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• Android: Filtering a SimpleCursorAdapter ListView

  - by Diego Tori

  Right now, I'm running into issues trying to implement a FilterQueryProvider in my custom SimpleCursorAdapter, since I'm unsure of what to do in the FilterQueryProvider's runQuery function. In other words, since the query that comprises my ListView basically gets the rowID, name, and a third column from my databases's table, I want to be able to filter the cursor based on the partial value of the name column. However, I am uncertain of whether I can do this directly from runQuery without expanding my DB class since I want to filter the existing cursor, or will I have to create a new query function in my DB class that partially searches my name column, and if so, how would I go about creating the query statement while using the CharSequence constraint argument in runQuery? I am also concerned about the performance issues associated with trying to run multiple queries based on partial text since the DB table in question has about 1300-1400 rows. In other words, would I run into a bottleneck trying to filter the cursor?

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• problem installing VS 2010 after uninstalling the RC

  - by rap-uvic

  Hi I uninstalled my VS 2010 RC to install VS 2010. However, it fails to install with the following error in the log files: d:\vs_setup.msi could not be opened. I've tried running the windows clean install and deleting any VS2010 files; also renamed the Microsoft Visual Studio 10.0 folder in the registry, but I keep getting the same error. I can see the vs_setup.msi on the dvd, it just won't allow me to run it directly. I have to run setup.exe. Any ideas?

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• PerformanceCounters on .NET 4.0 & Windows 7

  - by scott

  I have a program that works fine on VS2008 and Vista, but I'm trying it on Windows 7 and VS2010 / .NET Framework 4.0 and it's not working. Ultimately the problem is that System.Diagnostics.PerformanceCounterCategory.GetCategories() (and other PerformanceCounterCategory methods) is not working. I'm getting a System.InvalidOperationException with the message "Cannot load Counter Name data because an invalid index '' was read from the registry." I can reproduce this with the very simple program shown below: class Program { static void Main(string[] args) { foreach (var pc in System.Diagnostics.PerformanceCounterCategory.GetCategories()) { Console.WriteLine(pc.CategoryName); } } } I did make sure I'm running the program as an admin. It doesn't matter if I run it with VS/Debugger attached or not. I don't have another machine with Windows 7 or VS2010 to test it on, so I'm not sure which is complicating things here (or both?). It is Windows 7 x64 and I've tried forcing the app to run in both x32 and x64 but get the same results.

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• Python - calculate multinomial probability density functions on large dataset?

  - by Seafoid

  Hi, I originally intended to use MATLAB to tackle this problem but the inbuilt functions has limitations that do not suit my goal. The same limitation occurs in NumPy. I have two tab-delimited files. The first is a file showing amino acid residue, frequency and count for an in-house database of protein structures, i.e. A 0.25 1 S 0.25 1 T 0.25 1 P 0.25 1 The second file consists of quadruplets of amino acids and the number of times they occur, i.e. ASTP 1 Note, there are 8,000 such quadruplets. Based on the background frequency of occurence of each amino acid and the count of quadruplets, I aim to calculate the multinomial probability density function for each quadruplet and subsequently use it as the expected value in a maximum likelihood calculation. The multinomial distribution is as follows: f(x|n, p) = n!/(x1!*x2!*...*xk!)*((p1^x1)*(p2^x2)*...*(pk^xk)) where x is the number of each of k outcomes in n trials with fixed probabilities p. n is 4 four in all cases in my calculation. I have created three functions to calculate this distribution. # functions for multinomial distribution def expected_quadruplets(x, y): expected = x*y return expected # calculates the probabilities of occurence raised to the number of occurrences def prod_prob(p1, a, p2, b, p3, c, p4, d): prob_prod = (pow(p1, a))*(pow(p2, b))*(pow(p3, c))*(pow(p4, d)) return prob_prod # factorial() and multinomial_coefficient() work in tandem to calculate C, the multinomial coefficient def factorial(n): if n <= 1: return 1 return n*factorial(n-1) def multinomial_coefficient(a, b, c, d): n = 24.0 multi_coeff = (n/(factorial(a) * factorial(b) * factorial(c) * factorial(d))) return multi_coeff The problem is how best to structure the data in order to tackle the calculation most efficiently, in a manner that I can read (you guys write some cryptic code :-)) and that will not create an overflow or runtime error. To data my data is represented as nested lists. amino_acids = [['A', '0.25', '1'], ['S', '0.25', '1'], ['T', '0.25', '1'], ['P', '0.25', '1']] quadruplets = [['ASTP', '1']] I initially intended calling these functions within a nested for loop but this resulted in runtime errors or overfloe errors. I know that I can reset the recursion limit but I would rather do this more elegantly. I had the following: for i in quadruplets: quad = i[0].split(' ') for j in amino_acids: for k in quadruplets: for v in k: if j[0] == v: multinomial_coefficient(int(j[2]), int(j[2]), int(j[2]), int(j[2])) I haven'te really gotten to how to incorporate the other functions yet. I think that my current nested list arrangement is sub optimal. I wish to compare the each letter within the string 'ASTP' with the first component of each sub list in amino_acids. Where a match exists, I wish to pass the appropriate numeric values to the functions using indices. Is their a better way? Can I append the appropriate numbers for each amino acid and quadruplet to a temporary data structure within a loop, pass this to the functions and clear it for the next iteration? Thanks, S :-)

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• FileStream to save file then immediately unlock in C# ?

