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• Is it possible to use a back reference to specify the number of replications in a regular expression

  - by user307894

  Is it possible to use a back reference to specify the number of replications in a regular expression? foo= 'ADCKAL+2AG.+2AG.+2AG.+2AGGG+.+G+3AGGa4.' The substrings that start with '+[0-9]' followed by '[A-z]{n}.' need to be replaced with simply '+' where the variable n is the digit from earlier in the substring. Can that n be back referenced? For example (doesn't work) '+([0-9])[A-z]{/1}.' is the pattern I want replaced with "+" (that last dot can be any character and represents a quality score) so that foo should come out to ADCKAL++++G.G+. foo = 'ADCKAL+2AG.+2AG.+2AG.+2AGGG^+.+G+3AGGa4.' indelpatt = re.compile('\+([0-9])') while indelpatt.search(foo): indelsize=int(indelpatt.search(foo).group(1)) new_regex = '\+%s[ACGTNacgtn]{%s}.' % (indelsize,indelsize) newpatt=re.compile(new_regex) foo = newpatt.sub("+", foo) I'm probably missing an easier way to parse the string.

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• Why is numpy c extension slow?

  - by Bitwise

  I am working on large numpy arrays, and some native numpy operations are too slow for my needs (for example simple operations such as "bitwise" A&B). I started looking into writing C extensions to try and improve performance. As a test case, I tried the example given here, implementing a simple trace calculation. I was able to get it to work, but was surprised by the performance: for a (1000,1000) numpy array, numpy.trace() was about 1000 times faster than the C extension! This happens whether I run it once or many times. Is this expected? Is the C extension overhead that bad? Any ideas how to speed things up?

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• Is there any way to do this without using '__init__'?

  - by zjm1126

  class a(object): c=b()# how to call the b method d=4 def __init__(self): print self.c def b(self): return self.d+1 a() how to call the 'b' method not in the __init__ thanks the error is : Traceback (most recent call last): File "D:\zjm_code\a.py", line 12, in <module> class a(object): File "D:\zjm_code\a.py", line 13, in a c=b()# how to call the b method NameError: name 'b' is not defined

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• Return more then One field from database SQLAlchemy

  - by David Neudorfer

  This line: used_emails = [row.email for row in db.execute(select([halo4.c.email], halo4.c.email!=''))] Returns: ['[email protected]', '[email protected]', '[email protected]', '[email protected]', '[email protected]'] I use this to find a match: if recipient in used_emails: If it finds a match I need to pull another field (halo4.c.code) from the database in the same row. Any suggestions on how to do this?

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• How can I access the "through" object of a Django ManyToManyField?

  - by Macha

  I have the following models in my Django app. How can I from the Team model find all the User objects who have accepted as True in the Membership model? I know I need to use Team.objects.filter(), but I'm not sure how to check the value of the accepted field. from django.contrib.auth.models import User class Team(models.Model): members = models.ManyToManyField(User, through="Membership") class Membership(models.Model): user = models.ForeignKey(User) team = models.ForeignKey(Team) accepted = models.BooleanField(default=False)

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• Django - count date between

  - by DJPy

  I have many record in my database wich contains datetime field (e.g. 2010-05-23 17:45:57). I want to count all records between e.g. 15:00 and 15:59 (it all can by from other day, month or year). How can I do this?

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• SqlAlchemy hangs after adding record in MS SQL

  - by Patrick

  I'm running SQLAlchemy on Jython and trying to connect to a MS SQL database using jTDS with windows authentication. I can query and delete just fine but when I try to insert new values it will hang when I commit. int 'before add' session.add(newVal) print 'after add' session.commit() print 'after commit' I see the first two print statements but not the last. My CPU maxes out and I can't even query the table directly using the MS SQL Management Studio. When I kill the Jython java process I can query again but the new values haven't been added. Strangely enough I can insert values directly using an SQL command: insert_sql = "INSERT INTO my_table (my_value) VALUES ('test_value')" session.execute(insert_sql) session.commit() Any ideas what I'm doing wrong?

