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• Organizing code, logical layout of segmented files

  - by David H

  I have known enough about programming to get me in trouble for about 10 years now. I have no formal education, though I've read many books on the subject for various languages. The language I am primarily focused on now would be php, atleast for the scale of things I am doing now. I have used some OOP classes for a while, but never took the dive into understanding principals behind the scenes. I am still not at the level I would like to be expression-wise...however my recent reading into a book titled The OOP Thought Process has me wanting to advance my programming skills. With motivation from the new concepts, I have started with a new project that I've coded some re-usable classes that deal with user auth, user profiles, database interfacing, and some other stuff I use regularly on most projects. Now having split my typical garbled spaghetti bowl mess of code into somewhat organized files, I've come into some problems when it comes to making sure files are all included when they need to be, and how to logically divide the scripts up into classes, aswell as how segmented I should be making each class. I guess I have rambled on enough about much of nothing, but what I am really asking for is advise from people, or suggested reading that focuses not on specific functions and formats of code, but the logical layout of projects that are larger than just a hobby project. I want to learn how to do things proper, and while I am still learning in some areas, this is something that I have no clue about other than just being creative, and trial/error. Mostly error. Thanks for any replies. This place is great.

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• How to create a Binary Tree from a General Tree?

  - by mno4k

  I have to solve the following constructor for a BinaryTree class in java: BinaryTree(GeneralTree<T> aTree) This method should create a BinaryTree (bt) from a General Tree (gt) as follows: Every Vertex from gt will be represented as a leaf in bt. If gt is a leaf, then bt will be a leaf with the same value as gt If gt is not a leaf, then bt will be constructed as an empty root, a left subTree (lt) and a right subTree (lr). Lt is a stric binary tree created from the oldest subtree of gt (the left-most subtree) and lr is a stric binary tree created from gt without its left-most subtree. The frist part is trivial enough, but the second one is giving me some trouble. I've gotten this far: public BinaryTree(GeneralTree<T> aTree){ if (aTree.isLeaf()){ root= new BinaryNode<T>(aTree.getRootData()); }else{ root= new BinaryNode<T>(null); // empty root LinkedList<GeneralTree<T>> childs = aTree.getChilds(); // Childs of the GT are implemented as a LinkedList of SubTrees child.begin(); //start iteration trough list BinaryTree<T> lt = new BinaryTree<T>(childs.element(0)); // first element = left-most child this.addLeftChild(lt); aTree.DeleteChild(hijos.elemento(0)); BinaryTree<T> lr = new BinaryTree<T>(aTree); this.addRightChild(lr); } } Is this the right way? If not, can you think of a better way to solve this? Thank you!

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• Jquery validations on form with no fields

  - by jcovert

  I have a table (in a form) populated with radio buttons (with a button for each value in a collection). If the collection is empty, nothing shows up in the table (which is fine). (I'm using Struts2) My trouble comes when validating that the user has selected one of these radio buttons when the submit button is clicked. I'm using JQUERY validations, and it works quite well UNLESS there are no radio buttons to select (collection is empty). $('#startProcessForm').validate({ rules: { selectedProcess: { required: true } }, messages: { selectedProcess: "Please select a process to start." } }); If the list IS empty, then there are no fields (radio button or otherwise) named "selectedProcess". So my question is this: How can I make "selectedProcess" exist AND fail the 'required:true' validation if there's nothing in the collection? I was thinking I could create an empty tag of the same name (selectedProcess) if the collection is empty? Here's what I'd guess would work but doesn't seem to: <s:if test="processes != null && !processes.isEmpty()"> <s:iterator value="processes" status="processesStatus"> <tr> <td><s:radio name="selectedProcess" list="{name}"></s:radio></td> </tr> </s:iterator> </s:if> <s:else> <tr> <td><a name="selectedProcess"></a></td> </tr> </s:else> Thanks!

