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• How to stringfy a swig matrix object in python

  - by leo

  Hi, I am using swig wrapper of openbabel(written in C++, and supply a python wrapper through swig) Below i just use it to read a molecule structure file and get the unitcell property of it. import pybel for molecule in pybel.readfile('pdb','./test.pdb'): unitcell = molecule.unitcell print unitcell |.. |.. The unitcell has function CellMatrix(), unitcell.GetCellMatrix() <22 the OpenBabel::matrix3x3 is something like : 1 2 3 4 5 6 7 8 9 i am wondering how to print out the contents of the matrix3*3 . I have tried str and repr with it. Any general way to stringfy the contents of a matrix wrapped by swing in python ? thanks

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• pubsubhubbub link with Project Rome

  - by itsadok

  I want to use Project Rome to create an RSS feed, using the code from the tutorial as base. I would like to add a pubsubhubbub discovery link, but there doesn't seem to be a general way to do so. I can use a Link object if I create an atom feed (which I don't want to limit myself to), or I can just add foreign markup, like this: // import org.jdom.Element Element element = new Element("link"); element.setAttribute("rel", "hub"); element.setAttribute("href", "https://myhub.example.com/endpoint"); feed.setForeignMarkup(Arrays.asList(element)); But it feels ugly. Is this really the best way to do this?

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• How to make a reference to a normal java class from GWT server side

  - by mohammed-qumhieh

  hello I building my project using GWT plugin for eclipse Galileo, after i done from RPC between the server and client, i trying to make a reference from gwt server side to normal java class in non-gwt-project, but every time i make an object from the class (which in non-gwt-project) gives me ClassNotFoundException. i did the buildpath for the gwt project, but still gives me the same exception, is there a way to make that from server side (not from client side). i need help please, i spent a lot of time searching for solution but i did not found anything. i appreciate any suggestions...thanks

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• Why is thread local storage so slow?

  - by dsimcha

  I'm working on a custom mark-release style memory allocator for the D programming language that works by allocating from thread-local regions. It seems that the thread local storage bottleneck is causing a huge (~50%) slowdown in allocating memory from these regions compared to an otherwise identical single threaded version of the code, even after designing my code to have only one TLS lookup per allocation/deallocation. This is based on allocating/freeing memory a large number of times in a loop, and I'm trying to figure out if it's an artifact of my benchmarking method. My understanding is that thread local storage should basically just involve accessing something through an extra layer of indirection, similar to accessing a variable via a pointer. Is this incorrect? How much overhead does thread-local storage typically have? Note: Although I mention D, I'm also interested in general answers that aren't specific to D, since D's implementation of thread-local storage will likely improve if it is slower than the best implementations.

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• Using Solr and Zends Lucene port together...

  - by thebluefox

  Afternoon chaps, After my adventures with Zend-Lucene-Search, and discovering it isn't all its cracked up to be when indexing large datasets, I've turned to Solr (thanks to Bill Karwin for that :) ) I've got Solr indexing the db far far quicker now, taking just over 8 minutes to index a table of just over 1.7million rows - which I'm very pleased with. However, when I come to try and search the index with the Zend port, I run into the following error; Fatal error: Uncaught exception 'Zend_Search_Lucene_Exception' with message 'Unsupported segments file format' in /var/www/Zend/Search/Lucene.php:407 Stack trace: #0 /var/www/Zend/Search/Lucene.php(555): Zend_Search_Lucene-_readSegmentsFile() #1 /var/www/z_search.php(12): Zend_Search_Lucene-__construct('tmp/feeds_index') #2 {main} thrown in /var/www/Zend/Search/Lucene.php on line 407 I've tried to have a search around but can't seem to find anything about this problem, everyone just seems to be able to get them to work? Any help as always much appreciated :) Thanks, Tom

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• Datacontracts property getter running twice

  - by user321426

  I have a set of data contracts that act as wrappers to base classes that we wish to expose. A quick example is: [DataMember] public List<decimal> Points { get { return sourceObject.ListPoints(); } private set{} } We have some other properties that we have to massage the data first (we are converting object graphs and need to guard against circular references). The issue that we are seeing is that this getter will fire twice, once within the service operation, then again during serialization. This is causing two problems: We manually add to collections, since this is running twice the collections are filled with dupes. If an exception is thrown during the second run, it happens outside of the try/catch in the operation, and does not throw a fault. The service throws a cryptic timeout message, and the only way to see the error is via WCF trace logs.

