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  • strange chi-square result using scikit_learn with feature matrix

    - by user963386
    I am using scikit learn to calculate the basic chi-square statistics(sklearn.feature_selection.chi2(X, y)): def chi_square(feat,target): """ """ from sklearn.feature_selection import chi2 ch,pval = chi2(feat,target) return ch,pval chisq,p = chi_square(feat_mat,target_sc) print(chisq) print("**********************") print(p) I have 1500 samples,45 features,4 classes. The input is a feature matrix with 1500x45 and a target array with 1500 components. The feature matrix is not sparse. When I run the program and I print the arrray "chisq" with 45 components, I can see that the component 13 has a negative value and p = 1. How is it possible? Or what does it mean or what is the big mistake that I am doing? I am attaching the printouts of chisq and p: [ 9.17099260e-01 3.77439701e+00 5.35004211e+01 2.17843312e+03 4.27047184e+04 2.23204883e+01 6.49985540e-01 2.02132664e-01 1.57324454e-03 2.16322638e-01 1.85592258e+00 5.70455805e+00 1.34911126e-02 -1.71834753e+01 1.05112366e+00 3.07383691e-01 5.55694752e-02 7.52801686e-01 9.74807972e-01 9.30619466e-02 4.52669897e-02 1.08348058e-01 9.88146259e-03 2.26292358e-01 5.08579194e-02 4.46232554e-02 1.22740419e-02 6.84545170e-02 6.71339545e-03 1.33252061e-02 1.69296016e-02 3.81318236e-02 4.74945604e-02 1.59313146e-01 9.73037448e-03 9.95771327e-03 6.93777954e-02 3.87738690e-02 1.53693158e-01 9.24603716e-04 1.22473138e-01 2.73347277e-01 1.69060817e-02 1.10868365e-02 8.62029628e+00] ********************** [ 8.21299526e-01 2.86878266e-01 1.43400668e-11 0.00000000e+00 0.00000000e+00 5.59436980e-05 8.84899894e-01 9.77244281e-01 9.99983411e-01 9.74912223e-01 6.02841813e-01 1.26903019e-01 9.99584918e-01 1.00000000e+00 7.88884155e-01 9.58633878e-01 9.96573548e-01 8.60719653e-01 8.07347364e-01 9.92656816e-01 9.97473024e-01 9.90817144e-01 9.99739526e-01 9.73237195e-01 9.96995722e-01 9.97526259e-01 9.99639669e-01 9.95333185e-01 9.99853998e-01 9.99592531e-01 9.99417113e-01 9.98042114e-01 9.97286030e-01 9.83873717e-01 9.99745466e-01 9.99736512e-01 9.95239765e-01 9.97992843e-01 9.84693908e-01 9.99992525e-01 9.89010468e-01 9.64960636e-01 9.99418323e-01 9.99690553e-01 3.47893682e-02]

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  • Debugging IDAPython Scripts outside of IDAPro

    - by YaronK
    I'm kinda new to scripting for IDA - nevertheless, I've written a complex script I need to debug, as it is not working properly. It is composed of a few different files containing a few different classes. Writing line-by-line in the commandline is not effective for obvious reasons. Running a whole script from the File doesn't allow debugging. Is there a way of using the idc, idautils, idaapi not from within IDA? I've written the script on PyDev for Eclipse, I'm hoping for a way to run the scripts from within it. A similar question is, can the api classes I have mentioned work on idb files without IDA having them loaded? Thanks.

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  • In Elixir or SQLAlchemy, is there a way to also store a comment for a/each field in my entities?

    - by kchau
    Our project is basically a web interface to several systems of record. We have many tables mapped, and the names of each column aren't as well named and intuitive as we'd like... The users would like to know what data fields are available (i.e. what's been mapped from the database). But, it's pointless to just give them column names like: USER_REF1, USER_REF2, etc. So, I was wondering, is there a way to provide a comment in the declaration of my field? E.g. class SegregationCode(Entity): using_options(tablename="SEGREGATION_CODES") segCode = Field(String(20), colname="CODE", ... primary_key=True) #Have a comment attr too? If not, any suggestions?