  - by aron

  Hello, I have this code that saves a pdf file. FileStream fs = new FileStream(SaveLocation, FileMode.Create); fs.Write(result.DocumentBytes, 0, result.DocumentBytes.Length); fs.Flush(); fs.Close(); It works fine. However sometimes it does not release the lock right away and that causes file locking exceptions with functions run after this one run. Is there a ideal way to release the file lock right after the fs.Close() thanks!

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• MongoDb vs Ehcache caching advise for speeding up read only mysql Database

  - by paddydub

  I'm building a Route Planner Webapp using Spring/Hibernate/Tomcat and a mysql database, I have a database containing read only data, such as Bus Stop Coordinates, Bus times which is never updated. I'm trying to make the app run faster, each time the application is run it will preform approx 1000 reads to the database to calculate a route. I have setup a Ehcache which greatly improves the read from database times. I'm now setting terracotta + Ehcache distributed caching to share the cache with multiple Tomcat JVMs. This seems a bit complicated. I've tried memcached but it was not performing as fast as ehcache. I'm wondering if a MongoDb would be better suited. I have no experience with nosql but I would appreciate if anyone has any ideas. All i need is quick access to the read only database.

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• How to optimize my PageRank calculation?

  - by asmaier

  In the book Programming Collective Intelligence I found the following function to compute the PageRank: def calculatepagerank(self,iterations=20): # clear out the current PageRank tables self.con.execute("drop table if exists pagerank") self.con.execute("create table pagerank(urlid primary key,score)") self.con.execute("create index prankidx on pagerank(urlid)") # initialize every url with a PageRank of 1.0 self.con.execute("insert into pagerank select rowid,1.0 from urllist") self.dbcommit() for i in range(iterations): print "Iteration %d" % i for (urlid,) in self.con.execute("select rowid from urllist"): pr=0.15 # Loop through all the pages that link to this one for (linker,) in self.con.execute("select distinct fromid from link where toid=%d" % urlid): # Get the PageRank of the linker linkingpr=self.con.execute("select score from pagerank where urlid=%d" % linker).fetchone()[0] # Get the total number of links from the linker linkingcount=self.con.execute("select count(*) from link where fromid=%d" % linker).fetchone()[0] pr+=0.85*(linkingpr/linkingcount) self.con.execute("update pagerank set score=%f where urlid=%d" % (pr,urlid)) self.dbcommit() However, this function is very slow, because of all the SQL queries in every iteration >>> import cProfile >>> cProfile.run("crawler.calculatepagerank()") 2262510 function calls in 136.006 CPU seconds Ordered by: standard name ncalls tottime percall cumtime percall filename:lineno(function) 1 0.000 0.000 136.006 136.006 <string>:1(<module>) 1 20.826 20.826 136.006 136.006 searchengine.py:179(calculatepagerank) 21 0.000 0.000 0.528 0.025 searchengine.py:27(dbcommit) 21 0.528 0.025 0.528 0.025 {method 'commit' of 'sqlite3.Connecti 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler 1339864 112.602 0.000 112.602 0.000 {method 'execute' of 'sqlite3.Connec 922600 2.050 0.000 2.050 0.000 {method 'fetchone' of 'sqlite3.Cursor' 1 0.000 0.000 0.000 0.000 {range} So I optimized the function and came up with this: def calculatepagerank2(self,iterations=20): # clear out the current PageRank tables self.con.execute("drop table if exists pagerank") self.con.execute("create table pagerank(urlid primary key,score)") self.con.execute("create index prankidx on pagerank(urlid)") # initialize every url with a PageRank of 1.0 self.con.execute("insert into pagerank select rowid,1.0 from urllist") self.dbcommit() inlinks={} numoutlinks={} pagerank={} for (urlid,) in self.con.execute("select rowid from urllist"): inlinks[urlid]=[] numoutlinks[urlid]=0 # Initialize pagerank vector with 1.0 pagerank[urlid]=1.0 # Loop through all the pages that link to this one for (inlink,) in self.con.execute("select distinct fromid from link where toid=%d" % urlid): inlinks[urlid].append(inlink) # get number of outgoing links from a page numoutlinks[urlid]=self.con.execute("select count(*) from link where fromid=%d" % urlid).fetchone()[0] for i in range(iterations): print "Iteration %d" % i for urlid in pagerank: pr=0.15 for link in inlinks[urlid]: linkpr=pagerank[link] linkcount=numoutlinks[link] pr+=0.85*(linkpr/linkcount) pagerank[urlid]=pr for urlid in pagerank: self.con.execute("update pagerank set score=%f where urlid=%d" % (pagerank[urlid],urlid)) self.dbcommit() This function is 20 times faster (but uses a lot more memory for all the temporary dictionaries) because it avoids the unnecessary SQL queries in every iteration: >>> cProfile.run("crawler.calculatepagerank2()") 64802 function calls in 6.950 CPU seconds Ordered by: standard name ncalls tottime percall cumtime percall filename:lineno(function) 1 0.004 0.004 6.950 6.950 <string>:1(<module>) 1 1.004 1.004 6.946 6.946 searchengine.py:207(calculatepagerank2 2 0.000 0.000 0.104 0.052 searchengine.py:27(dbcommit) 23065 0.012 0.000 0.012 0.000 {meth 'append' of 'list' objects} 2 0.104 0.052 0.104 0.052 {meth 'commit' of 'sqlite3.Connection 1 0.000 0.000 0.000 0.000 {meth 'disable' of '_lsprof.Profiler' 31298 5.809 0.000 5.809 0.000 {meth 'execute' of 'sqlite3.Connectio 10431 0.018 0.000 0.018 0.000 {method 'fetchone' of 'sqlite3.Cursor' 1 0.000 0.000 0.000 0.000 {range} But is it possible to further reduce the number of SQL queries to speed up the function even more?