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• System.EntryPointNotFoundException:while importing libsrp in a c# code under ubuntu

  - by Hema Joshi

  hi, i am importing libsrp.so in a c# code under ubuntu.my code is using System; using System.IO; using System.Text; using System.Runtime.InteropServices; namespace Main { public static class Test { [DllImport("libsrp.so" ,EntryPoint = "SRP_initialize_library", CallingConvention=CallingConvention.Cdecl)] public static extern int SRP_initialize_library(); [DllImport("libsrp.so" ,EntryPoint = "SRP_finalize_library", CallingConvention=CallingConvention.Cdecl)] public static extern int SRP_finalize_library(); } public class Test1 { public static void Main( string[] args ) { Console.Write("output is:", Test.SRP_initialize_library()); Test. SRP_finalize_library(); Console.Write("\n"); } } } but while runnign the code using mono i am finding error Unhandled Exception: System.EntryPointNotFoundException: SRP_initialize_library at (wrapper managed-to-native) Main.Test:SRP_initialize_library () at Main.Test1.Main (System.String[] args) [0x00000] i am unable to find what is the problem? please tell me where is the problem?

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• Are there tools that would be suitable for maintaining a changelog for a Cabal Haskell package?

  - by Norman Ramsey

  I'm working fast and furiously on a new Haskell package for compiler writers. I'm going through many minor version numbers daily, and the Haskell packaging system, Cabal, doesn't seem to offer any tools for updating version numbers or for maintaining a change log. (Logs are going into git but that's not visible to anyone using the package.) I would kill for something equivalent to Debian's uupdate or dch/debchange tools. Does anyone know of general-purpose tools that could be used to increment version numbers automatically and add an entry to a change log?

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• WebClient DownloadStringCompleted Never Fired in Console Application

  - by azamsharp

  I am not sure why the callback methods are not fired AT ALL. I am using VS 2010. static void Main(string[] args) { try { var url = "some link to RSS FEED"; var client = new WebClient(); client.DownloadStringCompleted += new DownloadStringCompletedEventHandler(client_DownloadStringCompleted); client.DownloadDataCompleted += new DownloadDataCompletedEventHandler(client_DownloadDataCompleted); client.DownloadStringAsync(new Uri(url)); } catch (Exception ex) { Console.WriteLine(ex.Message); } } // THIS IS NEVER FIRED static void client_DownloadDataCompleted(object sender, DownloadDataCompletedEventArgs e) { Console.WriteLine("something"); } // THIS IS NEVER FIRED static void client_DownloadStringCompleted(object sender, DownloadStringCompletedEventArgs e) { Console.WriteLine("do something"); var rss = XElement.Parse(e.Result); var pictures = from item in rss.Descendants("channel") select new Picture { Name = item.Element("title").Value }; foreach (var picture in pictures) { Console.WriteLine(picture.Name); Console.WriteLine(picture.Url); } }

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• So how I can control the page contents loading sequence in dojo

  - by David Zhao

  Hi there, I'm using dojo for our UI's, and would like to load certain part of page contents in sequence. For example, for a certain stock, I'd like to load stock general information, such as ticker, company name, key stats, etc. and a grid with the last 30 days open/close prices. Different contents will be fetched from the server separately. Now, I'd like first load the grid so the user can have something to look at, then, say, start loading of key stats which is a large data set takes longer time to load. How do I do this. I tried: dojo.addOnLoad(function() { startGrid(); //mock grid startup function which works fine getKeyStats(); //mock key stat getter function also works fine }); But dojo is loading getKeyStats(), then startGrid() here for some reason, and sequence doesn't seem be matter here. So how I can control the loading sequence at will? Thanks in advance! David

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• Recommendations OutSourcing .NET Work To Indian Team [closed]