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  • Search a variable for an address

    - by chrissygormley
    Hello, I am trying to match information stored in a variable. I have a list of uuid's and ip addresses beside them. The code I have is: r = re.compile(r'urn:uuid:5EEF382F-JSQ9-3c45-D5E0-K15X8M8K76') m = r.match(str(serv)) if m1: print'Found' The string serv contains is: urn:uuid:7FDS890A-KD9E-3h53-G7E8-BHJSD6789D:[u'http://10.10.10.20:12365/7FDS890A-KD9E-3h53-G7E8-BHJSD6789D/'] --------------------------------------------- urn:uuid:5EEF382F-JSQ9-3c45-D5E0-K15X8M8K76:[u'http://10.10.10.10:42365'] --------------------------------------------- urn:uuid:8DSGF89S-FS90-5c87-K3DF-SDFU890US9:[u'http://10.10.10.40:5234'] --------------------------------------------- So basically I am wanting to find the uuid string and find out what it's address is and store it as a variable. So far I have just tried to get it to match the string to no avail. Can anyone point out a solution to this. Thanks

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  • Dynamic Spacer in ReportLab

    - by ptikobj
    I'm automatically generating a PDF-file with Platypus that has dynamic content. This means that it might happen that the length of the text content (which is directly at the bottom of the pdf-file) may vary. However, it might happen that a page break is done in cases where the content is too long. This is because i use a "static" spacer: s = Spacer(width=0, height=23.5*cm) as i always want to have only one page, I somehow need to dynamically set the height of the Spacer, so that it takes the "rest" of the space that is on the page as its height. Now, how do i get the "rest" of height that is left on my page?

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  • Copy **kwargs to self?

    - by Mark
    Given class ValidationRule: def __init__(self, **kwargs): # code here Is there a way that I can define __init__ such that if I were to initialize the class with something like ValidationRule(other='email') then self.other would be "added" to class without having to explicitly name every possible kwarg?

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  • Disable autocomplete on textfield in Django?

    - by tau-neutrino
    Does anyone know how you can turn off autocompletion on a textfield in Django? For example, a form that I generate from my model has an input field for a credit card number. It is bad practice to leave autocompletion on. When making the form by hand, I'd add a autocomplete="off" statement, but how do you do it in Django and still retain the form validation?

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  • How do I call setattr() on the current module?

    - by Matt Joiner
    What do I pass as the first parameter "object" to the function setattr(object, name, value), to set variables on the current module? For example: setattr(object, "SOME_CONSTANT", 42); giving the same effect as: SOME_CONSTANT = 42 within the module containing these lines (with the correct object). I'm generate several values at the module level dynamically, and as I can't define __getattr__ at the module level, this is my fallback.

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  • Problem with Replacing special characters in a string

    - by Hossein
    Hi, I am trying to feed some text to a special pupose parser. The problem with this parser is that it is sensitive to ()[] characters and in my sentence in the text have quite a lot of these characters. The manual for the parser suggests that all the ()[] get replaced with \( \) \[ \]. So using str.replace i am using to attach \ to all of those charcaters. I use the code below: a = 'abcdef(1234)' a.replace('(','\(') however i get this as my output: 'abcdef\\(1234)' What is wrong with my code? can anyone provide me a solution to solve this for these characters?

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  • web2py error while using distinct in the queries

    - by Steve
    Hi, I am using web2py with GAE. While using some of the queries which has a distinct clause, GAE throws out an error.I have pasted the Traceback. Can someone please help me out with this. In FILE: /base/data/home/apps/panneersoda/1.341206242889687944/applications/init/controllers/default.py Traceback (most recent call last): File "/base/data/home/apps/panneersoda/1.341206242889687944/gluon/restricted.py", line 173, in restricted exec ccode in environment File "/base/data/home/apps/panneersoda/1.341206242889687944/applications/init/controllers/default.py:profileview", line 263, in <module> File "/base/data/home/apps/panneersoda/1.341206242889687944/gluon/globals.py", line 96, in <lambda> self._caller = lambda f: f() File "/base/data/home/apps/panneersoda/1.341206242889687944/applications/init/controllers/default.py:profileview", line 97, in profileview File "/base/data/home/apps/panneersoda/1.341206242889687944/gluon/contrib/gql.py", line 675, in select (items, tablename, fields) = self._select(*fields, **attributes) File "/base/data/home/apps/panneersoda/1.341206242889687944/gluon/contrib/gql.py", line 624, in _select raise SyntaxError, 'invalid select attribute: %s' % key SyntaxError: invalid select attribute: distinct Thanks

