Search Results

Search found 16680 results on 668 pages for 'python datetime'.

facebook twitter digg google delicious technorati stumbleupon myspace wordpress linkedin gmail igoogle windows live tumblr viadeo yahoo buzz yahoo mail yahoo bookmarks favorites email print

Page 374/668 | < Previous Page | 370 371 372 373 374 375 376 377 378 379 380 381  | Next Page >

  • BioPython: extracting sequence IDs from a Blast output file

    - by Jon
    Hi, I have a BLAST output file in XML format. It is 22 query sequences with 50 hits reported from each sequence. And I want to extract all the 50x22 hits. This is the code I currently have, but it only extracts the 50 hits from the first query. from Bio.Blast import NCBIXM blast_records = NCBIXML.parse(result_handle) blast_record = blast_records.next() save_file = open("/Users/jonbra/Desktop/my_fasta_seq.fasta", 'w') for alignment in blast_record.alignments: for hsp in alignment.hsps: save_file.write('>%s\n' % (alignment.title,)) save_file.close() Somebody have any suggestions as to extract all the hits? I guess I have to use something else than alignments. Hope this was clear. Thanks! Jon

    Read the article

  • Math on Django Templates

    - by Leandro Abilio
    Here's another question about Django. I have this code: views.py cursor = connections['cdr'].cursor() calls = cursor.execute("SELECT * FROM cdr where calldate > '%s'" %(start_date)) result = [SQLRow(cursor, r) for r in cursor.fetchall()] return render_to_response("cdr_user.html", {'calls':result }, context_instance=RequestContext(request)) I use a MySQL query like that because the database is not part of a django project. My cdr table has a field called duration, I need to divide that by 60 and multiply the result by a float number like 0.16. Is there a way to multiply this values using the template tags? If not, is there a good way to do it in my views? My template is like this: {% for call in calls %} <tr class="{% cycle 'odd' 'even' %}"><h3> <td valign="middle" align="center"><h3>{{ call.calldate }}</h3></td> <td valign="middle" align="center"><h3>{{ call.disposition }}</h3></td> <td valign="middle" align="center"><h3>{{ call.dst }}</h3></td> <td valign="middle" align="center"><h3>{{ call.billsec }}</h3></td> <td valign="middle" align="center">{{ (call.billsec/60)*0.16 }}</td></h3> </tr> {% endfor %} The last is where I need to show the value, I know the "(call.billsec/60)*0.16" is impossible to be done there. I wrote it just to represent what I need to show.

    Read the article

  • Framework for Implementing REST web service in Django

    - by Laizer
    I'm looking to implement a RESTful interface for a Django application. It is primarily a data-service application - the interface will be (at this point) read-only. The question is which Django toolsets / frameworks make the most sense for this task. I see Django-rest and Django-piston. There's also the option of rolling my own. The question was asked here, but a good two years back. I'd like to know what the current state of play is. In this question, circa 2008, the strong majority vote was to not use any framework at all - just create Django views that reply with e.g. JSON. (The question was also addressed, crica 2008, here.) In the current landscape, what makes the most sense?

    Read the article

  • Can't run os.system command in Django?

    - by danspants
    We have a Django app running on apache server (mod_python) on a windows machine which needs to call some r scripts. To do so it would be easiest to call r through os.system, however when django gets to the os.system command it freezes up. I've also tried subprocess with the same result. We have a possibly related problem in that Django can only access the file system of the machine it's on, all network drives appear to be invisible to it, which is VERY frustrating. Any ideas on both of these issues (I'm assuming it's the same limitation in both instances) would be most appreciated.