  - by MT

  hi there, I've been asked to research outsourcing some of our C# winform development work. The aim is to employ a dedicated Indian team of around 5 developers reporting to myself. A google search provides a plethora of different companies, none of which I have ever heard of before. I'm a little skeptical about this plan at the moment but remain open minded. I was hoping some of you guys had some general advice about how to approach this. Or even better recommendations for companies to contact based upon your experiences? Many thanks

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• Unicode characters in URLs

  - by Pekka

  In 2010, would you serve URLs containing UTF-8 characters in a large web portal? Unicode characters are forbidden as per the RFC on URLs (see here). They would have to be percent encoded to be standards compliant. My main point, though, is serving the unencoded characters for the sole purpose of having nice-looking URLs, so percent encoding is out. All major browsers seem to be parsing those URLs okay no matter what the RFC says. My general impression, though, is that it gets very shaky when leaving the domain of web browsers: URLs getting copy+pasted into text files, E-Mails, even Web sites with a different encoding HTTP Client libraries Exotic browsers, RSS readers Is my impression correct that trouble is to be expected here, and thus it's not a practical solution (yet) if you're serving a non-technical audience and it's important that all your links work properly even if quoted and passed on? Is there some magic way of serving nice-looking URLs in HTML http://www.example.com/düsseldorf?neighbourhood=Lörick that can be copy+pasted with the special characters intact, but work correctly when re-used in older clients?

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• How to backup database (MS SQl Server 2008) in C# without using SMO (having proplems) ?

  - by SzamDev

  Hi I have this code and it is not working but I don't why? try { saveFileDialog1.Filter = "SQL Server database backup files|*.bak"; saveFileDialog1.Title = "Database Backup"; if (saveFileDialog1.ShowDialog() == DialogResult.OK) { SqlCommand bu2 = new SqlCommand(); SqlConnection s = new SqlConnection("Data Source=M1-PC;Initial Catalog=master;Integrated Security=True;Pooling=False"); bu2.CommandText = String.Format("BACKUP DATABASE LA TO DISK='{0}'", saveFileDialog1.FileName); s.Open(); bu2.ExecuteNonQuery(); s.Close(); MessageBox.Show("ok"); } } catch (Exception ex) { MessageBox.Show(ex.ToString()); } and I get this error : What is the proplem?

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• How do I use test/beta Perl modules from test Perl scripts?

  - by DVK

  If my Perl code has a production code location and "beta" code location (e.g. production Perl code us in /usr/code/scripts, BETA Perl code is in /usr/code/beta/scripts; production Perl libraries are in /usr/code/lib/perl and BETA versions of those libraries are in /usr/code/beta/lib/perl, is there an easy way for me to achieve such a setup? The exact requirements are: The code must be THE SAME in production and BETA location. To clarify, to promote any code (library or script) from BETA to production, the ONLY thing which needs to happen is literally issuing cp command from BETA to prod location - both the file name AND file contents must remain identical. BETA versions of scripts must call other BETA scripts and BETA libraries (if exist) or production libraries (if BETA libraries do not exist) The code paths must be the same between BETA and production with the exception of base directory (/usr/code/ vs /usr/code/beta/) I will present how we solved the problem as an answer to this question, but I'd like to know if there's a better way.

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• Make a c# / wpf event fire only once?

  - by Donnie

  I have a case where I want a given event to execute once, and only once. I'm trying to do it this way, but I'm having prolems (else I wouldn't be asking). Note that the following code is inside the function that decides that the event needs to be fired. EventHandler h = delegate(Object sender, EventArgs e) { FiringControl.TheEvent -= h; // <-- Error, use of unassigned local variable "h" // Do stuff } FiringControl.TheEvent += h; In general this should work because of the way scope is preserved for delegates until after they're done running, but, since h is in the process of being built when I try to use it it is still considered to be "uninitialized", apparently.

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• UltiDev Cassini and <system.webServer> web.config settings

  - by Robert Koritnik

  MS Cassini Development Web Server is a nice product that executes web requests in a similar way that IIS7 does. Every request (event for static content) goes through the same .Net pipeline without exception. All custom HttpModule can handle any request. But sometimes you don't want these modules to execute for certain content (most often static content). In this regard, MS Cassini doesn't read/obey <system.webServer> web.config settings like IIS7 does. I'm particularly interested in these settings. <system.webServer> ... <handlers /> <modules /> </syste.webServer> Does UltiDev's Cassini (a separate payable product upgraded from MS Cassini) web server read these settings and execute as the web.config tells it to?