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  • 'NoneType' object has no attribute 'data'

    - by Bill Jordan
    Hello guys, I am sending a SOAP request to my server and getting the response back. sample of the response string is shown below: <?xml version = '1.0' ?> <env:Envelope xmlns:env=http:////www.w3.org/2003/05/soap-envelop . .. .. <env:Body> <epas:get-all-config-resp xmlns:epas="urn:organization:epas:soap"> ^M ... ... <epas:property name="Tom">12</epas:property> > > <epas:property name="Alice">34</epas:property> > > <epas:property name="John">56</epas:property> > > <epas:property name="Danial">78</epas:property> > > <epas:property name="George">90</epas:property> > > <epas:property name="Luise">11</epas:property> ... ^M </env:Body? </env:Envelop> What I noticed in the response is that there is an extra character shown in the body which is "^M". Not sure if this could be the issue. Note the ^M shown! when I tried parsing the string returned from the server to get the names and values using the code sample: elements = minidom.parseString(xmldoc).getElementsByTagName("property") myDict = {} for element in elements: myDict[element.getAttribute('name')] = element.firstChild.data But, I am getting this error: 'NoneType' object has no attribute 'data'. May be its something to do with the "^M" shown on the xml response back! Any ideas/comments would be appreciated, Cheers

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  • Designing a Tag table that tells how many times it's used

    - by Satoru.Logic
    Hi, all. I am trying to design a tagging system with a model like this: Tag: content = CharField creator = ForeignKey used = IntergerField It is a many-to-many relationship between tags and what's been tagged. Everytime I insert a record into the assotication table, Tag.used is incremented by one, and decremented by one in case of deletion. Tag.used is maintained because I want to speed up answering the question 'How many times this tag is used?'. However, this seems to slow insertion down obviously. Please tell me how to improve this design. Thanks in advance.

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  • Matplotlib: plotting discrete values

    - by Arkapravo
    I am trying to plot the following ! from numpy import * from pylab import * import random for x in range(1,500): y = random.randint(1,25000) print(x,y) plot(x,y) show() However, I keep getting a blank graph (?). Just to make sure that the program logic is correct I added the code print(x,y), just the confirm that (x,y) pairs are being generated. (x,y) pairs are being generated, but there is no plot, I keep getting a blank graph. Any help ?

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  • How do I launch background jobs w/ paramiko?

    - by sophacles
    Here is my scenario: I am trying to automate some tasks using Paramiko. The tasks need to be started in this order (using the notation (host, task)): (A, 1), (B, 2), (C, 2), (A,3), (B,3) -- essentially starting servers and clients for some testing in the correct order. Further, because in the tests networking may get mucked up, and because I need some of the output from the tests, I would like to just redirect output to a file. In similar scenarios the common response is to use 'screen -m -d' or to use 'nohup'. However with paramiko's exec_cmd, nohup doesn't actually exit. Using: bash -c -l nohup test_cmd & doesnt work either, exec_cmd still blocks to process end. In the screen case, output redirection doesn't work very well, (actually, doesnt work at all the best I can figure out). So, after all that explanation, my question is: is there an easy elegant way to detach processes and capture output in such a way as to end paramiko's exec_cmd blocking? Update The dtach command works nicely for this!

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  • How to manually create a DBRef using pymongo?

    - by Soviut
    I want to create a DBRef manually so that I can add an additional field to it. However, when I try to pass the following: {'$ref': 'projects', '$id': '1029412409721', 'project_name': 'My Project'} Pymongo raises an error: pymongo.errors.InvalidName: key '$id' must not start with '$' It would seem that pymongo reserve the $ for the special key, leading me to wonder if it is even possible to do what I'm trying to do?

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  • how do simple SQLAlchemy relationships work?