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• What's the best way to develop a debugging window for an ajax ASP.Net MVC application

  - by KallDrexx

  While developing my ASP.NET MVC, I have started to see the need for a debugging console window to assist in figuring out what is going right and wrong in my code. I read the last few chapters of the Pro Asp.net MVC book, and the author details how to use http modules to show page load/creation times and linq to sql query logs, both of which I definitely want to be able to see. However, since I am loading a lot of small sections of my page individually with ajax I don't want the debug information right there in the middle of my screen. So the idea I came up with was to have a separate browser window (open-able by a link or some javascript) with a console log, that can contain logged entries both from javascript and from the asp.net mvc run. The former should be relatively easy, but I'm having trouble coming up with a way to log the asp.net information in ajax requests. The direction I have been thinking of going is to create an httpmodule (like the Pro MVC book does), and have that module contain some that append the javascript's log to console calls with the messages. The issue I see with this is finding a way to get the log messages from the controller's action methods to the httpmodule's methods. The only way I see to do this is with a singleton, but I'm not sure if singletons are bad practice for a stateless web application. Furthermore, it seems like if I return json with my ajax calls (instead of pure html) then that won't work at all anyways and unless there is a way to add data to an existing json structure inside the httpmodule. How does everyone else handle this type of debugging in heavily ajax applications? For reference, the javascript library I am using is jquery.

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• Unable to connect on socket across different networks.

  - by maleki

  I am having trouble connecting my online application to others across another network. I am able to give them the hostAddress to connect when we are on the same network but when we are doing it across the internet the generated host address doesn't allow a connection, nor does using the ip address gotten from online sites such as whatismyip.com My biggest issue isn't debugging this code, because it works over intra-network but The server doesn't see attempts when we try to move to different networks. Also, the test ip I am using is 2222. InetAddress addr = InetAddress.getLocalHost(); String hostname = addr.getHostName(); System.out.println("Hostname: " + hostname); System.out.println("IP: " + addr.getHostAddress()); I display the host to the server when it is starting if (isClient) { System.out.println("Client Starting.."); clientSocket = new Socket(host, port_number); } else { System.out.println("Server Starting.."); echoServer = new ServerSocket(port_number); clientSocket = echoServer.accept(); System.out.println("Warning, Incoming Game.."); }

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• How to return a recordset from a function

  - by Scott

  I'm building a data access layer in Excel VBA and having trouble returning a recordset. The Execute() function in my class is definitely retrieving a row from the database, but doesn't seem to be returning anything. The following function is contained in a class called DataAccessLayer. The class contains functions Connect and Disconnect which handle opening and closing the connection. Public Function Execute(ByVal sqlQuery as String) As ADODB.recordset Set recordset = New ADODB.recordset Dim recordsAffected As Long ' Make sure we are connected to the database. If Connect Then Set command = New ADODB.command With command .ActiveConnection = connection .CommandText = sqlQuery .CommandType = adCmdText End With ' These seem to be equivalent. 'Set recordset = command.Execute(recordsAffected) recordset.Open command.Execute(recordsAffected) Set Execute = recordset recordset.ActiveConnection = Nothing recordset.Close Set command = Nothing Call Disconnect End If Set recordset = Nothing End Function Here's a public function that I'm using in cell A1 of my spreadsheet for testing. Public Function Scott_Test() Dim Database As New DataAccessLayer 'Dim rs As ADODB.recordset 'Set rs = CreateObject("ADODB.Recordset") Set rs = New ADODB.recordset Set rs = Database.Execute("SELECT item_desc_1 FROM imitmidx_sql WHERE item_no = '11001'") 'rs.Open Database.Execute("SELECT item_desc_1 FROM imitmidx_sql WHERE item_no = '11001'") 'rs.Open ' This never displays. MsgBox rs.EOF If Not rs.EOF Then ' This is displaying #VALUE! in cell A1. Scott_Test = rs!item_desc_1 End If rs.ActiveConnection = Nothing Set rs = Nothing End Function What am I doing wrong?

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• Traversing from Bookmark Hashtags (#bookmark) in jQuery?

