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• e2fsck extremely slow, although enough memory exists

  - by kaefert

  I've got this external USB-Disk: kaefert@blechmobil:~$ lsusb -s 2:3 Bus 002 Device 003: ID 0bc2:3320 Seagate RSS LLC As can be seen in this dmesg output, there is some problem that prevents that disk from beeing mounted: kaefert@blechmobil:~$ dmesg ... [ 113.084079] usb 2-1: new high-speed USB device number 3 using ehci_hcd [ 113.217783] usb 2-1: New USB device found, idVendor=0bc2, idProduct=3320 [ 113.217787] usb 2-1: New USB device strings: Mfr=2, Product=3, SerialNumber=1 [ 113.217790] usb 2-1: Product: Expansion Desk [ 113.217792] usb 2-1: Manufacturer: Seagate [ 113.217794] usb 2-1: SerialNumber: NA4J4N6K [ 113.435404] usbcore: registered new interface driver uas [ 113.455315] Initializing USB Mass Storage driver... [ 113.468051] scsi5 : usb-storage 2-1:1.0 [ 113.468180] usbcore: registered new interface driver usb-storage [ 113.468182] USB Mass Storage support registered. [ 114.473105] scsi 5:0:0:0: Direct-Access Seagate Expansion Desk 070B PQ: 0 ANSI: 6 [ 114.474342] sd 5:0:0:0: [sdb] 732566645 4096-byte logical blocks: (3.00 TB/2.72 TiB) [ 114.475089] sd 5:0:0:0: [sdb] Write Protect is off [ 114.475092] sd 5:0:0:0: [sdb] Mode Sense: 43 00 00 00 [ 114.475959] sd 5:0:0:0: [sdb] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA [ 114.477093] sd 5:0:0:0: [sdb] 732566645 4096-byte logical blocks: (3.00 TB/2.72 TiB) [ 114.501649] sdb: sdb1 [ 114.502717] sd 5:0:0:0: [sdb] 732566645 4096-byte logical blocks: (3.00 TB/2.72 TiB) [ 114.504354] sd 5:0:0:0: [sdb] Attached SCSI disk [ 116.804408] EXT4-fs (sdb1): ext4_check_descriptors: Checksum for group 3976 failed (47397!=61519) [ 116.804413] EXT4-fs (sdb1): group descriptors corrupted! ... So I went and fired up my favorite partition manager - gparted, and told it to verify and repair the partition sdb1. This made gparted call e2fsck (version 1.42.4 (12-Jun-2012)) e2fsck -f -y -v /dev/sdb1 Although gparted called e2fsck with the "-v" option, sadly it doesn't show me the output of my e2fsck process (bugreport https://bugzilla.gnome.org/show_bug.cgi?id=467925 ) I started this whole thing on Sunday (2012-11-04_2200) evening, so about 48 hours ago, this is what htop says about it now (2012-11-06-1900): PID USER PRI NI VIRT RES SHR S CPU% MEM% TIME+ Command 3704 root 39 19 1560M 1166M 768 R 98.0 19.5 42h56:43 e2fsck -f -y -v /dev/sdb1 Now I found a few posts on the internet that discuss e2fsck running slow, for example: http://gparted-forum.surf4.info/viewtopic.php?id=13613 where they write that its a good idea to see if the disk is just that slow because maybe its damaged, and I think these outputs tell me that this is not the case in my case: kaefert@blechmobil:~$ sudo hdparm -tT /dev/sdb /dev/sdb: Timing cached reads: 3562 MB in 2.00 seconds = 1783.29 MB/sec Timing buffered disk reads: 82 MB in 3.01 seconds = 27.26 MB/sec kaefert@blechmobil:~$ sudo hdparm /dev/sdb /dev/sdb: multcount = 0 (off) readonly = 0 (off) readahead = 256 (on) geometry = 364801/255/63, sectors = 5860533160, start = 0 However, although I can read quickly from that disk, this disk speed doesn't seem to be used by e2fsck, considering tools like gkrellm or iotop or this: kaefert@blechmobil:~$ iostat -x Linux 3.2.0-2-amd64 (blechmobil) 2012-11-06 _x86_64_ (2 CPU) avg-cpu: %user %nice %system %iowait %steal %idle 14,24 47,81 14,63 0,95 0,00 22,37 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await r_await w_await svctm %util sda 0,59 8,29 2,42 5,14 43,17 160,17 53,75 0,30 39,80 8,72 54,42 3,95 2,99 sdb 137,54 5,48 9,23 0,20 587,07 22,73 129,35 0,07 7,70 7,51 16,18 2,17 2,04 Now I researched a little bit on how to find out what e2fsck is doing with all that processor time, and I found the tool strace, which gives me this: kaefert@blechmobil:~$ sudo strace -p3704 lseek(4, 41026998272, SEEK_SET) = 41026998272 write(4, "\212\354K[_\361\3nl\212\245\352\255jR\303\354\312Yv\334p\253r\217\265\3567\325\257\3766"..., 4096) = 4096 lseek(4, 48404766720, SEEK_SET) = 48404766720 read(4, "\7t\260\366\346\337\304\210\33\267j\35\377'\31f\372\252\ffU\317.y\211\360\36\240c\30`\34"..., 4096) = 4096 lseek(4, 41027002368, SEEK_SET) = 41027002368 write(4, "\232]7Ws\321\352\t\1@[+5\263\334\276{\343zZx\352\21\316`1\271[\202\350R`"..., 4096) = 4096 lseek(4, 48404770816, SEEK_SET) = 48404770816 read(4, "\17\362r\230\327\25\346//\210H\v\311\3237\323K\304\306\361a\223\311\324\272?