    Read the article

  • Use localeURL middleware with apache prefix

    - by Olivier R.
    Good morning everyone, I Got a question about localeURL usage. Everything works great for me with url like this : www.mysite.com/ If I type www.mysite.com/ in adress bar, it turns correctly in www.mysite.com/en/ for example. If I use the view change_locale, it's also all right (ie change www.mysite.com/en/ in www.mysite.com/fr/). But my application use apache as server, and use a prefix for the site, that gives url like this : www.mysite.com/prefix/ If I type www.mysite.com/prefix/ in the adress bar, the adress turns into www.mysite.com/en/ without prefix (so 404) I change code of view to manage our settings.SERVER_PREFIX value : def change_locale(request) : """ Redirect to a given url while changing the locale in the path The url and the locale code need to be specified in the request parameters. O. Rochaix; Taken from localeURL view, and tuned to manage : - SERVER_PREFIX from settings.py """ next = request.REQUEST.get('next', None) if not next: next = request.META.get('HTTP_REFERER', None) if not next: next = settings.SERVER_PREFIX + '/' next = urlsplit(next).path prefix = False if settings.SERVER_PREFIX!="" and next.startswith(settings.SERVER_PREFIX) : prefix = True next = "/" + next.lstrip(settings.SERVER_PREFIX) _, path = utils.strip_path (next) if request.method == 'POST': locale = request.POST.get('locale', None) if locale and check_for_language(locale): path = utils.locale_path(path, locale) if prefix : path = settings.SERVER_PREFIX + path response = http.HttpResponseRedirect(path) return response with this customized view, i'm able to correctly change language, but i'm not sure that's the right way of doing stuff. Is there any option on localeURL to manage prefix of apache ?

    Read the article

  • Is it possible to calculate distance on GeoDjango in a SELECT statement?

    - by alex
    I am using MYSQL. I have a table with 1 column, a Point field. I want to SELECT all rows that have a point with a distance less than 50 meters of my given point. Simple enough, right? Below is how it's done in RAW SQL. But of course, I want to use GeoDjango to do this. cursor.execute("SELECT * FROM project_location WHERE\ (GLength(LineStringFromWKB(LineString(asbinary(utm), asbinary(PointFromWKB(point(%s, %s)))))) < 50)\

    Read the article

  • strip extra quotes from html using uTidy

    - by mridang
    Hi, Could anyone tell me how I could remove extra-quotes from my HTML using uTidy. The malformed HTML tag looks like this: <th align="left""> <input type="submit" style="font-weight: bold;" value="Go"> </th> I would also like to remove some empty attributes in the HTML that looks like this (notice the alt tag): <img src="http://static.foobar.org/images/blank.gif" width="1" height="1" alt="" border="0"> Thank you.

    Read the article

  • How to update QStandartItemModel without freezing the main UI

    - by user1044002
    I'm starting to learn PyQt4 and have been stuck on something for a long time now and can't figure it out myself: Here is the concept: There is a TreeView with custom QStandartItemModel, which gets rebuild every couple of seconds, and can have a lot (hundreds at least) of entries, there also will be additional delegates for the different columns etc. It's fairly complex and the building time for even plain model, without delegates, goes up to .3 sec, which makes the TreeView to freeze. Please advice me for the best approach on solving this. I was thing of somehow building the model in different thread, and eventually sending it to the TreeView, where it would just perform setModel() with the new one, but couldn't make that work. here is some code that may illustrate the problem a bit: from PyQt4.QtCore import * from PyQt4.QtGui import * import sys, os, re, time app = QApplication(sys.argv) REFRESH = 1 class Reloader_Thread(QThread): def __init__(self, parent = None): QThread.__init__(self, parent) self.loaders = ['\\', '--', '|', '/', '--'] self.emit(SIGNAL('refresh')) def run(self): format = '|%d/%b/%Y %H:%M:%S| ' while True: self.emit(SIGNAL('refresh')) self.sleep(REFRESH) class Model(QStandardItemModel): def __init__(self, viewer=None): QStandardItemModel.__init__(self,None) self.build() def build(self): stTime = time.clock() newRows = [] for r in range(1000): row = [] for c in range(12): item = QStandardItem('%s %02d%02d' % (time.strftime('%H"%M\'%S'), r,c)) row.append(item) newRows.append(row) eTime = time.clock() - stTime outStr = 'Build %03f' % eTime format = '|%d/%b/%Y %H:%M:%S| ' stTime = time.clock() self.beginRemoveRows(QModelIndex(), 0, self.rowCount()) self.removeRows(0, self.rowCount()) self.endRemoveRows() eTime = time.clock() - stTime outStr += ', Remove %03f' % eTime stTime = time.clock() numNew = len(newRows) for r in range(numNew): self.appendRow(newRows[r]) eTime = time.clock() - stTime outStr += ', Set %03f' % eTime self.emit(SIGNAL('status'), outStr) self.reset() w = QWidget() w.setGeometry(200,200,800,600) hb = QVBoxLayout(w) tv = QTreeView() tvm = Model(tv) tv.setModel(tvm) sb = QStatusBar() reloader = Reloader_Thread() tvm.connect(tvm, SIGNAL('status'), sb.showMessage) reloader.connect(reloader, SIGNAL('refresh'), tvm.build) reloader.start() hb.addWidget(tv) hb.addWidget(sb) w.show() app.setStyle('plastique') app.processEvents(QEventLoop.AllEvents) app.aboutToQuit.connect(reloader.quit) app.exec_()

    Read the article

  • My method is being recognized within my own program. Newbie mistake probably.