  - by HipHop-opatamus

  I am having trouble traversing from a bookmark has tag in jquery. Specifically, the following HTML: <a id="comment-1"></a> <div class="comment"> <h2 class="title"><a href="#comment-1">1st Post</a></h2> <div class="content"> <p>this is 1st reply to the original post</p> </div> <div class="test">1st post second line</div> </div> I am trying to traverse to where the class = "title", if the page is landed on with a bookmark hashtag in the URL (site.com/test.html#comment-1). The following is my code I'm using for testing: if(window.location.hash) { alert ($(window.location.hash).nextAll().html()); } It executes fine, and returns the appropriate html ( The problem is if I add a selector to it ($(window.location.hash).next('.title').html() ) I get a null result. Why is this so? Is nextAll not the correct Traversing function? (I've also tried next+find to no avail) Thanks!

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• Count the prime numbers from 2 to 100 with simpler code than this

  - by RufioLJ

  It has to be with just functions, variables, loops, etc (Basic stuff). I'm having trouble coming up with the code from scratch from what I've I learned so far(Should be able to do it). Makes me really mad :/. If you could give me step by step to make sure I understand I'd really really appreciated. Thanks a bunch in advanced. How could I get the same result with a simpler code than this one: var primes=4; for (var counter = 2; counter <= 100; counter = counter + 1) { var isPrime = 0; if(isPrime === 0){ if(counter === 2){console.log(counter);} else if(counter === 3){console.log(counter);} else if(counter === 5){console.log(counter);} else if(counter === 7){console.log(counter);} else if(counter % 2 === 0){isPrime=0;} else if(counter % 3 === 0){isPrime=0;} else if(counter % 5 === 0){isPrime=0;} else if(counter % 7 === 0){isPrime=0;} else { console.log(counter); primes = primes + 1; } } } console.log("Counted: "+primes+" primes");

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• MVVM- How can I bind to a property, which is not a DependancyProperty?

  - by highone

  I have found this question http://stackoverflow.com/questions/2245928/mvvm-and-the-textboxs-selectedtext-property. However, I am having trouble getting the solution given to work. This is my non-working code: View: SelectedText and Text are just string properties from my ViewModel. <TextBox Text="{Binding Path=Text, UpdateSourceTrigger=PropertyChanged}" Height="155" HorizontalAlignment="Left" Margin="68,31,0,0" Name="textBox1" VerticalAlignment="Top" Width="264" AcceptsReturn="True" AcceptsTab="True" local:TextBoxHelper.SelectedText="{Binding SelectedText, UpdateSourceTrigger=PropertyChanged}" /> <TextBox Text="{Binding SelectedText, Mode=OneWay, UpdateSourceTrigger=PropertyChanged}" Height="154" HorizontalAlignment="Left" Margin="82,287,0,0" Name="textBox2" VerticalAlignment="Top" Width="239" /> TextBoxHelper public static class TextBoxHelper { #region "Selected Text" public static string GetSelectedText(DependencyObject obj) { return (string)obj.GetValue(SelectedTextProperty); } public static void SetSelectedText(DependencyObject obj, string value) { obj.SetValue(SelectedTextProperty, value); } // Using a DependencyProperty as the backing store for SelectedText. This enables animation, styling, binding, etc... public static readonly DependencyProperty SelectedTextProperty = DependencyProperty.RegisterAttached( "SelectedText", typeof(string), typeof(TextBoxHelper), new FrameworkPropertyMetadata(null, FrameworkPropertyMetadataOptions.BindsTwoWayByDefault, SelectedTextChanged)); private static void SelectedTextChanged(DependencyObject obj, DependencyPropertyChangedEventArgs e) { TextBox tb = obj as TextBox; if (tb != null) { if (e.OldValue == null && e.NewValue != null) { tb.SelectionChanged += tb_SelectionChanged; } else if (e.OldValue != null && e.NewValue == null) { tb.SelectionChanged -= tb_SelectionChanged; } string newValue = e.NewValue as string; if (newValue != null && newValue != tb.SelectedText) { tb.SelectedText = newValue as string; } } } static void tb_SelectionChanged(object sender, RoutedEventArgs e) { TextBox tb = sender as TextBox; if (tb != null) { SetSelectedText(tb, tb.SelectedText); } } #endregion } What am I doing wrong?