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• rb plugin the hot key not working

  - by Bunny Rabbit

  def activate(self,shell): self.shell = shell self.action = gtk.Action ('foo','bar','baz',None) self.activate_id = self.action.connect ('activate', self.call_bk_fn,self.shell) self.action_group = gtk.ActionGroup ('hot_key_action_group') self.action_group.add_action_with_accel (self.action, "<control>E") uim = shell.get_ui_manager () uim.insert_action_group (self.action_group, 0) uim.ensure_update () def call_bk_fn(self,shell): print('hello world') i am using the above code in a plugin for rhythmbox ,and here i am trying to register the key ctr+e so that the call_bk_fn gets called whenever the key combination is pressed , but its not working why is that so ?

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• ValueError: setting an array element with a sequence.

  - by MedicalMath

  This code: import numpy as p def firstfunction(): UnFilteredDuringExSummaryOfMeansArray = [] MeanOutputHeader=['TestID','ConditionName','FilterType','RRMean','HRMean','dZdtMaxVoltageMean','BZMean','ZXMean' ,'LVETMean','Z0Mean','StrokeVolumeMean','CardiacOutputMean','VelocityIndexMean'] dataMatrix = BeatByBeatMatrixOfMatrices[column] roughTrimmedMatrix = p.array(dataMatrix[1:,1:17]) trimmedMatrix = p.array(roughTrimmedMatrix,dtype=p.float64) myMeans = p.mean(trimmedMatrix,axis=0,dtype=p.float64) conditionMeansArray = [TestID,testCondition,'UnfilteredBefore',myMeans[3], myMeans[4], myMeans[6], myMeans[9] , myMeans[10], myMeans[11], myMeans[12], myMeans[13], myMeans[14], myMeans[15]] UnFilteredDuringExSummaryOfMeansArray.append(conditionMeansArray) secondfunction(UnFilteredDuringExSummaryOfMeansArray) return def secondfunction(UnFilteredDuringExSummaryOfMeansArray): RRDuringArray = p.array(UnFilteredDuringExSummaryOfMeansArray,dtype=p.float64)[1:,3] return firstfunction() Throws this error message: File "mypath\mypythonscript.py", line 3484, in secondfunction RRDuringArray = p.array(UnFilteredDuringExSummaryOfMeansArray,dtype=p.float64)[1:,3] ValueError: setting an array element with a sequence. However, this code works: import numpy as p a=range(24) b = p.reshape(a,(6,4)) c=p.array(b,dtype=p.float64)[:,2] I re-arranged the code a bit to put it into a cogent posting, but it should more or less have the same result. Can anyone show me what to do to fix the problem in the broken code above so that it stops throwing an error message?

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• Should I use a class in this: Reading a XML file using lxml.

  - by PulpFiction

  Hi everyone. This question is in continuation to my previous question, in which I asked about passing around an ElementTree. I need to read the XML files only and to solve this, I decided to create a global ElementTree and then parse it wherever required. My question is: Is this an acceptable practice? I heard global variables are bad. If I don't make it global, I was suggested to make a class. But do I really need to create a class? What benefits would I have from that approach. Note that I would be handling only one ElementTree instance per run, the operations are read-only. If I don't use a class, how and where do I declare that ElementTree so that it available globally? (Note that I would be importing this module) Please answer this question in the respect that I am a beginner to development, and at this stage I can't figure out whether to use a class or just go with the functional style programming approach.

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• How to check if a file is a textfile?

  - by daniels

  I have a folder full of files and i want to search some string inside them. The issue is that some files may be zip,exe,ogg,etc. Can i check somehow what kind of file is it so i only open and search through txt, php, etc files. I can't rely on the file extension.

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• Sleeping a thread blocking stdin

  - by Sid

  Hey, I'm running a function which evaluates commands passed in using stdin and another function which runs a bunch of jobs. I need to make the latter function sleep at regular intervals but that seems to be blocking the stdin. Any advice on how to resolve this would be appreciated. The source code for the functions is def runJobs(comps, jobQueue, numRunning, limit, lock): while len(jobQueue) >= 0: print(len(jobQueue)); if len(jobQueue) > 0: comp, tasks = find_computer(comps, 0); #do something time.sleep(5); def manageStdin(): print "Global Stdin Begins Now" for line in fileinput.input(): try: print(eval(line)); except Exception, e: print e; --Thanks

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• add new records using signal in django admin

  - by ganesh

  I've a model called broadcastinfo, It has fields viz.. info,userid...userid is excluded. when i add an new info, my broadcastinfo table should get the records of all userid from user table and the given message. Im trying this via signal.Any idea is highly appreciated. Thanks

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• How to set which browser to use in a QTextBrowser link?