    - by Sergio Tapia
    Here's my code: sentenceToTranslate = raw_input("Please write in the sentence you want to translate: ") words = sentenceToTranslate.split(" ") for word in words: if isVowel(word[0]): print "TEST" def isVowel(letter): if letter.lower() == "a" or letter.lower() == "e" or letter.lower() == "i" or letter.lower() == "o" or letter.lower() == "u": return True else: return False The error I get is: NameError: name 'isVowel' is not defined What am I doing wrong?

    Read the article

  • tweepy documentation

    - by andy
    Hi everybody I just began working on a little twitter-app using tweepy. is there any kind of useful (and complete) documentation for tweepy? I googled like hell but didn't find anything. greetings, Andy

    Read the article

  • Comparing two large sets of attributes

    - by andyashton
    Suppose you have a Django view that has two functions: The first function renders some XML using a XSLT stylesheet and produces a div with 1000 subelements like this: <div id="myText"> <p id="p1"><a class="note-p1" href="#" style="display:none" target="bot">?</a></strong>Lorem ipsum</p> <p id="p2"><a class="note-p2" href="#" style="display:none" target="bot">?</a></strong>Foo bar</p> <p id="p3"><a class="note-p3" href="#" style="display:none" target="bot">?</a></strong>Chocolate peanut butter</p> (etc for 1000 lines) <p id="p1000"><a class="note-p1000" href="#" style="display:none" target="bot">?</a></strong>Go Yankees!</p> </div> The second function renders another XML document using another stylesheet to produce a div like this: <div id="myNotes"> <p id="n1"><cite class="note-p1"><sup>1</sup><span>Trololo</span></cite></p> <p id="n2"><cite class="note-p1"><sup>2</sup><span>Trololo</span></cite></p> <p id="n3"><cite class="note-p2"><sup>3</sup><span>lololo</span></cite></p> (etc for n lines) <p id="n"><cite class="note-p885"><sup>n</sup><span>lololo</span></cite></p> </div> I need to see which elements in #myText have classes that match elements in #myNotes, and display them. I can do this using the following jQuery: $('#myText').find('a').each(function() { var $anchor = $(this); $('#myNotes').find('cite').each(function() { if($(this).attr('class') == $anchor.attr('class')) { $anchor.show(); }); }); However this is incredibly slow and inefficient for a large number of comparisons. What is the fastest/most efficient way to do this - is there a jQuery/js method that is reasonable for a large number of items? Or do I need to reengineer the Django code to do the work before passing it to the template?

    Read the article

  • Which Django 1.2.x multilingual application to use?

    - by mawimawi
    There are a couple of different applications for internationalized content in Django. As of now I only have used http://code.google.com/p/django-multilingual/ in my production environments, but I wonder if there are "better" solutions for my wishes. What my staff users need is the following: An object is being created by a staff user in any language (e.g. "de") This object should be displayed in the german version of the website. When a staff user translates the object into a different language (e.g. "fr"), then the page must be visible in the french version as well. If an object is not translated in the visitor's currently selected language (e.g. "en"), then calling the objects url shall raise a 404 Error (or even better a notice that the object is only available in the languages "de" and "fr", and the visitor might be able to select one of the languages) My staff users are working in the admin interface, so the multilingual application must support this as well. I don't really care whether the multilingual app uses a single table with many fields (like title_en, title_de, title_fr) or a foreign key to a related table (as it is implemented in django-multlingual). I only want it to have a good admin interface and no "default" language, because some content might be available just in "de", and some other just in "fr" and "en". And the most important issue of course is compatibility with Django 1.2.x. What are your experiences and preferred apps, and why?

    Read the article

  • django model Form. Include fields from related models

    - by Tom
    Hi. I have a model, called Student, which has some fields, and a OneToOne relationship with user (django.contrib.auth.User). class Student(models.Model): phone = models.CharField(max_length = 25 ) birthdate = models.DateField(null=True) gender = models.CharField(max_length=1,choices = GENDER_CHOICES) city = models.CharField(max_length = 50) personalInfo = models.TextField() user = models.OneToOneField(User,unique=True) Then, I have a ModelForm for that model class StudentForm (forms.ModelForm): class Meta: model = Student Using the fields attribute in class Meta, i've managed to show only some fields in a template. However, can I indicate which user fields to show? Something as: fields =('personalInfo','user.username') is currently not showing anything. Works with only StudentFields though/ Thanks in advance.