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• How to diagnose frequent segfaults

  - by Andreas Gohr

  My server is logging frequent segmentation faults to /var/log/kern.log in different tools. So far I've seen them in Perl, PHP and rsync. All installed software is up-to-date Debian packages. Here's an exerpt from the log file: Mar 2 01:07:54 gaz kernel: [ 5316.246303] imapsync[4533]: segfault at 8b ip 00007fb448c98fe6 sp 00007ffff571dd68 error 4 in libperl.so.5.10.1[7fb448bd7000+164000] Mar 2 01:17:42 gaz kernel: [ 5904.354307] php5-cgi[4441]: segfault at 2bb3dc8 ip 0000000002bb3dc8 sp 00007fffbeeaae48 error 15 Mar 2 02:54:05 gaz kernel: [11687.922316] php5-cgi[4495]: segfault at 2d7acf9 ip 0000000002d7acf9 sp 00007fff60c6eb18 error 15 Mar 2 10:50:08 gaz kernel: [40250.390322] BUG: unable to handle kernel paging request at 00000000024b03f0 Mar 2 10:50:08 gaz kernel: [40250.390341] IP: [<00000000024b03f0>] 0x24b03f0 Mar 2 10:50:08 gaz kernel: [40250.390353] PGD 208c71067 PUD 21c811067 PMD 209329067 PTE 8000000211c88067 Mar 2 10:50:08 gaz kernel: [40250.390365] Oops: 0011 [#1] SMP Mar 2 10:50:08 gaz kernel: [40250.390373] last sysfs file: /sys/devices/pci0000:00/0000:00:12.0/host4/target4:0:0/4:0:0:0/block/sdb/stat Mar 2 10:50:08 gaz kernel: [40250.390386] CPU 1 Mar 2 10:50:08 gaz kernel: [40250.390392] Modules linked in: cpufreq_userspace cpufreq_stats cpufreq_powersave cpufreq_conservative xt_recent xt_tcpudp iptable_nat nf_nat nf_conntrack_ipv4 nf_defrag_ ipv4 ip6table_filter ip6_tables xt_DSCP xt_TCPMSS ipt_LOG ipt_REJECT iptable_mangle iptable_filter xt_multiport xt_state xt_limit xt_conntrack nf_conntrack_ftp nf_conntrack ip_tables x_tables loop snd _hda_codec_atihdmi snd_hda_intel snd_hda_codec snd_hwdep snd_pcm radeon snd_timer ttm snd drm_kms_helper soundcore drm snd_page_alloc i2c_algo_bit shpchp i2c_piix4 edac_core pcspkr k8temp evdev edac_m ce_amd pci_hotplug i2c_core button ext3 jbd mbcache dm_mod powernow_k8 aacraid 3w_9xxx 3w_xxxx raid10 raid456 async_raid6_recov async_pq raid6_pq async_xor xor async_memcpy async_tx raid1 raid0 md_mod sata_nv sata_sil sata_via sd_mod crc_t10dif ata_generic ahci pata_atiixp ohci_hcd libata r8169 mii thermal ehci_hcd processor thermal_sys scsi_mod usbcore nls_base [last unloaded: scsi_wait_scan] Mar 2 10:50:08 gaz kernel: [40250.390566] Pid: 11482, comm: munin-limits Not tainted 2.6.32-5-amd64 #1 MS-7368 Mar 2 10:50:08 gaz kernel: [40250.390576] RIP: 0010:[<00000000024b03f0>] [<00000000024b03f0>] 0x24b03f0 Mar 2 10:50:08 gaz kernel: [40250.390586] RSP: 0018:ffff88021cc8dec0 EFLAGS: 00010286 Mar 2 10:50:08 gaz kernel: [40250.390593] RAX: 000000001ddc1000 RBX: 0000000000000010 RCX: ffffffff810f9904 Mar 2 10:50:08 gaz kernel: [40250.390600] RDX: 0000000000000000 RSI: ffffea0007688200 RDI: 0000000000000286 Mar 2 10:50:08 gaz kernel: [40250.390608] RBP: 00000000ffffffea R08: 0000000000000025 R09: 7865542f30312e35 Mar 2 10:50:08 gaz kernel: [40250.390615] R10: 000000d01cc8ddf8 R11: 0000000000000246 R12: ffff88021cc8def8 Mar 2 10:50:08 gaz kernel: [40250.390622] R13: 0000000002295010 R14: 00000000022c9db0 R15: 0000000002488d78 Mar 2 10:50:08 gaz kernel: [40250.390630] FS: 00007f3b3c8b2700(0000) GS:ffff880008d00000(0000) knlGS:0000000000000000 Mar 2 10:50:08 gaz kernel: [40250.390641] CS: 0010 DS: 0000 ES: 0000 CR0: 0000000080050033 Mar 2 10:50:08 gaz kernel: [40250.390648] CR2: 00000000024b03f0 CR3: 000000021c5d1000 CR4: 00000000000006e0 Mar 2 10:50:08 gaz kernel: [40250.390656] DR0: 0000000000000000 DR1: 0000000000000000 DR2: 0000000000000000 Mar 2 10:50:08 gaz kernel: [40250.390663] DR3: 0000000000000000 DR6: 00000000ffff0ff0 DR7: 0000000000000400 Mar 2 10:50:08 gaz kernel: [40250.390671] Process munin-limits (pid: 11482, threadinfo ffff88021cc8c000, task ffff88021bf59530) Mar 2 10:50:08 gaz kernel: [40250.390681] Stack: Mar 2 10:50:08 gaz kernel: [40250.390687] ffffffff810f1d4a ffff880208c63228 0000000000000000 00007fffc2dcecc0 Mar 2 10:50:08 gaz kernel: [40250.390697] <0> 00000000024ba2b0 0000000002295010 ffffffff810f1e3d 0000000000000004 Mar 2 10:50:08 gaz kernel: [40250.390712] <0> ffff88021bf59530 ffff88021c4edc00 ffffffff812fe0b6 ffff88021c4edc60 Mar 2 10:50:08 gaz kernel: [40250.390732] Call Trace: Mar 2 10:50:08 gaz kernel: [40250.390742] [<ffffffff810f1d4a>] ? vfs_fstatat+0x2c/0x57 Mar 2 10:50:08 gaz kernel: [40250.390750] [<ffffffff810f1e3d>] ? sys_newstat+0x11/0x30 Mar 2 10:50:08 gaz kernel: [40250.390760] [<ffffffff812fe0b6>] ? do_page_fault+0x2e0/0x2fc Mar 2 10:50:08 gaz kernel: [40250.390768] [<ffffffff812fbf55>] ? page_fault+0x25/0x30 Mar 2 10:50:08 gaz kernel: [40250.390777] [<ffffffff81010b42>] ? system_call_fastpath+0x16/0x1b Mar 2 10:50:08 gaz kernel: [40250.390783] Code: Bad RIP value. Mar 2 10:50:08 gaz kernel: [40250.390791] RIP [<00000000024b03f0>] 0x24b03f0 Mar 2 10:50:08 gaz kernel: [40250.390799] RSP <ffff88021cc8dec0> Mar 2 10:50:08 gaz kernel: [40250.390805] CR2: 00000000024b03f0 Mar 2 10:50:08 gaz kernel: [40250.391051] ---[ end trace 1cc1473b539c7f6e ]--- Mar 2 11:42:20 gaz kernel: [43382.242301] php5-cgi[10963]: segfault at d81160 ip 0000000000d81160 sp 00007fff3adcb058 error 15 Mar 2 21:51:14 gaz kernel: [79916.418302] php5-cgi[20089]: segfault at 1c59dc8 ip 0000000001c59dc8 sp 00007fff9b877fb8 error 15 Mar 3 03:45:01 gaz kernel: [101143.334305] munin-update[22519] general protection ip:7f516dce204c sp:7fff6049a978 error:0 in libperl.so.5.10.1[7f516dc7d000+164000] Mar 3 11:22:37 gaz kernel: [128599.570307] php5-cgi[22888]: segfault at 36485a8 ip 00000000036485a8 sp 00007fff2d56e1c8 error 15 Mar 4 08:32:17 gaz kernel: [204779.842304] php5-cgi[22090]: segfault at 18 ip 0000000000689e5e sp 00007fff677a6a48 error 6 in php5-cgi[400000+6f9000] Mar 4 10:01:02 gaz kernel: [210104.434706] rsync[22236] general protection ip:7f14a07137f9 sp:7fff88f940b8 error:0 in libc-2.11.2.so[7f14a069d000+158000] Mar 4 11:32:22 gaz kernel: [215584.262316] BUG: unable to handle kernel paging request at 00000000ffffff9c Mar 4 11:32:22 gaz kernel: [215584.262331] IP: [<00000000ffffff9c>] 0xffffff9c Mar 4 11:32:22 gaz kernel: [215584.262343] PGD 0 Mar 4 11:32:22 gaz kernel: [215584.262350] Oops: 0010 [#2] SMP Mar 4 11:32:22 gaz kernel: [215584.262359] last sysfs file: /sys/devices/pci0000:00/0000:00:12.0/host4/target4:0:0/4:0:0:0/block/sdb/stat Mar 4 11:32:22 gaz kernel: [215584.262371] CPU 1 Mar 4 11:32:22 gaz kernel: [215584.262378] Modules linked in: cpufreq_userspace cpufreq_stats cpufreq_powersave cpufreq_conservative xt_recent xt_tcpudp iptable_nat nf_nat nf_conntrack_ipv4 nf_defrag_ipv4 ip6table_filter ip6_tables xt_DSCP xt_TCPMSS ipt_LOG ipt_REJECT iptable_mangle iptable_filter xt_multiport xt_state xt_limit xt_conntrack nf_conntrack_ftp nf_conntrack ip_tables x_tables loop snd_hda_codec_atihdmi snd_hda_intel snd_hda_codec snd_hwdep snd_pcm radeon snd_timer ttm snd drm_kms_helper soundcore drm snd_page_alloc i2c_algo_bit shpchp i2c_piix4 edac_core pcspkr k8temp evdev edac_mce_amd pci_hotplug i2c_core button ext3 jbd mbcache dm_mod powernow_k8 aacraid 3w_9xxx 3w_xxxx raid10 raid456 async_raid6_recov async_pq raid6_pq async_xor xor async_memcpy async_tx raid1 raid0 md_mod sata_nv