\213\tq \370\24"..., 4096) = 4096 lseek(4, 41027006464, SEEK_SET) = 41027006464 write(4, "\367yy>x\216?=\324Z\305\351\376&\25\244\210\271\22\306}\276\237\370(\214\205G\262\360\257#"..., 4096) = 4096 lseek(4, 48404774912, SEEK_SET) = 48404774912 read(4, "\365\25\0\21|T\0\21}3t_\272\373\222k\r\177\303\1\201\261\221$\261B\232\3142\21U\316"..., 4096) = 4096 ^CProcess 3704 detached around 16 of these lines every second, so 4 read and 4 write operations every second, which I don't consider to be a lot.. And finally, my question: Will this process ever finish? If those numbers from fseek (48404774912) represent bytes, that would be something like 45 gigabytes, with this beeing a 3 terrabyte disk, which would give me 134 days to go, if the speed stays constant, and e2fsck scans the disk like this completly and only once. Do you have some advice for me? I have most of the data on that disk elsewhere, but I've put a lot of hours into sorting and merging it to this disk, so I would prefer to getting this disk up and running again, without formatting it anew. I don't think that the hardware is damaged since the disk is only a few months and since I can't see any I/O errors in the dmesg output. UPDATE: I just looked at the strace output again (2012-11-06_2300), now it looks like this: lseek(4, 1419860611072, SEEK_SET) = 1419860611072 read(4, "3#\f\2447\335\0\22A\355\374\276j\204'\207|\217V|\23\245[\7VP\251\242\276\207\317:"..., 4096) = 4096 lseek(4, 43018145792, SEEK_SET) = 43018145792 write(4, "]\206\231\342Y\204-2I\362\242\344\6R\205\361\324\177\265\317C\334V\324\260\334\275t=\10F."..., 4096) = 4096 lseek(4, 1419860615168, SEEK_SET) = 1419860615168 read(4, "\262\305\314Y\367\37x\326\245\226\226\320N\333$s\34\204\311\222\7\315\236\336\300TK\337\264\236\211n"..., 4096) = 4096 lseek(4, 43018149888, SEEK_SET) = 43018149888 write(4, "\271\224m\311\224\25!I\376\16;\377\0\223H\25Yd\201Y\342\r\203\271\24eG<\202{\373V"..., 4096) = 4096 lseek(4, 1419860619264, SEEK_SET) = 1419860619264 read(4, ";d\360\177\n\346\253\210\222|\250\352T\335M\33\260\320\261\7g\222P\344H?t\240\20\2548\310"..., 4096) = 4096 lseek(4, 43018153984, SEEK_SET) = 43018153984 write(4, "\360\252j\317\310\251G\227\335{\214`\341\267\31Y\202\360\v\374\307oq\3063\217Z\223\313\36D\211"..., 4096) = 4096 So the numbers in the lseek lines before the reads, like 1419860619264 are already a lot bigger, standing for 1.29 terabytes if those numbers are bytes, so it doesn't seem to be a linear progress on a big scale, maybe there are only some areas that need work, that have big gaps in between them. UPDATE2: Okey, big disappointment, the numbers are back to very small again (2012-11-07_0720) lseek(4, 52174548992, SEEK_SET) = 52174548992 read(4, "\374\312\22\\\325\215\213\23\0357U\222\246\370v^f(\312|f\212\362\343\375\373\342\4\204mU6"..., 4096) = 4096 lseek(4, 46603526144, SEEK_SET) = 46603526144 write(4, "\370\261\223\227\23?\4\4\217\264\320_Am\246CQ\313^\203U\253\274\204\277\2564n\227\177\267\343"..., 4096) = 4096 so either e2fsck goes over the data multiple times, or it just hops back and forth multiple times. Or my assumption that those numbers are bytes is wrong. UPDATE3: Since it's mentioned here http://forums.fedoraforum.org/showthread.php?t=282125&page=2 that you can testisk while e2fsck is running, i tried that, though not with a lot of success. When asking testdisk to display the data of my partition, this is what I get: TestDisk 6.13, Data Recovery Utility, November 2011 Christophe GRENIER <[email protected]> http://www.cgsecurity.org 1 P Linux 0 4 5 45600 40 8 732566272 Can't open filesystem. Filesystem seems damaged. And this is what strace currently gives me (2012-11-07_1030) lseek(4, 212460343296, SEEK_SET) = 212460343296 read(4, "\315Mb\265v\377Gn \24\f\205EHh\2349~\330\273\203\3375\206\10\r3=W\210\372\352"..., 4096) = 4096 lseek(4, 47347830784, SEEK_SET) = 47347830784 write(4, "]\204\223\300I\357\4\26\33+\243\312G\230\250\371*m2U\t_\215\265J \252\342Pm\360D"..., 4096) = 4096 (times are in CET)