    - by Carson Myers
    I'm no database expert -- I just know the basics, really. I've picked up SQLAlchemy for a small project, and I'm using the declarative base configuration rather than the "normal" way. This way seems a lot simpler. However, while setting up my database schema, I realized I don't understand some database relationship concepts. If I had a many-to-one relationship before, for example, articles by authors (where each article could be written by only a single author), I would put an author_id field in my articles column. But SQLAlchemy has this ForeignKey object, and a relationship function with a backref kwarg, and I have no idea what any of it MEANS. I'm scared to find out what a many-to-many relationship with an intermediate table looks like (when I need additional data about each relationship). Can someone demystify this for me? Right now I'm setting up to allow openID auth for my application. So I've got this: from __init__ import Base from sqlalchemy.schema import Column from sqlalchemy.types import Integer, String class Users(Base): __tablename__ = 'users' id = Column(Integer, primary_key=True) username = Column(String, unique=True) email = Column(String) password = Column(String) salt = Column(String) class OpenID(Base): __tablename__ = 'openid' url = Column(String, primary_key=True) user_id = #? I think the ? should be replaced by Column(Integer, ForeignKey('users.id')), but I'm not sure -- and do I need to put openids = relationship("OpenID", backref="users") in the Users class? Why? What does it do? What is a backref?

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  • SQLAlchemy - how to map against a read-only (or calculated) property

    - by Jeff Peck
    I'm trying to figure out how to map against a simple read-only property and have that property fire when I save to the database. A contrived example should make this more clear. First, a simple table: meta = MetaData() foo_table = Table('foo', meta, Column('id', String(3), primary_key=True), Column('description', String(64), nullable=False), Column('calculated_value', Integer, nullable=False), ) What I want to do is set up a class with a read-only property that will insert into the calculated_value column for me when I call session.commit()... import datetime def Foo(object): def __init__(self, id, description): self.id = id self.description = description @property def calculated_value(self): self._calculated_value = datetime.datetime.now().second + 10 return self._calculated_value According to the sqlalchemy docs, I think I am supposed to map this like so: mapper(Foo, foo_table, properties = { 'calculated_value' : synonym('_calculated_value', map_column=True) }) The problem with this is that _calculated_value is None until you access the calculated_value property. It appears that SQLAlchemy is not calling the property on insertion into the database, so I'm getting a None value instead. What is the correct way to map this so that the result of the "calculated_value" property is inserted into the foo table's "calculated_value" column?

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  • How to replace a Widget with another using Qt ?

    - by Natim
    Hi, I have an QHBoxLayout with a QTreeWidget on the left, a separator on the middle and a widget on the right. When I click on the QTreeWidget, I want to change the widget on the right to modify the QTreeWidgetItem I tried to do this with this code : def new_rendez_vous(self): self.ui.horizontalLayout_4.removeWidget(self.ui.editionFormWidget) del self.ui.editionFormWidget self.ui.editionFormWidget = RendezVousManagerDialog(self.parent) self.ui.editionFormWidget.show() self.ui.horizontalLayout_4.addWidget(self.ui.editionFormWidget) self.connect(self.ui.editionFormWidget, QtCore.SIGNAL('saved'), self.scheduleTreeWidget.updateData) def edit(self, category, rendez_vous): self.ui.horizontalLayout_4.removeWidget(self.ui.editionFormWidget) del self.ui.editionFormWidget self.ui.editionFormWidget = RendezVousManagerDialog(self.parent, category, rendez_vous) self.ui.editionFormWidget.show() self.ui.horizontalLayout_4.addWidget(self.ui.editionFormWidget) self.connect(self.ui.editionFormWidget, QtCore.SIGNAL('saved'), self.scheduleTreeWidget.updateData) def edit_category(self, category): self.ui.horizontalLayout_4.removeWidget(self.ui.editionFormWidget) del self.ui.editionFormWidget self.ui.editionFormWidget = CategoryManagerDialog(self.parent, category) self.ui.editionFormWidget.show() self.ui.horizontalLayout_4.addWidget(self.ui.editionFormWidget) self.connect(self.ui.editionFormWidget, QtCore.SIGNAL('saved'), self.scheduleTreeWidget.updateData) But it doesn't work and all the widgets are stacked up on each other : . Do you know how I can remove the old widget and next display the new one ?

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  • How to turn a list of tuples into a string?

    - by matt
    I have a list of tuples that I'm trying to incorporate into a SQL query but I can't figure out how to join them together without adding slashes. My like this: list = [('val', 'val'), ('val', 'val'), ('val', 'val')] If I turn each tuple into a string and try to join them with a a comma I'll get something like ' (\'val\, \'val\'), ... ' What's the right way to do this, so I can get the list (without brackets) as a string?

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  • Graphics glitch when drawing to a Cairo context obtained from a gtk.DrawingArea inside a gtk.Viewport.