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• Getting an Android App to Show Up in the market for "Sony Internet TV"(Google TV)

  - by user1291659

  I'm having a bit of trouble getting my app to show up in the market under GoogleTV. I've searched google's official documentation and I don't believe the manifest lists any elements which would invalidate the program; the only hardware requirement specified is landscape mode, wakelock and external storage(neither which should cause it to be filtered for GTV according to the documentation) and I set the uses touchscreen elements "required" attribute to false. below is the AndroidManifest.xml for my project: <?xml version="1.0" encoding="utf-8"?> <manifest xmlns:android="http://schemas.android.com/apk/res/android" package="com.whateversoft" android:versionCode="2" android:versionName="0.1" > <uses-sdk android:minSdkVersion="8" /> <application android:icon="@drawable/ic_launcher" android:label="Color Shafted" android:theme="@style/Theme.NoBackground" android:debuggable="false"> <activity android:label="Color Shafted" android:name=".colorshafted.ColorShafted" android:configChanges = "keyboard|keyboardHidden|orientation" android:screenOrientation = "landscape"> <!-- Set as the default run activity --> <intent-filter > <action android:name="android.intent.action.MAIN" /> <category android:name="android.intent.category.LAUNCHER" /> </intent-filter> </activity> <activity android:label="Color Shafted Settings" android:name=".colorshafted.Settings" android:theme="@android:style/Theme" android:configChanges = "keyboard|keyboardHidden"> <!-- --> </activity> </application> <!-- DEFINE PERMISSIONS FOR CAPABILITIES --> <uses-permission android:name = "android.permission.WRITE_EXTERNAL_STORAGE"/> <uses-permission android:name = "android.permission.WAKE_LOCK"/> <uses-feature android:name="android.hardware.touchscreen" android:required="false" /> <!-- END OF PERMISSIONS FOR CAPABILITIES --> </manifest> I'm about to start promoting the app after the next major release so its been kind of a bummer since I can't seem to get this to work. Any help would be appreciated, thanks in advance : )

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• can't commit or rollback, MySQL out of sync error on .net

  - by sergiogx

  Im having trouble with a stored procedure, I can't commit after I execute it. Its showing this error "[System.Data.Odbc.OdbcException] = {"ERROR [HY000] [MySQL][ODBC 5.1 Driver]Commands out of sync; you can't run this command now"}" The SP by itself works fine. does anyone have idea of what might be happening? .net code: [WebMethod()] [SoapHeader("sesion")] public Boolean aceptarTasaCero(int idMunicipio, double valor) { Boolean resultado = false; OdbcConnection cxn = new OdbcConnection(); cxn.ConnectionString = ConfigurationManager.ConnectionStrings["mysqlConnection"].ConnectionString; cxn.Open(); OdbcCommand cmd = new OdbcCommand("call aceptarTasaCero(?,?)", cxn); cmd.Parameters.Add("idMunicipio", OdbcType.Int).Value = idMunicipio; cmd.Parameters.Add("valor", OdbcType.Double).Value = valor; cmd.Transaction = cxn.BeginTransaction(); try { OdbcDataReader dr = cmd.ExecuteReader(); if (dr.Read()) { resultado = Convert.ToBoolean(dr[0]); } cmd.Transaction.Commit(); } catch (Exception ex) { ExBi.log(ex, sesion.idUsuario); cmd.Transaction.Rollback(); } finally { cxn.Close(); } return resultado; } and this is the code for the stored procedure DELIMITER $$ DROP PROCEDURE IF EXISTS `aceptartasacero` $$ CREATE DEFINER=`database`@`%` PROCEDURE `aceptartasacero`(pidMun INTEGER, pvalor double) BEGIN declare vExito BOOLEAN; INSERT INTO tasacero(anio,valor,idmunicipios) VALUES(YEAR(curdate()),pValor,pidMun); set vExito = true; select vExito; END $$ DELIMITER ; thanks.