  - by lionel319

  I am using PyQt4's QTextBroswer to display a html link. Whenever users click on the link, a browser will be used to open the internet page. My question is, is there a way to set so that our own prefered browser is used to open the url page instead of the preset one? Thanks in advance.

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• I want to select the distict value from models field and then update them (django)

  - by qulzam

  I have models... class Item(models.Model): name = models.CharField('Item Name', max_length = 30) item_code = models.CharField(max_length = 10) color = models.CharField(max_length = 150, null = True, blank = True) size = models.CharField(max_length = 30, null = True, blank = True) fabric_code = models.CharField(max_length = 30, null = True, blank = True) I have values in Item. in Item model name field has the similar values..(but the other values of record are change). I want to select the name field values distinctly(ie similar values select only ones). in one box(like combo box). What kind of form or views i use??

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• list in loop, Nonetype errors

  - by user2926755

  Here is my Code def printList(stringlist): empty = [] if stringlist is None: print empty else: print stringlist def add (stringlist, string): string = [] if string is None else string if stringlist is not None: stringlist.insert(0, string) else: stringlist.append(1) it somehow appears "AttributeError: 'NoneType' object has no attribute 'append'" I was originally looking for the code to be run like this: >>> myList = None >>> printList(myList) [] >>> for word in ['laundry','homework','cooking','cleaning']: myList = add(myList, word) printList(myList) [laundry] [homework, laundry] [cooking, homework, laundry] [cleaning, cooking, homework, laundry]

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• Why use threading data race will occur, but will not use gevent

  - by onlytiancai

  My test code is as follows, using threading, count is not 5,000,000 , so there has been data race, but using gevent, count is 5,000,000, there was no data race . Is not gevent coroutine execution will atom "count + = 1", rather than split into a one CPU instruction to execute? # -*- coding: utf-8 -*- import threading use_gevent = True use_debug = False cycles_count = 100*10000 if use_gevent: from gevent import monkey monkey.patch_thread() count = 0 class Counter(threading.Thread): def __init__(self, name): self.thread_name = name super(Counter, self).__init__(name=name) def run(self): global count for i in xrange(cycles_count): if use_debug: print '%s:%s' % (self.thread_name, count) count = count + 1 counters = [Counter('thread:%s' % i) for i in range(5)] for counter in counters: counter.start() for counter in counters: counter.join() print 'count=%s' % count

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• Django admin panel doesn't work after modify default user model.

  - by damienix

  I was trying to extend user profile. I founded a few solutions, but the most recommended was to create new user class containing foreign key to original django.contrib.auth.models.User class. I did it with this so i have in models.py: class UserProfile(models.Model): user = models.ForeignKey(User, unique=True) website_url = models.URLField(verify_exists=False) and in my admin.py from django.contrib import admin from someapp.models import * from django.contrib.auth.admin import UserAdmin # Define an inline admin descriptor for UserProfile model class UserProfileInline(admin.TabularInline): model = UserProfile fk_name = 'user' max_num = 1 # Define a new UserAdmin class class MyUserAdmin(UserAdmin): inlines = [UserProfileInline, ] # Re-register UserAdmin admin.site.unregister(User) admin.site.register(User, MyUserAdmin) And now when I'm trying to create/edit user in admin panel i have an error: "Unknown column 'content_userprofile.id' in 'field list'" where content is my appname. I was trying to add line AUTH_PROFILE_MODULE = 'content.UserProfile' to my settings.py but with no effect. How to tell panel admin to know how to correctly display fields in user form?

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• wxWidgets/wxPython: Do two identical events cause two handlings?

  - by cool-RR

  When there are two identical events in the event loop, will wxPython handle both of them, or will it call the handler only once for them both? I mean, in my widget I want to have an event like EVT_NEED_TO_RECALCULATE_X. I want this event to be posted in all kinds of different circumstances that require x to be recalculated. However, even if there are two different reasons to recalculate x, only one recalculation needs to be done. How do I do this?