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• How to kill msvsmon.exe when finished remote debugging?

  - by dferraro

  Hi, We are a .NET LOB shop using MS CRM as our CRM platform. To this end, we many times a day during development phases are using remote debugging due to 2 connection limit to the server. We are able to setup remote debugging without logging onto the machine by using PsExec. This works great - but how the heck do we kill the remote debugger for that user, once we are finished debugging? In fact, not even sure how to kill the remote debugger in general, even when manually opening it... without remoting into server and using task manager, or keeping the server open and doing File-Exit on the debugger. Any advice?

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• Jruby embedded modules and classes.

  - by James Moore

  Hey, I have a ruby file as follows: module Example class Myclass def t_st "Hello World!" end end end now if this was just a class I would be able to use the following java code: ScriptEngine jruby = new ScriptEngineManager().getEngineByName("jruby"); jruby.eval(new BufferedReader(new FileReader("example.rb"))); Object example = jruby.eval("myclass.new"); However, this class rests inside a module. Calling the same code as above produces the error: Exception in thread "main" org.jruby.embed.EvalFailedException: uninitialized constant myclass In addition, calling: Object example = jruby.eval("Example"); The module returns no error. So one would assume this follows the format for Ruby. Object example = jruby.eval("Example::myclass.new"); Again however, I get the same error as before. Can anyone help? As there is little documentation on JRuby? Thanks

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• setProperty must be overridden by all subclasses of SOAPMessage

  - by Pablo

  I'm trying to deploy some web services in a WAR application on JBoss 5.1.0. I have created the source files from an existing wsdl using JAX-WS tool wsgen. This created the Service files and @XmlType annotated clases that would act as request and response wrappers. This classes worked well on JBoss 4.2.3, but when moving to JBoss 5.1.0, I get this exception. java.lang.UnsupportedOperationException: setProperty must be overridden by all subclasses of SOAPMessage My configuration: Windows XP SP3 (but getting the same on Vista, as well as on Linux) Sun JDK 1.6.0_17 JBoss 5.1.0 GA for jdk6 Thanks in advance!

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• Scala regex Named Capturing Groups

  - by Brent

  In scala.util.matching.Regex trait MatchData I see that there support for groupnames (Named Capturing Groups) But since Java does not support groupnames until version 7 as I understand it, Scala version 2.8.0.RC4 (Java HotSpot(TM) 64-Bit Server VM, Java 1.6. gives me this exception: scala> val pattern = """(?<login>\w+) (?<id>\d+)""".r java.util.regex.PatternSyntaxException: Look-behind group does not have an obvio us maximum length near index 11 (?<login>\w+) (?<id>\d+) ^ at java.util.regex.Pattern.error(Pattern.java:1713) at java.util.regex.Pattern.group0(Pattern.java:2488) at java.util.regex.Pattern.sequence(Pattern.java:1806) at java.util.regex.Pattern.expr(Pattern.java:1752) at java.util.regex.Pattern.compile(Pattern.java:1460) So the question is Named Capturing Groups supported in Scala? If so any examples out there? If not I might look into the Named-Regexp lib from clement.denis.

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• How to configure Multi-tenant plugin as single-tenant with Spring security plugin as resolver?