sata_sil sata_via sd_mod crc_t10dif ata_generic ahci pata_atiixp ohci_hcd libata r8169 mii thermal ehci_hcd processor thermal_sys scsi_mod usbcore nls_base [last unloaded: scsi_wait_scan] Mar 4 11:32:22 gaz kernel: [215584.262552] Pid: 1960, comm: proxymap Tainted: G D 2.6.32-5-amd64 #1 MS-7368 Mar 4 11:32:22 gaz kernel: [215584.262563] RIP: 0010:[<00000000ffffff9c>] [<00000000ffffff9c>] 0xffffff9c Mar 4 11:32:22 gaz kernel: [215584.262573] RSP: 0018:ffff880209257e00 EFLAGS: 00010212 Mar 4 11:32:22 gaz kernel: [215584.262580] RAX: ffff8801514eb780 RBX: ffffffff810efb2d RCX: 0000000000000000 Mar 4 11:32:22 gaz kernel: [215584.262590] RDX: 0000000000000020 RSI: 0000000000000001 RDI: ffff8801514eb780 Mar 4 11:32:22 gaz kernel: [215584.262600] RBP: 00000000ffffffe9 R08: 0000000000000000 R09: 0000000000000000 Mar 4 11:32:22 gaz kernel: [215584.262611] R10: ffff880209257e78 R11: ffffffff81152c7c R12: 0000000000000001 Mar 4 11:32:22 gaz kernel: [215584.262622] R13: 0000000000008001 R14: 0000000000000024 R15: 00000000ffffff9c Mar 4 11:32:22 gaz kernel: [215584.262633] FS: 00007fca4de35700(0000) GS:ffff880008d00000(0000) knlGS:0000000000000000 Mar 4 11:32:22 gaz kernel: [215584.262644] CS: 0010 DS: 0000 ES: 0000 CR0: 0000000080050033 Mar 4 11:32:22 gaz kernel: [215584.262650] CR2: 00000000ffffff9c CR3: 00000001c9cbb000 CR4: 00000000000006e0 Mar 4 11:32:22 gaz kernel: [215584.262661] DR0: 0000000000000000 DR1: 0000000000000000 DR2: 0000000000000000 Mar 4 11:32:22 gaz kernel: [215584.262671] DR3: 0000000000000000 DR6: 00000000ffff0ff0 DR7: 0000000000000400 Mar 4 11:32:22 gaz kernel: [215584.262682] Process proxymap (pid: 1960, threadinfo ffff880209256000, task ffff88021c4b1c40) Mar 4 11:32:22 gaz kernel: [215584.262693] Stack: Mar 4 11:32:22 gaz kernel: [215584.262698] ffffffff810f8566 ffff880209257e78 ffff88021c7bf000 ffff88021c7bf0c8 Mar 4 11:32:22 gaz kernel: [215584.262709] <0> 0000800000000000 ffff88021fc0f000 ffff880209257e78 00000000fffffffe Mar 4 11:32:22 gaz kernel: [215584.262724] <0> ffffffff810e5881 ffff880209257f48 0000000000000286 ffff88021fc0f000 Mar 4 11:32:22 gaz kernel: [215584.262743] Call Trace: Mar 4 11:32:22 gaz kernel: [215584.262753] [<ffffffff810f8566>] ? do_filp_open+0xa7/0x94b Mar 4 11:32:22 gaz kernel: [215584.262763] [<ffffffff810e5881>] ? virt_to_head_page+0x9/0x2a Mar 4 11:32:22 gaz kernel: [215584.262771] [<ffffffff810f9904>] ? user_path_at+0x52/0x79 Mar 4 11:32:22 gaz kernel: [215584.262779] [<ffffffff810cfec1>] ? get_unmapped_area+0xd7/0x139 Mar 4 11:32:22 gaz kernel: [215584.262787] [<ffffffff811019d5>] ? alloc_fd+0x67/0x10c Mar 4 11:32:22 gaz kernel: [215584.262795] [<ffffffff810eceaf>] ? do_sys_open+0x55/0xfc Mar 4 11:32:22 gaz kernel: [215584.262804] [<ffffffff81010b42>] ? system_call_fastpath+0x16/0x1b Mar 4 11:32:22 gaz kernel: [215584.262811] Code: Bad RIP value. Mar 4 11:32:22 gaz kernel: [215584.262819] RIP [<00000000ffffff9c>] 0xffffff9c Mar 4 11:32:22 gaz kernel: [215584.262828] RSP <ffff880209257e00> Mar 4 11:32:22 gaz kernel: [215584.262833] CR2: 00000000ffffff9c Mar 4 11:32:22 gaz kernel: [215584.263077] ---[ end trace 1cc1473b539c7f6f ]--- As you can see there are segfaults, a general protection fault and a Kernel Oops. My first guess was that there's a Hardware problem of some sort and I asked my Hoster (it's a rented root server) to do a full hardwarecheck - they did, but couldn't find any problem. I don't know what and how they checked but their support team is usually quite good. I ran memtester and cpuburn myself and couldn't find any error either. Unfortunately I have no reliable way