can i make it in django ORM?

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• app-engine-patch and "object_detail" view didn't work

  - by Hugh

  Hi(Sorry for my ugly english) When I calling the flowing: http://192.168.62.90:8000/blog/entry/?agphdXR1bW4xOTEychALEgpibG9nX2VudHJ5GCYM will use this: urlpatterns = patterns('', (r'^media/(?P<path>.*)$', 'django.views.static.serve', {'document_root': settings.MEDIA_ROOT, 'show_indexes': True}), (r'^$', list_detail.object_list, entry_info), (r'^entry/(?P<object_id>.*)$', list_detail.object_detail, {'queryset': Entry.all(), 'template_name': 'sample_test_page.html'}), ) and the error is: Generic view must be called with either an object_id or a slug/slug_field. I want to know why this didn't work for me.

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• Can this code be further optimized??

  - by kaki

  i understand that the code given below will not be compltely understood unless i explain my whole of previous and next lines of code. But this is part of the code which is causing so much of delay in my project and want to optimize this. i want to know which code part is faulty and how could this be replaced. i guess,few can say that use of this function is heavy compared and other ligher method are available to do this work please help, thanks in advance for i in range(len(lists)): save=database_index[lists[i]] #print save #if save[1]!='text0194'and save[1]!='text0526': using_data[save[0]]=save p=os.path.join("c:/begpython/wavnk/",str(str(str(save[1]).replace('phone','text'))+'.pm')) x1=open(p , 'r') x2=open(p ,'r') for i in range(6): x1.readline() x2.readline() gen = (float(line.partition(' ')[0]) for line in x1) r= min(enumerate(gen), key=lambda x: abs(x[1] - float(save[4]))) #print r[0] a1=linecache.getline(str(str(p).replace('.pm','.mcep')), (r[0]+1)) #print a1 p1=str(str(a1).rstrip('\n')).split(' ') #print p1 join_cost_index_end[save[0]]=p1 #print join_cost_index_end gen = (float(line.partition(' ')[0]) for line in x2) r= min(enumerate(gen), key=lambda x: abs(x[1] - float(save[3]))) #print r[0] a2=linecache.getline(str(str(p).replace('.pm','.mcep')), (r[0]+1)) #print a2 p2=str(str(a2).rstrip('\n')).split(' ') #print p2 join_cost_index_strt[save[0]]=p2 #print join_cost_index_strt j=j+1 #print j #print join_cost_index_end #print join_cost_index_strt enter code here here my database_index has about 2,50,000 entries`

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• How to add a Facebook Event with new Graph API

  - by kkubasik

  I am trying to create an event using Facebooks api. (From a django app) Has anyone created an event with the new graph api?

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• Pygame program that can get keyboard input with caps

  - by None

  I have a Pygame program that needs text input. The way it does this is to get keyboard input and when a key is pressed it renders that key so it is added to the screen. Essentially it acts like a text field. The problem is, when you hold shift it doesn't do anything. I relize this is because the program ignores shift input and instead writes the text if it's number is under 128. I have thought of setting a variable when shift is pressed then capitalizing if it was true, but string capitalization only woks on letters, not things like numbers or semicolons. Is there maybe a number I can add to the ascii number typed to modify it if shift is pressed, or something else?

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• Sort by an object's type

  - by Richard Levasseur

  Hi all, I have code that statically registers (type, handler_function) pairs at module load time, resulting in a dict like this: HANDLERS = { str: HandleStr, int: HandleInt, ParentClass: HandleCustomParent, ChildClass: HandleCustomChild } def HandleObject(obj): for data_type in sorted(HANDLERS.keys(), ???): if isinstance(obj, data_type): HANDLERS[data_type](obj) Where ChildClass inherits from ParentClass. The problem is that, since its a dict, the order isn't defined - but how do I introspect type objects to figure out a sort key? The resulting order should be child classes follow by super classes (most specific types first). E.g. str comes before basestring, and ChildClass comes before ParentClass. If types are unrelated, it doesn't matter where they go relative to each other.

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• How to access non-first matches with xpath in Selenium RC ?

  - by Gj

  I have 20 labels in my page: In [85]: sel.get_xpath_count("//label") Out[85]: u'20' And I can get the first one be default: In [86]: sel.get_text("xpath=//label") Out[86]: u'First label:' But, unlike the xpath docs I've found, I'm getting an error trying to subscript the xpath to get to the second label's text: In [87]: sel.get_text("xpath=//label[2]") ERROR: An unexpected error occurred while tokenizing input The following traceback may be corrupted or invalid The error message is: ('EOF in multi-line statement', (216, 0)) ERROR: An unexpected error occurred while tokenizing input The following traceback may be corrupted or invalid The error message is: ('EOF in multi-line statement', (1186, 0)) --------------------------------------------------------------------------- Exception Traceback (most recent call last) /Users/me/<ipython console> in <module>() /Users/me/selenium.pyc in get_text(self, locator) 1187 'locator' is an element locator 1188 """ -> 1189 return self.get_string("getText", [locator,]) 1190 1191 /Users/me/selenium.pyc in get_string(self, verb, args) 217 218 def get_string(self, verb, args): --> 219 result = self.do_command(verb, args) 220 return result[3:] 221 /Users/me/selenium.pyc in do_command(self, verb, args) 213 #print "Selenium Result: " + repr(data) + "\n\n" 214 if (not data.startswith('OK')): --> 215 raise Exception, data 216 return data 217 Exception: ERROR: Element xpath=//label[2] not found What gives?

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• I'm making a simulated tv

  - by Jam

  I need to make a tv that shows the user the channel and the volume, and shows whether or not the television is on. I have the majority of the code made, but for some reason the channels won't switch. I'm fairly unfamiliar with how properties work, and I think that's what my problem here is. Help please. class Television(object): def __init__(self, __channel=1, volume=1, is_on=0): self.__channel=__channel self.volume=volume self.is_on=is_on def __str__(self): if self.is_on==1: print "The tv is on" print self.__channel print self.volume else: print "The television is off." def toggle_power(self): if self.is_on==1: self.is_on=0 return self.is_on if self.is_on==0: self.is_on=1 return self.is_on def get_channel(self): return channel def set_channel(self, choice): if self.is_on==1: if choice>=0 and choice<=499: channel=self.__channel else: print "Invalid channel!" else: print "The television isn't on!" channel=property(get_channel, set_channel) def raise_volume(self, up=1): if self.is_on==1: self.volume+=up if self.volume>=10: self.volume=10 print "Max volume!" else: print "The television isn't on!" def lower_volume(self, down=1): if self.is_on==1: self.volume-=down if self.volume<=0: self.volume=0 print "Muted!" else: print "The television isn't on!" def main(): tv=Television() choice=None while choice!="0": print \ """ Television 0 - Exit 1 - Toggle Power 2 - Change Channel 3 - Raise Volume 4 - Lower Volume """ choice=raw_input("Choice: ") print if choice=="0": print "Good-bye." elif choice=="1": tv.toggle_power() tv.__str__() elif choice=="2": change=raw_input("What would you like to change the channel to?") tv.set_channel(change) tv.__str__() elif choice=="3": tv.raise_volume() tv.__str__() elif choice=="4": tv.lower_volume() tv.__str__() else: print "\nSorry, but", choice, "isn't a valid choice." main() raw_input("Press enter to exit.")

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• Subprocess fails to catch the standard output

  - by user343934

  I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "<string>", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in <module> align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO\__init__.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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