  - by Fabien Barbier

  I can create a secure, multi-tenant web app with Grails by : setup spring security plugin, setup Multi-tenant plugin (via multi-tenant install and multi-tenant-spring-security) update config.groovy : tenant { mode = "multiTenant" resolver.type = "springSecurity" } add : Integer userTenntId in User domain add a domain class for tenant Organization associate the tenants with Organization Edit BootStrap.groovy. Everything works fine in multi-tenant mode, but how to use mode = "singleTenant" ? This configuration sound not working : tenant { mode = "singleTenant" resolver.type = "springSecurity" } Edit : I try this config : tenant { mode = "singleTenant" resolver.type = "springSecurity" datasourceResolver.type = "config" dataSourceTenantMap { t1 = "jdbc:hsqldb:file:custFoo" t2 = "jdbc:hsqldb:file:custBar" } } But I get : ERROR errors.GrailsExceptionResolver - Executing action [list] of controller [org.example.TicketController] caused exception: java.lang.StackOverflowError and : Caused by: java.lang.StackOverflowError at org.grails.multitenant.springsecurity.SpringSecurityCurrentTenant.getTenantIdFromSpringSecurity(SpringSecurityCurrentTenant.groovy:50) at org.grails.multitenant.springsecurity.SpringSecurityCurrentTenant.this$2$getTenantIdFromSpringSecurity(SpringSecurityCurrentTenant.groovy) at org.grails.multitenant.springsecurity.SpringSecurityCurrentTenant$this$2$getTenantIdFromSpringSecurity.callCurrent(Unknown Source) at org.grails.multitenant.springsecurity.SpringSecurityCurrentTenant.get(SpringSecurityCurrentTenant.groovy:41) at com.infusion.tenant.spring.TenantBeanContainer.getBean(TenantBeanContainer.java:53) at com.infusion.tenant.spring.TenantMethodInterceptor.invoke(TenantMethodInterceptor.java:32) at $Proxy14.getConnection(Unknown Source)

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• Using MS Moles with datacontext and stored procedures without using a Connection string.

  - by Brian

  I have just begun to work with MS Moles for testing and I have followed the idea/pattern in which jcollum(thanks) uses a Mole for a table in this stackoverflow question here. But I am having a problem as I do not want to have to pass a connection string when I use the datasource as such: using (TheDataContext dataContext = new TheDataContext(myConnectionString)) { dataContext.ExecuteStoredprocedure(value, ref ValueExists); } I really like the fact that I just need to mole the table and everything else is done for me. I realize I could just mole the ExecuteStoredProcedure method, but I am wondering if I could just somehow avoid the sql exception I am getting here when I do not pass in the connection string. Or, if I there is a better way to do this? Therefore, does anyone have a solution so that I can avoid placing in the connection string? Thanks in advance.

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• Unable to load DLL 'foo.dll', but only when running through vhost

  - by biozinc

  This is a variation on the old System.DllNotFoundException: Unable to load DLL 'foo.dll': The specified module could not be found. (Exception from HRESULT: 0x8007007E). problem (where, of course, foo.dll is the name of an actual DLL). The strange part is that I only get this error when I "Run" in VS (2008 if that's relevant). That sits in the MyApp.vhost.exe processes. If I run the actual app in a command line (MyApp.exe) I encounter no errors. The problem extends to unit tests with MSTest. A check on the DLL with DependencyWalker on Foo.dll doesn't show any issues. Any ideas?

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• JDBC Realm: GlassFish v2.1 = OK; GlassFish v3 = fail with invaliduserreason

  - by Vik Gamov

  In my J2EE 5 application I have a JDBC Realm based security with Form method. Encrypt method is MD5 as default. The database is PostgreSQL 8.4 installed locally (or 8.3 available via lan). My app used to work finely on GlassFish v2.1 server with PostgreSQL 8.3, but now I need to deploy it on GlassFish v3. I am absolutely sure I have done all the same config on GFv3 like creating Connection Pool (which pings with no problem), JDBC Resource and JDBC Realm. But on GFv3 I get login exception with "invaliduserreason" while the database schema is just created from the working database script. I have checked the data and entered login/password thousand times and it seems that data is all right. So where can I find the reason of unworking security? Please, advice. NetBeans 6.8 Thanks.

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• Linq2SQL using Update StoredProcedure

  - by PeterTheNiceGuy

  We use queries generated by Linq for data retrieval but for INSERT and UPDATE we do not allow generated SQL, but restrict to the use of stored procedures. I connected the Update and the Insert behaviour in the DBML to the stored procedures. The procedures are called, the data gets inserted/updated = all if fine, except in the case of optimistic concurrency. If a record was changed between retrieval and update, the update should fail. When Linq generates the Update statement itself, it throws a ChangeConflictException as expected, but using the stored procedure no Exception is thrown. Thanks a lot for any help on this!

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