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• Attempted to read or write protected memory-Sql Compact and .NEt

  - by Jankhana

  I'm using Sql Compact3.5 as my DB with C# .NET . I have a strange problem with my application. I'm running the code in two PC with same configuration except the Sql Compact installed. In one PC where Sql Compact3.5 is not installed I'm getting this strange error: Exception :Attempted to read or write protected memory. This is often an indication that other memory is corrupt. Inner Exception : Stack Trace : at System.Data.SqlServerCe.NativeMethods.CloseStore(IntPtr pSeStore) at System.Data.SqlServerCe.SqlCeConnection.ReleaseNativeInterfaces() at System.Data.SqlServerCe.SqlCeConnection.Dispose(Boolean disposing) at System.Data.SqlServerCe.SqlCeConnection.Finalize() Source : System.Data.SqlServerCe I don't know where i have went wrong. I checked my code and included try catch everywhere. I'm handling Unhandled exception also using this . I am getting this error from a console application which I'm starting from Windows Form. In both the application I've inserted the Unhandled Exception coding and it's getting executed and getting return to the texxt file. But still Microsoft Don't Error Report is getting generated and I get that Dialog box!!! Y still that dialog box is getting generated is the trouble!!! Is there any way to supress that Dialog box??? Y I'm getting this box when I'm handling the exception and it's executing my catch handler??? In another PC where SQL Compact is installed no error I get!!! Any idea y is that so???

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• Problems referencing build output from TFS Build and Visual Studio

  - by pmdarrow

  Here's what I'm trying to do: I have two solutions - one for my main application and its associated projects and another for my database (VS .dbproj) and its associated projects. What I'd like to do is include the output from the database project (a .dbschema and some SQL scripts) in my WiX installer (which exists in the main application solution.) This involves having TFS build the DB solution immediately before the main application solution. I've got that part working properly, but I'm having trouble referencing the output of the DB solution from my installer. I'm using relative paths to reference the DB project output in my WiX installer (e.g. <?define DBProjectOutputDir = "..\..\MyDatabaseSolution\MyDatabaseProject\sql\"?>) which works fine locally, but fails when building via TFS build. This is because TFS Build apparently changes the output dir of each project to one common location. Instead of the path to my database project being ..\..\MyDatabaseSolution\MyDatabaseProject\sql\ like it is when building locally, it gets set to something like ..\..\..\Binaries\Release\. How can I get around this and have a consistent output location to reference from my installer project? I'm using TFS 2005 and VS 2008.

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• How do I scrape information off ASP.NET websites when paging and JavaScript links are being used?

  - by Ian Roke

  I have been given a staff list which is supposed to be up to date but it doesn't match an intranet People Finder which is written in ASP.NET. As the information is sensitive I am not able to access the database the People Finder is using so the only way I can get at the information is by scraping the structure starting at the top brass at the top and then going through each tier in turn. Each person has a Staff number which then forms the URL http://intranet/peoplefinder/index.aspx?srn=ABC1234 and then all the people who report to them are listed underneth in the format <a id="gvEmployees_ctl03_lnkFullName" href="index.aspx?srn=ABC4321" target="_self"> where each URL indicates the Staff number and provides a link to their team. The trouble arises when the teams are big as paging is implemented in the GridView with an URL such as <a href="javascript:__doPostBack('gvEmployees','Page$2')">2</a>. How would I scrape this page, capture the SRN and other details along with the people who report to the person on all pages of the GridView then loop through each reportee and do the same process until the whole list is complete?