    - by user410023
    I am trying to redraw the part of the DrawingArea that is visible in the Viewport in the expose-event handler. However, it seems that I am doing something wrong with the coordinates that are passed to the event handler because there is garbage at the edge of the Viewport when scrolling. Can anyone tell what I am doing wrong? Here is a small example: import pygtk pygtk.require("2.0") import gtk from numpy import array from math import pi class Circle(object): def init(self, position = [0., 0.], radius = 0., edge = (0., 0., 0.), fill = None): self.position = position self.radius = radius self.edge = edge self.fill = fill def draw(self, ctx): rect = array(ctx.clip_extents()) rect[2] -= rect[0] rect[3] -= rect[1] center = rect[2:4] / 2 ctx.arc(center[0], center[1], self.radius, 0., 2. * pi) if self.fill != None: ctx.set_source_rgb(*self.fill) ctx.fill_preserve() ctx.set_source_rgb(*self.edge) ctx.stroke() class Scene(object): class Proxy(object): directory = {} def init(self, target, layers = set()): self.target = target self.layers = layers Scene.Proxy.directory[target] = self def __init__(self, viewport): self.objects = {} self.layers = [set()] self.viewport = viewport self.signals = {} def draw(self, ctx): x = self.viewport.get_hadjustment().value y = self.viewport.get_vadjustment().value ctx.set_source_rgb(1., 1., 1.) ctx.paint() ctx.translate(x, y) for obj in self: obj.draw(ctx) def add(self, item, layer = 0): item = Scene.Proxy(item, layers = set((layer,))) assert(hasattr(item.target, "draw")) assert(isinstance(layer, int)) item.layers.add(layer) while not layer < len(self.layers): self.layers.append(set()) self.layers[layer].add(item) if not item in self.objects: self.objects[item] = set() self.objects[item].add(layer) def remove(self, item, layers = None): item = Scene.Proxy.directory[item] if layers == None: layers = self.objects[item] for layer in layers: layer.remove(item) item.layers.remove(layer) if len(item.layers) == 0: self.objects.remove(item) def __iter__(self): for layer in self.layers: for item in layer: yield item.target class App(object): def init(self): signals = { "canvas_exposed": self.update_canvas, "gtk_main_quit": gtk.main_quit } self.builder = gtk.Builder() self.builder.add_from_file("graphics_glitch.glade") self.window = self.builder.get_object("window") self.viewport = self.builder.get_object("viewport") self.canvas = self.builder.get_object("canvas") self.scene = Scene(self.viewport) signals.update(self.scene.signals) self.builder.connect_signals(signals) self.window.show() def update_canvas(self, widget, event): ctx = self.canvas.window.cairo_create() self.scene.draw(ctx) ctx.clip() if name == "main": app = App() scene = app.scene scene.add(Circle((0., 0.), 10.)) gtk.main() And the Glade file "graphics_glitch.glade": <?xml version="1.0"?> <interface> <requires lib="gtk+" version="2.16"/> <!-- interface-naming-policy project-wide --> <object class="GtkWindow" id="window"> <property name="width_request">200</property> <property name="height_request">200</property> <property name="visible">True</property> <signal name="destroy" handler="gtk_main_quit"/> <child> <object class="GtkScrolledWindow" id="scrolledwindow1"> <property name="visible">True</property> <property name="can_focus">True</property> <property name="hadjustment">h_adjust</property> <property name="vadjustment">v_adjust</property> <property name="hscrollbar_policy">automatic</property> <property name="vscrollbar_policy">automatic</property> <child> <object class="GtkViewport" id="viewport"> <property name="visible">True</property> <property name="resize_mode">queue</property> <child> <object class="GtkDrawingArea" id="canvas"> <property name="width_request">640</property> <property name="height_request">480</property> <property name="visible">True</property> <signal name="expose_event" handler="canvas_exposed"/> </object> </child> </object> </child> </object> </child> </object> <object class="GtkAdjustment" id="h_adjust"> <property name="lower">-1000</property> <property name="upper">1000</property> <property name="step_increment">1</property> <property name="page_increment">25</property> <property name="page_size">25</property> </object> <object class="GtkAdjustment" id="v_adjust"> <property name="lower">-1000</property> <property name="upper">1000</property> <property name="step_increment">1</property> <property name="page_increment">25</property> <property name="page_size">25</property> </object> </interface> Thanks! --Dan

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