    Read the article

  • strange SqlAlchemy update behaviour

    - by Max
    I'm new to SqlAlchemy and Elixir, so I've started from tutorial and tried to create table, insert a record, and then update it as follows: #'elixir_test.py' from elixir import * metadata.bind = "postgresql://myuser:mypwd@localhost:5432/dbname" metadata.bind.echo = True class Movie(Entity): title = Field(Unicode(30)) year = Field(Integer) description = Field(UnicodeText) def __repr__(self): return '<Movie "%s" (%d)>' % (self.title, self.year) and in another file in the same directory: from elixir_test import * setup_all() #create table create_all() Movie(title=u"Blade Runner", year=1982) #add record session.commit() #get records Movie.query.all() #trying to update record and commit changes, BUT... movie = Movie.query.first() movie.year = 1983 session.commit() #now we have two records in our table, one #with year=1982 and one with year=1983 Movie.query.all() What did I missed?

    Read the article

  • Why is Standard Input is not displayed as I type in Mac OS X Terminal application?

    - by BryanWheelock
    I'm confused by some behavior of my Mac OS X Terminal and my Django manage.py shell and pdb. When I start a new terminal, the Standard Input is displayed as I type. However, if there is an error, suddenly Standard Input does not appear on the screen. This error continues until I shut down that terminal window. The Input is still being captured as I can see the Standard Output. E.g. in pdb.set_trace() I can 'l' to display where I'm at in the code. However, the 'l' will not be displayed, just an empty prompt. This makes it hard to debug because I can't determine what I'm typing in. What could be going wrong and what can I do to fix it?

    Read the article

  • How to unescape special characters from BeautifulSoup output?

    - by Suhail
    Hi, I am facing issues with the special characters like ° and ® which represent the degree Fahrenheit sign and the registered sign, when i print the string the contains the special characters, it gives output like this: Preheat oven to 350&deg; F Welcome to Lorem Ipsum Inc&reg; Is there a way I can output the exact characters and not their codes? Please let me know.

    Read the article

  • Should we have a database independent SQL like query language in Django? [closed]

    - by Yugal Jindle
    Note : I know we have Django ORM already that keeps things database independent and converts to the database specific SQL queries. Once things starts getting complicated it is preferred to write raw SQL queries for better efficiency. When you write raw sql queries your code gets trapped with the database you are using. I also understand its important to use the full power of your database that can-not be achieved with the django orm alone. My Question : Until I use any database specific feature, why should one be trapped with the database. For instance : We have a query with multiple joins and we decided to write a raw sql query. Now, that makes my website postgres specific. Even when I have not used any postgres specific feature. I feel there should be some fake sql language which can translate to any database's sql query. Even Django's ORM can be built over it. So, that if you go out of ORM but not database specific - you can still remain database independent. I asked the same question to Jacob Kaplan Moss (In person) : He advised me to stay with the database that I like and endure its whole power, to which I agree. But my point was not that we should be database independent. My point is we should be database independent until we use a database specific feature. Please explain, why should be there a fake sql layer over the actual sql ?

    Read the article

  • Using sub filters/queries in Google App Engine

    - by fredrik
    Hi, I'm trying to use figure out how to sub query a query that uses a filter. From what I've figured out so far while using .filter() it changes the original query, that leads to a second .filter() would also have to match the first filter. I would like to make something like this: modules = data.Modules.all().filter('page = ', page.key()) modules.filter('name = ', 'Test') modules.filter('name = ', 'Test2') I can't get the "Test2" filter to work. The only solution I have at the moment is to make all new queries. data.Modules.all().filter('page = ', page.key()).filter('name = ', "Test").get() data.Modules.all().filter('page = ', page.key()).filter('name = ', "Test2").get() Or write the same as an GQL. But for me it seams quite stupid way to go. I've looked at using ancestors, but I don't quite understand it and honestly don't know if that's the way to go. Any ideas? ..fredrik

    Read the article

  • missing elements from pcap?