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• rs232 communication, general timing question

  - by Sunny Dee

  Hi, I have a piece of hardware which sends out a byte of data representing a voltage signal at a frequency of 100Hz over the serial port. I want to write a program that will read in the data so I can plot it. I know I need to open the serial port and open an inputstream. But this next part is confusing me and I'm having trouble understanding the process conceptually: I create a while loop that reads in the data from the inputstream 1 byte at a time. How do I get the while loop timing so that there is always a byte available to be read whenever it reaches the readbyte line? I'm guessing that I can't just put a sleep function inside the while loop to try and match it to the hardware sample rate. Is it just a matter of continuing reading the inputstream in the while loop, and if it's too fast then it won't do anything (since there's no new data), and if it's too slow then it will accumulate in the inputstream buffer? Like I said, i'm only trying to understand this conceptually so any guidance would be much appreciated! I'm guessing the idea is independent of which programming language I'm using, but if not, assume it is for use in Java. Thanks!

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• Subscription Based Billing

  - by regex

  Hello All, I'm putting together a small start up company which will be set up with a subscription based billing model. The bill will go to customers on either a monthly or quarterly basis depending on the end user's preference. My question is two parted: I'm new to online billing and I'm only really aware of Pay Pal when it comes to third party bill payment, but this seems more like a check out system. I'm sure there are better alternatives than PayPal for third party billing processors (I have tried Googling for them, but I'm having trouble finding exactly what I'm looking for). What options (companies) are available for third party payment processing and what types of experiences (good or bad) have you had with them? We would like to give our customers the ability to set up recurring payments. I'd rather not store a customer's credit card number on our database as I imagine there are a plethora of compliance guidelines around this. Is there a third party solution for recurring payment processing? On a side note, this is not necessarily a code related question and is more business focused. I wasn't sure if there was a better route for posting this question, and please commont or modify this if there is another route I should take. Thanks!!

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• Inconsistency in modified/created/accessed time on mac

  - by Seth Johnson

  I'm having trouble using os.utime to correctly set the modification time on the mac (Mac OS X 10.6.2, running Python 2.6.1 from /usr/bin/python). It's not consistent with the touch utility, and it's not consistent with the properties displayed in the Finder's "get info" window. Consider the following command sequence. The 'created' and 'modified' times in the plain text refer to the "get info" window attributes. As a reminder, os.utime takes arguments (filename, (atime, mtime)). >>> import os >>> open('tempfile','w').close() 'created' and 'modified' are both the current time. >>> os.utime('tempfile', (1000000000, 1500000000) ) 'created' is the current time, 'modified' is July 13, 2017. >>> os.utime('tempfile', (1000000000, 1000000000) ) 'created' and 'modified' are both September 8, 2001. >>> os.path.getmtime('tempfile') 1000000000.0 >>> os.path.getctime('tempfile') 1269021939.0 >>> os.path.getatime('tempfile') 1269021951.0 ...but the os.path.get?time and os.stat don't reflect it. >>> os.utime('tempfile', (1500000000, 1000000000) ) 'created' and 'modified' are still both September 8, 2001. >>> os.utime('tempfile', (1500000000, 1500000000) ) 'created' is September 8, 2001, 'modified' is July 13, 2017. I'm not sure if this is a Python problem or a Mac stat problem. When I exit the Python shell and run touch -a -t 200011221234 tempfile neither the modification nor the creation times are changed, as expected. Then I run touch -m -t 200011221234 tempfile and both 'created' and 'modified' times are changed. Does anyone have any idea what's going on? How do I change the modification and creation times consistently on the mac? (Yes, I am aware that on Unixy systems there is no "creation time.")

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• Comparing values from a string in a MySQL query

  - by bellesebastien

  I'm having some trouble comparing values found in VARCHAR fields. I have a table with products and each product has volume. I store the volume in a VARCHAR field and it's usually a number (30, 40, 200..) but there are products that have multiple volumes and their data is stored separated by semicolons, like so 30;60;80. I know that storing multiple volumes like that is not recommended but I have to work with it like it is. I'm trying to implement a search by volume function for the products. I want to also display the products that have a bigger or equal volume than the one searched. This is not a problem with the products that have a single volume, but it is a problem with the multiple volume products. Maybe an example will make things clearer: Let's say I have a product with this in it's volume field: 30;40;70;80. If someone searched for a volume, lets say 50, I want that product to be displayed. To do this I was thinking of writing my own custom MySQL function (I've never this before) but maybe someone can offer a different solution. I apologize for my poor English but I hope I made my question clear. Thanks.