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• ksh: assigning function output to an array

  - by rcarson

  Why doesn't this work??? #!/bin/ksh # array testfunc() function testfunc { typeset -A env env=( one="motherload" ) print -r $env return 0 } testfunc # returns: ( one=motherload ) typeset -A testvar # segfaults on linux, memfaults on solaris testvar=$(testfunc) # segfaults on linux, memfaults on solaris print -r $testvar I am sure this has been asked before, but I am not sure what to search on and everything I have been trying to use for keywords is not bringing me any answers that relate to my problem.

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• Prevent * to be expanded in the bash script

  - by Alex Farber

  Linux bash script: #!/bin/bash function Print() { echo $1 } var="*" Print $var Execution results: alex@alex-linux:~/tmp$ ./sample-script sample-script "*" is expanded to the list of files, which is actually script itself. How can I prevent this and see actual variable value? In general case, var can be more complicated than "*", for example: "home/alex/mydir/*".

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• Restoring/Restarting a java daemon from crash

  - by Ashish

  Hello, I am running a java app as daemon on a linux machine using a customized shell script. Since I am new to java and linux, I want to know is it possible that the app itself resurrects itself(just like restart) and recovers from cases like app crashing, unhandled exceptions or out of memory etc. thanks in advance Ashish Sharma

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• Display contents of a file in the parent directory

  - by Sharjeel Sayed

  I have a command which lists Weblogic instances directories on a server.I want to display contents of a file in the parent directory of each directory listed. An additional feature would be to display the name of the file in addition to displaying the contents /usr/ucb/ps auwwx | grep weblogic | tr ' ' '\n' | grep security.policy | grep domain | awk -F'=' '{print $2}' | sed -e 's/weblogic.policy//' -e 's/security\///' | sort The output of the above command looks like this /opt/<some_directory>/<domain_name>/<app_name>/ /opt/<some_directory>/<domain_name>/<app_name>/ I want to cat a file somefile.cf in the directory

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• Kill proccess after some time

  - by yael

  I want to limit the time of grep process command For example If I perform: grep -qsRw -m1 "parameter" /var before running grep command I want to limit the grep process to alive not longer then 30 seconds how to do this? and if it can be how to return the no limit time again Yael

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• Any porting available of backtrace for uclibc?