    - by Matthew
    When I check the attributes available to the module pcap, I expect to see something like 'DLT_AIRONET_HEADER', 'DLT_APPLE_IP_OVER_IEEE1394', 'DLT_ARCNET', 'DLT_ARCNET_LINUX', 'DLT_ATM_CLIP', 'DLT_ATM_RFC1483', 'DLT_AURORA', 'DLT_AX25', 'DLT_CHAOS', 'DLT_CISCO_IOS', 'DLT_C_HDLC', 'DLT_DOCSIS', 'DLT_ECONET', 'DLT_EN10MB', 'DLT_EN3MB', 'DLT_ENC', 'DLT_FDDI', 'DLT_FRELAY', 'DLT_IEEE802', 'DLT_IEEE802_11', 'DLT_IEEE802_11_RADIO', 'DLT_IEEE802_11_RADIO_AVS', 'DLT_IPFILTER', 'DLT_IP_OVER_FC', 'DLT_JUNIPER_ATM1', 'DLT_JUNIPER_ATM2', 'DLT_JUNIPER_ES', 'DLT_JUNIPER_GGSN', 'DLT_JUNIPER_MFR', 'DLT_JUNIPER_MLFR', 'DLT_JUNIPER_MLPPP', 'DLT_JUNIPER_MONITOR', 'DLT_JUNIPER_SERVICES', 'DLT_LINUX_IRDA', 'DLT_LINUX_SLL', 'DLT_LOOP', 'DLT_LTALK', 'DLT_NULL', 'DLT_PFLOG', 'DLT_PPP', 'DLT_PPP_BSDOS', 'DLT_PPP_ETHER', 'DLT_PPP_SERIAL', 'DLT_PRISM_HEADER', 'DLT_PRONET', 'DLT_RAW', 'DLT_RIO', 'DLT_SLIP', 'DLT_SLIP_BSDOS', 'DLT_SUNATM', 'DLT_SYMANTEC_FIREWALL', 'DLT_TZSP', 'builtins', 'doc', 'file', 'name', '_newclass', '_object', '_pcap', '_swig_getattr', '_swig_setattr', 'aton', 'dltname', 'dltvalue', 'findalldevs', 'lookupdev', 'lookupnet', 'ntoa', 'pcapObject', 'pcapObjectPtr'] With note on pcapObject. However, all I get when running dir(pcap) is ['DLT_ARCNET', 'DLT_AX25', 'DLT_CHAOS', 'DLT_EN10MB', 'DLT_EN3MB', 'DLT_FDDI', 'DLT_IEEE802', 'DLT_LINUX_SLL', 'DLT_LOOP', 'DLT_NULL', 'DLT_PFLOG', 'DLT_PFSYNC', 'DLT_PPP', 'DLT_PRONET', 'DLT_RAW', 'DLT_SLIP', 'author', 'builtins', 'copyright', 'doc', 'file', 'license', 'name', 'url', 'version', 'bpf', 'dltoff', 'ex_name', 'lookupdev', 'pcap', 'sys'] Noting the lack of pcapObject. Why is this? What could cause this?

    Read the article

  • Losing 'post' requests sent to Pylons paster server

    - by Philip McDermott
    I'm sending post requests to a Pylons server (served by paster serve), and if I send them with any frequency many don't arrive at the server. One at a time is ok, but if I fire off a few (or more) within seconds, only a small number get dealt with. If I send with no post data, or with get, it works fine, but putting just one character of data in the post fields causes massive losses. For example, sending 200, 2 will come back. Sending 100 more slowly, 10 will come back. I'm making the requests form inside a Qt application. Tis will work ok (no data): QString postFields = "" QNetworkRequest request(QUrl("http://server.com/endpoint")); QNetworkReply *reply = networkAccessManager-post(request, postFields.toAscii()); And this will result in only a fraction of the requests being dealt with: QString postFields = "" QNetworkRequest request(QUrl("http://server.com/endpoint")); QNetworkReply *reply = networkAccessManager-post(request, postFields.toAscii()); I've played around with turning on use_threadpool, and other options (threadpool_workers, threadpool_max_requests = 300), of which some combinations can alter the results slightly (best case 10 responses in 200). If I send similar requests to other (non paster) servers, the replies come back ok, so I'm almost certain its'a paster serve config issue. Any help or advice greatly appreciated. Thanks Philip

    Read the article

facebook twitter digg google delicious technorati stumbleupon myspace wordpress linkedin gmail igoogle windows live tumblr viadeo yahoo buzz yahoo mail yahoo bookmarks favorites email print

< Previous Page | 370 371 372 373 374 375 376 377 378 379 380 381  | Next Page >