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• Running another process without GUI freezing

  - by Adam

  I'm having trouble getting my GUI to appear and not freeze while running (and waiting for) an outside process. In this case, drivers.exe is a very simply program where the user simply clicks "OK". So whenever I click OK, it exits. I am trying to simply make my status strip count numbers up (really fast) as drivers.exe is executing. But in practice, my GUI never appears at all until drivers.exe exits. private void run_drivers() { Console.WriteLine("Start Driver"); int driver_timeout_in_minutes = 20; System.Diagnostics.Process driverproc = System.Diagnostics.Process.Start(Application.StartupPath + "\\" + "drivers.exe"); driverproc.WaitForExit(driver_timeout_in_minutes * 1000 * 60); //uses milliseconds, we must convert } private void Form1_Load(object sender, EventArgs e) { ThreadStart worker = new ThreadStart(run_drivers); Console.WriteLine("Main - Creating worker thread"); toolStripStatusLabel1.Text = "hi"; Thread t = new Thread(worker); t.IsBackground = true; t.Start(); Console.WriteLine("Main - Have requested the start of worker thread"); int i = 0; while (t.IsAlive) { i++; toolStripStatusLabel1.Text = i.ToString(); } Console.WriteLine("Dead"); }

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• R + Bioconductor : combining probesets in an ExpressionSet

  - by Mike Dewar

  Hi, First off, this may be the wrong Forum for this question, as it's pretty darn R+Bioconductor specific. Here's what I have: library('GEOquery') GDS = getGEO('GDS785') cd4T = GDS2eSet(GDS) cd4T <- cd4T[!fData(cd4T)$symbol == "",] Now cd4T is an ExpressionSet object which wraps a big matrix with 19794 rows (probesets) and 15 columns (samples). The final line gets rid of all probesets that do not have corresponding gene symbols. Now the trouble is that most genes in this set are assigned to more than one probeset. You can see this by doing gene_symbols = factor(fData(cd4T)$Gene.symbol) length(gene_symbols)-length(levels(gene_symbols)) [1] 6897 So only 6897 of my 19794 probesets have unique probeset - gene mappings. I'd like to somehow combine the expression levels of each probeset associated with each gene. I don't care much about the actual probe id for each probe. I'd like very much to end up with an ExpressionSet containing the merged information as all of my downstream analysis is designed to work with this class. I think I can write some code that will do this by hand, and make a new expression set from scratch. However, I'm assuming this can't be a new problem and that code exists to do it, using a statistically sound method to combine the gene expression levels. I'm guessing there's a proper name for this also but my googles aren't showing up much of use. Can anyone help?

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• Google's Oauth for Installed apps vs. Oauth for Web Apps

  - by burgerguy

  So I'm having trouble understanding something... If you do Oauth for Web Apps, you register your site with a callback URL and get a unique consumer secret key. But once you've obtained an Oauth for Web Apps token, you don't have to generate Oauth calls to the google server from your registered domain. I regularly use my key and token from scripts running via an apache server at localhost on my laptop and Google never says "you're not sending this request from the registered domain." It just sends me the data. Now, as I understand it, if you do Oauth for Installed Apps, you use "anonymous" instead of a secret key you got from Google. I've been thinking of just using the OAuth for Web Apps auth method, then passing that token to an installed app that has my secret code embedded in its innards. The worry is that the code could be discovered by bad people. But what's more secure... making them work for the secret code or letting them default to anonymous? What really goes bad if the "secret" is discovered when the alternative is using "anonymous" as the secret?