  - by user303967

  We are running the uclibc linux on ARM 9. The problem is uclibc doesn't support backtrace. When a core dump happens, I cannot grab the call stack. Does anyone have a good solution for that? For example, an existing porting of backtrace for uclibc, or any good method to grab the call stack when a core dump happens (uclibc+ARM+Linux)?

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• convert dos/windows newline to unix newline in bash script

  - by Koran Molovik

  I bash, how do I convert dos/windows newlines to unix? It must be non-interactive, not like starting vi and typing something in, but a command on the command line that can be put in a script file. The dos2unix and unix2dos commands are not available on the system. How do I do this with commands like sed/awk/tr?

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• Any porting avaiable of backtrace for uclibc?

  - by user303967

  We are running the uclibc linux on ARM 9. The problem is uclibc doesn't support backtrace. When core-dump happen, cannot grap the call stack. Anyone has good solution on that? For example, an existing porting of backtrace for uclibc? or any good method to grap call stack when call dump happen(uclibc+ARM+Linux)? thanks

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• lighttpd start/stop/restart script doesn't work

  - by Claudiu

  Hi, I want to restart lighttpd using */lighttpd restart command, but nothing happens, no message, error, just a new cli line waiting for command. I've examined lighttpd file and lighttpd.conf and they seem to be ok.. What should I do more ?

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• How to convert dos/windows newline to unix newline in bash script?

  - by Koran Molovik

  I bash, how do I convert dos/windows newlines to unix? It must be non-interactive, not like starting vi and typing something in, but a command on the command line that can be put in a script file. The dos2unix and unix2dos commands are not available on the system. How do I do this with commands like sed/awk/tr?

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• Fortran bus error on mac

  - by SteveJ

  The following Fortran code is giving me a bus error on my Mac but no errors when I run it on my Linux machine: PROGRAM TINY WRITE(UNIT=*, FMT=*) 'Hello, world!' END My understanding is that a bus error occurs when the program attempts to access impossible memory but I do not understand where such an attempt has been made in this program. My MacBook has GCC 4.4.0 and my Linux machine has GCC 4.3.2. Any ideas as to why this error occurs?

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• How do I change bash history completion to complete what's already on the line?

  - by blokkie

  I found a command a couple of months ago that made my bash history auto-complete on what's already on the line when pressing the up arrow: $ vim fi Press ? $ vim file.py I'd like to set this up on my new computer, because it saves a lot of time when keeping a big history. The problem is that I can't for the life of me remember where it was mentioned and reading through endless bash references and tutorials unfortunately didn't help either. Does anybody know the command?

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• grep + add time out after some time if not find the relevant match

  - by yael

  Dear friends I use the following command syntax to search params in my script grep -qsRw -m1 "any_param" /dir/..../ Some times the search take avery long time The question is how to add time out to grep command For example after 20 seconds grep will break out If it not illegal to add time out to grep , how it will possible on other way? THX Yael

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• Reliable UDP

  - by suresh

  How can I develop a Linux kernel module in order to make UDP reliable? This is my college assignment and I don't how to proceed. how to do change the default UDP behaviour in linux kernel by loading a new kernel module? and how to program such kernel module?

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• How can I setup my Netbeans IDE for making Jave ME applications?

  - by Sergio Tapia

  Ok, I have Netbeans 6.7.1 installed with the default Java SDK. I'm using Linux Mint. Now I'm told that I have to download Java Platform Micro Edition Software Development Kit 3.0 So, should I download this? And once I download and install this in Linux, what do I have to install for Netbeans so I can create a Mobile Application? I'm fairly new to this environment so please any advice is welcome! :)

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• how to make sure the OS can recognize my modem ?? [closed]

  - by Raafat

  Warning ... novice Linux user problem right here ... my modem is Actiotec MDC AC'97 Modem v2132D, how can i be sure that it's a software or a hardware one??, also how can i be sure that it's working on my OS??, or my OS can recognize it or not??, I'm using Linux Debian 5.0, with KDE thanx in advanced ... Raafat

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• Why is ARG_MAX not defined via limits.h?

  - by Josh Matthews

  On Fedora Core 7, I'm writing some code that relies on ARG_MAX. However, even if I #include <limits.h>, the constant is still not defined. My investigations show that it's present in <sys/linux/limits.h>, but this is supposed to be portable across Win32/Mac/Linux, so directly including it isn't an option. What's going on here?