to reproduce these segfaults, they seem to be more or less random. On a hunch I disabled the firewall of the system and ran one of the programs that segfaulted regularily (imapsync) and it seemed to take longer to segfault than before, so the problem might be related to the network stack. Or could just be a random thing. Here are the kernel specs: # uname -a Linux gaz 2.6.32-5-amd64 #1 SMP Wed Jan 12 03:40:32 UTC 2011 x86_64 GNU/Linux # cat /etc/debian_version 6.0 # lsmod Module Size Used by cpufreq_userspace 1992 0 cpufreq_stats 2659 0 cpufreq_powersave 902 0 cpufreq_conservative 5162 0 xt_recent 5977 0 xt_tcpudp 2319 0 iptable_nat 4299 0 nf_nat 13388 1 iptable_nat nf_conntrack_ipv4 9833 3 iptable_nat,nf_nat nf_defrag_ipv4 1139 1 nf_conntrack_ipv4 ip6table_filter 2384 0 ip6_tables 15075 1 ip6table_filter xt_DSCP 1995 0 xt_TCPMSS 2919 0 ipt_LOG 4518 0 ipt_REJECT 1953 0 iptable_mangle 2817 0 iptable_filter 2258 0 xt_multiport 2267 0 xt_state 1303 0 xt_limit 1782 0 xt_conntrack 2407 0 nf_conntrack_ftp 5537 0 nf_conntrack 46535 6 iptable_nat,nf_nat,nf_conntrack_ipv4,xt_state,xt_conntrack,nf_conntrack_ftp ip_tables 13899 3 iptable_nat,iptable_mangle,iptable_filter x_tables 12845 13 xt_recent,xt_tcpudp,iptable_nat,ip6_tables,xt_DSCP,xt_TCPMSS,ipt_LOG,ipt_REJECT,xt_multiport,xt_state,xt_limit,xt_conntrack,ip_tables loop 11799 0 radeon 573996 0 ttm 39986 1 radeon drm_kms_helper 20065 1 radeon snd_hda_codec_atihdmi 2251 1 drm 142359 3 radeon,ttm,drm_kms_helper snd_hda_intel 20019 0 i2c_algo_bit 4225 1 radeon pcspkr 1699 0 i2c_piix4 8328 0 snd_hda_codec 54244 2 snd_hda_codec_atihdmi,snd_hda_intel i2c_core 15712 5 radeon,drm_kms_helper,drm,i2c_algo_bit,i2c_piix4 snd_hwdep 5380 1 snd_hda_codec snd_pcm 60503 2 snd_hda_intel,snd_hda_codec snd_timer 15582 1 snd_pcm snd 46446 5 snd_hda_intel,snd_hda_codec,snd_hwdep,snd_pcm,snd_timer soundcore 4598 1 snd evdev 7352 3 snd_page_alloc 6249 2 snd_hda_intel,snd_pcm k8temp 3283 0 edac_core 29261 0 edac_mce_amd 6433 0 shpchp 26264 0 pci_hotplug 21203 1 shpchp button 4650 0 ext3 106518 2 jbd 37085 1 ext3 mbcache 5050 1 ext3 dm_mod 53754 0 powernow_k8 10978 1 aacraid 59779 0 3w_9xxx 28684 0 3w_xxxx 20569 0 raid10 17809 0 raid456 44500 0 async_raid6_recov 5170 1 raid456 async_pq 3479 2 raid456,async_raid6_recov raid6_pq 77179 2 async_raid6_recov,async_pq async_xor 2478 3 raid456,async_raid6_recov,async_pq xor 4380 1 async_xor async_memcpy 1198 2 raid456,async_raid6_recov async_tx 1734 5 raid456,async_raid6_recov,async_pq,async_xor,async_memcpy raid1 18431 3 raid0 5517 0 md_mod 73824 7 raid10,raid456,raid1,raid0 sata_nv 19166 0 sata_sil 7412 0 sata_via 7928 0 sd_mod 29889 8 crc_t10dif 1276 1 sd_mod ata_generic 3047 0 ahci 32374 6 r8169 29229 0 mii 3210 1 r8169 thermal 11674 0 pata_atiixp 3489 0 libata 133632 6 sata_nv,sata_sil,sata_via,ata_generic,ahci,pata_atiixp ohci_hcd 19212 0 ehci_hcd 31151 0 processor 29935 1 powernow_k8 thermal_sys 11942 2 thermal,processor scsi_mod 122149 5 aacraid,3w_9xxx,3w_xxxx,sd_mod,libata usbcore 122034 3 ohci_hcd,ehci_hcd nls_base 6377 1 usbcore # free total used free shared buffers cached Mem: 8166128 1228036 6938092 0 140412 782060 -/+ buffers/cache: 305564 7860564 Swap: 2102456 0 2102456 So, basically my questions are: How can I diagnose this further? Is there any data in the log above that could help me to isolate the troublemaker? Are there any known problems with the above hardware/software I overlooked when googling for it? Is there a way to prevent the kernel from autoloading modules (I probably don't need all these modules and one of them might be the culprit)