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• import problem with twisted.web server

  - by Carson Myers

  I'm just getting started with twisted.web, and I'm having trouble importing a Python module into a .rpy script. in C:\py\twisted\mysite.py, I have this: from twisted.web.resource import Resource from twisted.web import server class MySite(Resource): def render_GET(self, request): request.write("<!DOCTYPE html>") request.write("<html><head>") request.write("<title>Twisted Driven Site</title>") request.write("</head><body>") request.write("<h1>Twisted Driven Website</h1>") request.write("<p>Prepath: <pre>{0}</pre></p>".format(request.prepath)) request.write("</body></html>") request.finish() return server.NOT_DONE_YET and in C:\py\twisted\index.rpy, I have this: import mysite reload(mysite) resource = mysite.MySite() I ran twistd -n web --port 8888 --path C:\py\twisted in command prompt and the server started successfully. But when I requested localhost:8888 I got a (huge) stack trace originating from an ImportError: <type 'exceptions.ImportError'>: No module named mysite I can import the module from the interpreter, and if i just execute index.rpy as a python script, I don't get the import error. The documentation on this subject is a bit vague, it just says "However, it is often a better idea to define Resource subclasses in Python modules. In order for changes in modules to be visible, you must either restart the Python process, or reload the module:" (from here). Does anyone know the proper way to do this?

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• Mimic remote API or extend existing django model

  - by drozzy

  I am in a process of designing a client for a REST-ful web-service. What is the best way to go about representing the remote resource locally in my django application? For example if the API exposes resources such as: List of Cars Car Detail Car Search Dealership summary So far I have thought of two different approaches to take: Try to wrangle the django's models.Model to mimic the native feel of it. So I could try to get some class called Car to have methods like Car.objects.all() and such. This kind of breaks down on Car Search resources. Implement a Data Access Layer class, with custom methods like: Car.get_all() Car.get(id) CarSearch.search("blah") So I will be creating some custom looking classes. Has anyone encoutered a similar problem? Perhaps working with some external API's (i.e. twitter?) Any advice is welcome. PS: Please let me know if some part of question is confusing, as I had trouble putting it in precise terms.

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• Designing bayesian networks

  - by devoured elysium

  I have a basic question about Bayesian networks. Let's assume we have an engine, that with 1/3 probability can stop working. I'll call this variable ENGINE. If it stops working, then your car doesn't work. If the engine is working, then your car will work 99% of the time. I'll call this one CAR. Now, if your car is old(OLD), instead of not working 1/3 of the time, your engine will stop working 1/2 of the time. I'm being asked to first design the network and then assign all the conditional probabilities associated with the table. I'd say the diagram of this network would be something like OLD -> ENGINE -> CAR Now, for the conditional probabilities tables I did the following: OLD |ENGINE ------------ True | 0.50 False | 0.33 and ENGINE|CAR ------------ True | 0.99 False | 0.00 Now, I am having trouble about how to define the probabilities of OLD. In my point of view, old is not something that has a CAUSE relationship with ENGINE, I'd say it is more a characteristic of it. Maybe there is a different way to express this in the diagram? If the diagram is indeed correct, how would I go to make the tables? Thanks

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• Multiple user roles in Ruby on Rails

  - by aguynamedloren

  I am building an inventory management application with four different user types: admin, employee, manufacturer, transporter. I haven't started coding yet, but this is what I'm thinking.. Manufacturers and transporters are related with has_many :through many-to-many association with products as follows: class Manufacturer < ActiveRecord::Base has_many :products has_many :transporters, :through => :products end class Product < ActiveRecord::Base belongs_to :manufacturer belongs_to :transporter end class Transporter < ActiveRecord::Base has_many :products has_many :manufacturers, :through => :products end All four user types will be able to login, but they will have different permissions and views, etc. I don't think I can put them in the same table (Users), however, because they will have different requirements, ie: vendors and manufacturers must have a billing address and contact info (through validations), but admins and employees should not have these fields. If possible, I would like to have a single login screen as opposed to 4 different screens. I'm not asking for the exact code to build this, but I'm having trouble determining the best way to make it happen. Any ideas would be greatly appreciated - thanks!

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