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• sending the data from form to db in django

  - by BharatKrishna

  I have a form in which I can input text through text boxes. How do I make these data go into the db on clicking submit. this is the code of the form in the template. <form method="post" action="app/save_page"> <p> Title:<input type="text" name="title"/> </p> <p> Name:<input type="text" name="name"/> </p> <p> Phone:<input type="text" name="phone"/> </p> <p> Email:<input type="text" name="email"/> </p> <p> <textarea name="description" rows=20 cols=60> </textarea><br> </p> <input type="submit" value="Submit"/> </form> I have a function in the views.py for saving the data in the page. But I dont know how to impliment it properly: def save_page(request): title = request.POST["title"] name = request.POST["name"] phone = request.POST["phone"] email = request.POST["email"] description = request.POST["description"] Now how do I send these into the db? And what do I put in views.py so that those data goes into the db? so how do I open a database connection and put those into the db and save it? should I do something like : connection=sqlite3.connect('app.db') cursor= connection.cursor() ..... ..... connection.commit() connection.close() Thank you.

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• sip.conf configuration file - add new line to each record

  - by Flukey

  I have a sip configuration file which looks like this: [1664] username=1664 mailbox=1664@8360 host=192.168.254.3 type=friend subscribemwi=no [1679] username=1679 mailbox=1679@8360 host=192.168.254.3 type=friend subscribemwi=no [1700] username=1700 mailbox=1700@8360 host=192.168.254.3 type=friend subscribemwi=no [1701] username=1701 mailbox=1701@8360 host=192.168.254.3 type=friend subscribemwi=no For each record I need to add another line (vmxten for each record) for example the above becomes: [1664] username=1664 mailbox=1664@8360 host=192.168.254.3 type=friend subscribemwi=no vmexten=1664 [1679] username=1679 mailbox=1679@8360 host=192.168.254.3 type=friend subscribemwi=no vmexten=1679 [1700] username=1700 mailbox=1700@8360 host=192.168.254.3 type=friend subscribemwi=no vmexten=1700 [1701] username=1701 mailbox=1701@8360 host=192.168.254.3 type=friend subscribemwi=no vmexten=1701 What would you say would be the quickest way to do this? there are hundreds of records in the file, therefore modifying all of the records by hand would take a long time. Would you use Regex? Would you use sed? I'm interested to know how you would approach the problem. Thanks

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• Converting time period strings to value/unit pair

  - by randomtoor

  I need to parse the contents of a string that represents a time period. The format of the string is value/unit, e.g.: 1s, 60min, 24h. I would separate the actual value (an int) and unit (a str) to separated variables. At the moment I do it like this: def validate_time(time): binsize = time.strip() unit = re.sub('[0-9]','',binsize) if unit not in ['s','m','min','h','l']: print "Error: unit {0} is not valid".format(unit) sys.exit(2) tmp = re.sub('[^0-9]','',binsize) try: value = int(tmp) except ValueError: print "Error: {0} is not valid".format(time) sys.exit(2) return value,unit However, it is not ideal as things like 1m0 are also (wrongly) validated (value=10,unit=m). What is the best way to validate/parse this input?

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• element-wise lookup on one ndarray to another ndarray of different shapes

  - by fahhean

  Hi, I am new to numpy. Am wonder is there a way to do lookup of two ndarray of different shapes? for example, i have 2 ndarrays as below: X = array([[0, 3, 6], [3, 3, 3], [6, 0, 3]]) Y = array([[0, 100], [3, 500], [6, 800]]) and would like to lookup each element of X in Y, then be able to return the second column of Y: Z = array([[100, 500, 800], [500, 500, 500], [800, 100, 500]]) thanks, fahhean

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• How can we change a wx.MenuBar background and foreground colour using wxpython?

  - by aF

  Hello, I want to change the wxpython menubar colours. How can I do it? Thanks in advance :)

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• sql select from a large number of IDs

  - by Claudiu

  I have a table, Foo. I run a query on Foo to get the ids from a subset of Foo. I then want to run a more complicated set of queries, but only on those IDs. Is there an efficient way to do this? The best I can think of is creating a query such as: SELECT ... --complicated stuff WHERE ... --more stuff AND id IN (1, 2, 3, 9, 413, 4324, ..., 939393) That is, I construct a huge "IN" clause. Is this efficient? Is there a more efficient way of doing this, or is the only way to JOIN with the inital query that gets the IDs? If it helps, I'm using SQLObject to connect to a PostgreSQL database, and I have access to the cursor that executed the query to get all the IDs.

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