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• Entity Frameworks 4 - Changing the model does not update the T4 self tracking template files

  - by Darren

  I am using self tracking entities and have moved the entity classes to another assembly by using 'Add as link' to point to the TT file as mentioned here. Now though, when I update the model (for instance change a property name) the template is not automatically run and so the entity class does not get updated. I can of course manually run the template to get the updates, but it would be easier if it ran automatically in the way it did before I moved the classes. Is there any way to achieve this? Darren.

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• Apache Axis WSDL2Java error - Missing <soap:fault> element

  - by Pearl

  We are integrating a third party SOAP web services in our application. The WSDL is used with SOAPUI tool, where sample requests and responses worked fine. When we try to integrate with apache Axis 1.3, where we tried WSDL2JAVA with the WSDL. We received the following error java.io.IOException: ERROR: Missing element inFault "serviceFault" in operation "serviceFault", in binding saveRegistration at org.apache.axis.wsdl.symbolTable.SymbolTable.faultsFromSOAPFault(SymbolTable.java:2858) at org.apache.axis.wsdl.symbolTable.SymbolTable.populateBindings(SymbolTable.java:2549) at org.apache.axis.wsdl.symbolTable.SymbolTable.populate(SymbolTable.java:744) at org.apache.axis.wsdl.symbolTable.SymbolTable.add(SymbolTable.java:543) at org.apache.axis.wsdl.symbolTable.SymbolTable.populate(SymbolTable.java:518) at org.apache.axis.wsdl.symbolTable.SymbolTable.populate(SymbolTable.java:495) at org.apache.axis.wsdl.gen.Parser$WSDLRunnable.run(Parser.java:361) at java.lang.Thread.run(Unknown Source) Anyone already faced this issue and solved?

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• django internationalization doesn't work

  - by xRobot

  I have: * created translation strings in the template and in the application view. * run this command: django-admin.py makemessages -l it and the file it/LC_MESSAGES/django.po has been created * translated strings in the django.po file. * run this command: django-admin.py compilemessages and I receive: processing file django.po in /home/jobber/Desktop/library/books/locale/it/LC_MESSAGES * set this in settings.py: LANGUAGE_CODE = 'it' TEMPLATE_CONTEXT_PROCESSORS = ( "django.core.context_processors.auth", "django.core.context_processors.debug", "django.core.context_processors.i18n", "django.core.context_processors.media", ) USE_I18N = True MIDDLEWARE_CLASSES = ( 'django.middleware.common.CommonMiddleware', 'django.middleware.locale.LocaleMiddleware', 'django.contrib.sessions.middleware.SessionMiddleware', 'django.contrib.auth.middleware.AuthenticationMiddleware', ) but.... translation doesn't work !! I always see english text. Why ?

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• Java - Lock Aspect Ratio of JFrame

  - by nasufara

  Is it possible to lock the aspect ratio of a JFrame in Java Swing? For example, if my window is 200px by 200px, and the user wants to resize it, I want the ratio between the width and the height at 1:1, so that if the new width is 400px, the new height is forced to 400px. I'm aware of ComponentListener and componentResized, but I'm having difficulty not getting it to go into an infinite loop of resizing, because I'm resizing the window in a resize listener. Thanks!

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• android service onBind SecurityException

  - by Metalex

  I don't know why but in some devices my service isn't allowed to bind. java.lang.RuntimeException: Unable to create application mypackage.MyApplication: java.lang.SecurityException: Unable to find app for caller android.app.ApplicationThreadProxy@41680e78 (pid=16805) when binding service Intent { cmp=mypackage/.MyService } at android.app.ActivityThread.handleBindApplication(ActivityThread.java:4394) at android.app.ActivityThread.access$1300(ActivityThread.java:141) at android.app.ActivityThread$H.handleMessage(ActivityThread.java:1294) at android.os.Handler.dispatchMessage(Handler.java:99) at android.os.Looper.loop(Looper.java:137) at android.app.ActivityThread.main(ActivityThread.java:5039) at java.lang.reflect.Method.invokeNative(Native Method) at java.lang.reflect.Method.invoke(Method.java:511) at com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteInit.java:793) at com.android.internal.os.ZygoteInit.main(ZygoteInit.java:560) at dalvik.system.NativeStart.main(Native Method) Caused by: java.lang.SecurityException: Unable to find app for caller android.app.ApplicationThreadProxy@41680e78 (pid=16805) when binding service Intent { cmp=mypackage/.MyService } at android.os.Parcel.readException(Parcel.java:1425) at android.os.Parcel.readException(Parcel.java:1379) at android.app.ActivityManagerProxy.bindService(ActivityManagerNative.java:2720) at android.app.ContextImpl.bindService(ContextImpl.java:1431) at android.app.ContextImpl.bindService(ContextImpl.java:1407) at android.content.ContextWrapper.bindService(ContextWrapper.java:473) at mypackage.MyApplication.openService(MyApplication.java:151) at mypackage.MyApplication.onCreate(MyApplication.java:110) at android.app.Instrumentation.callApplicationOnCreate(Instrumentation.java:1000) at android.app.ActivityThread.handleBindApplication(ActivityThread.java:4391) ... 10 more java.lang.SecurityException: Unable to find app for caller android.app.ApplicationThreadProxy@41680e78 (pid=16805) when binding service Intent { cmp=mypackage/.MyService } at android.os.Parcel.readException(Parcel.java:1425) at android.os.Parcel.readException(Parcel.java:1379) at android.app.ActivityManagerProxy.bindService(ActivityManagerNative.java:2720) at android.app.ContextImpl.bindService(ContextImpl.java:1431) at android.app.ContextImpl.bindService(ContextImpl.java:1407) at android.content.ContextWrapper.bindService(ContextWrapper.java:473) at mypackage.MyApplication.openService(MyApplication.java:151) at mypackage.MyApplication.onCreate(MyApplication.java:110) at android.app.Instrumentation.callApplicationOnCreate(Instrumentation.java:1000) at android.app.ActivityThread.handleBindApplication(ActivityThread.java:4391) at android.app.ActivityThread.access$1300(ActivityThread.java:141) at android.app.ActivityThread$H.handleMessage(ActivityThread.java:1294) at android.os.Handler.dispatchMessage(Handler.java:99) at android.os.Looper.loop(Looper.java:137) at android.app.ActivityThread.main(ActivityThread.java:5039) at java.lang.reflect.Method.invokeNative(Native Method) at java.lang.reflect.Method.invoke(Method.java:511) at com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteInit.java:793) at com.android.internal.os.ZygoteInit.main(ZygoteInit.java:560) at dalvik.system.NativeStart.main(Native Method) Code from MyApplication: @Override public void onCreate() { super.onCreate(); openService(); } public void openService() { Intent service = new Intent(this, MyService.class); mConnection = new ServiceConnection() { @Override public void onServiceConnected(ComponentName name, IBinder service) { mService = IMyService.Stub.asInterface(service); if (mListener != null) { mListener.onServiceStarted(mService); } } @Override public void onServiceDisconnected(ComponentName cn) { mService = null; } }; bindService(service, mConnection, Context.BIND_AUTO_CREATE); // 151 line } Please help me! Thank you!