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• Is there a guide to debugging Java processes in Eclipse across OSs?

  - by Jekke

  I have an application written in Java to run on Linux. I'm developing in Eclipse under windows. I would like to run the code on the Linux box and debug it on the Windows one remotely. I've found some information about how to do so, but it's pretty sparse. Does anyone have (or can point to) a complete explanation of the process? Any help would be appreciated.

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• undo continually vi

  - by wowrt

  Hi, I am using vi(not Vim) and I would like to continually undo the changes made. u works for a single command undo and Ufor a single line undo. But Is there a way to undo continuously like vim(I recall a command in vim can even undo changes by time!) in vi? Thanks in Advance.

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• What is a lightweight cross platform WAV playing library?

  - by Lokkju

  I'm looking for a lightweight way to make my program (written in C) be able to play audio files on either windows or linux. I am currently using windows native calls, which is essentially just a single call that is passed a filename. I would like something similar that works on linux. The audio files are Microsoft PCM, Single channel, 22Khz Any Suggestions?

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• Creating a wine static executable?

  - by asdf

  Hi, I have some windows command line applications, in binary form (I do not have the source code) which I use frequently. Sometimes I need to run them in Linux machines, and it works perfectly under wine (wine is not an emulator). The problem I'm facing now is that I need to work on a cluster which has not wine installed on it. I wonder if it is possible to create in another similar linux machine kind of a static executable or so, so i can run this windows program on the cluster Thanks

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• How can a C/C++ program put itself into background?

  - by Larry Gritz

  What's the best way for a running C or C++ program that's been launched from the command line to put itself into the background, equivalent to if the user had launched from the unix shell with '&' at the end of the command? (But the user didn't.) It's a GUI app and doesn't need any shell I/O, so there's no reason to tie up the shell after launch. But I want a shell command launch to be auto-backgrounded without the '&' (or on Windows). Ideally, I want a solution that would work on any of Linux, OS X, and Windows. (Or separate solutions that I can select with #ifdef.) It's ok to assume that this should be done right at the beginning of execution, as opposed to somewhere in the middle. One solution is to have the main program be a script that launches the real binary, carefully putting it into the background. But it seems unsatisfying to need these coupled shell/binary pairs. Another solution is to immediately launch another executed version (with 'system' or CreateProcess), with the same command line arguments, but putting the child in the background and then having the parent exit. But this seems clunky compared to the process putting itself into background. Edited after a few answers: Yes, a fork() (or system(), or CreateProcess on Windows) is one way to sort of do this, that I hinted at in my original question. But all of these solutions make a SECOND process that is backgrounded, and then terminate the original process. I was wondering if there was a way to put the EXISTING process into the background. One difference is that if the app was launched from a script that recorded its process id (perhaps for later killing or other purpose), the newly forked or created process will have a different id and so will not be controllable by any launching script, if you see what I'm getting at. Edit #2: fork() isn't a good solution for OS X, where the man page for 'fork' says that it's unsafe if certain frameworks or libraries are being used. I tried it, and my app complains loudly at runtime: "The process has forked and you cannot use this CoreFoundation functionality safely. You MUST exec()." I was intrigued by daemon(), but when I tried it on OS X, it gave the same error message, so I assume that it's just a fancy wrapper for fork() and has the same restrictions. Excuse the OS X centrism, it just happens to be the system in front of me at the moment. But I am indeed looking for a solution to all three platforms.

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• How can I persuade our team to use mac as our development platform?

  - by Allen Bargi

  I'm joining a start up and there's a debate on which platform we should choose for our development; Mac, Linux or Windows? We're gonna use mainly open source tools and languages like, ruby, rails, PHP and mysql and photoshop (or something equivalent on Linux) for design. I suggested mac but they challenged me to be more persuasive. what's your idea? Help me with your persuasive arguments please.

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• Bash:Redirection Halts

  - by user365828

  I have a command e.g. ls-l file.txt When there is insufficient space on my drive, the above command just stalls waiting for something to happen. Does anyone know about a code that I could write enabling me to display a message about the lack of space on my drive? E.g. could I use IPC or do you have any other ideas? Thanks in advance.

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