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• Recursive calls in Pentaho Data Integration

  - by davek

  Is it possible for a step or transformation in Pentaho Data Integration to call itself, passing the results of the previous call as parameters/variables? My first thought was to create a loop in a transformation, but they don't seem to be allowed...

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• Getting float values out of PostgreSQL

  - by skymander

  I am having trouble retrieving float/real values out of PostgreSQL. For example, I would like to store: 123456789123456, the retrieve that exact same number with a select statement. table tbl (num real) insert into tbl(num) values('123456789123456'); As it is now, if I "select num from tbl" the result is "1.23457e+14" If I run "select CAST(num AS numeric) as num from tbl" the result is 123457000000000 If I run "select CAST(num AS float) as num from tbl" the result is 123456788103168 (where did this number come from) How on earth can I select the value and get "123456789123456" as the result? Thanks so much in advance

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• ClassNotFoundException error in implementing Bayesian algorithm in Apache Mahout on Hadoop

  - by Shweta

  Hi, I have a problem in executing the Bayesian algorithm in Mahout. I built it with Maven and the job file is in target directory. When run from terminal using hadoop, I'm getting the ClassNotFoundException error. What should be done? $HADOOP_HOME/bin/hadoop jar mahout-core-0.3-SNAPSHOT.job org.apache.mahout.classifier.bayes.mapreduce.bayes.bayesdriver -i test -o output Exception in thread "main" java.lang.ClassNotFoundException: org.apache.mahout.classifier.bayes.mapreduce.bayes.bayesdriver at java.net.URLClassLoader$1.run(URLClassLoader.java:200) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:188) at java.lang.ClassLoader.loadClass(ClassLoader.java:307) at java.lang.ClassLoader.loadClass(ClassLoader.java:252) at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:320) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Class.java:247) at org.apache.hadoop.util.RunJar.main(RunJar.java:149)

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• Cannot connect to TFS after adding domain controller Windows Server 2008

  - by j0nscalet

  Hey Guys- Just added a domain controller to my server that is running tfs as well. And I believe Ive really "mucked" tfs now. Before it was configured to run at HTTP://CHICAGO:8080. It looks like I need to reconfigure TFS, I am just unsure how. I can still access Sharepoint Central Administration. However when I try to get at the ServiceStatus.asmx for TFS I get 'Service is unavailable' using http://chicago:8080/. This is confusing because of the DC though, the name should be changed to chicago.myrealtybrrand.com One of my coleagues who is our resident TFS guru claims that you cannot run TFS on the same machine with a domain controller installed. Any ideas for me?

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• Script stops while waiting for user input from STDIN.gets

  - by bob c

  I'm trying to do something like this, where I have two loops going in seperate threads. The problem I am having is that in the main thread, when I use gets and the script is waiting for user input, the other thread is stopped to wait as well. class Server def initialize() @server = TCPServer.new(8080) run end def run() @thread = Thread.new(@server) { |server| while true newsock = server.accept puts "some stuff after accept!" next if !newsock # some other stuff end } end end def processCommand() # some user commands here end test = Server.new while true do processCommand(STDIN.gets) end The above is just a sample of what I want to do. Is there a way to make the main thread block while waiting for user input?

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• "TypeError: draw() takes exactly 1 non-keyword argument (3 given)"

  - by Amorack

  I wrote this code to open a window with Pyglet in Python... import pyglet from pyglet import window class Window(pyglet.window.Window): def __init__(self): super(Window, self).__init__() myLabel = pyglet.text.Label("Prototype") windowText = myLabel.draw(Window, "Hello World", font_name = "Times New Roman", font_size = 36, color = (193, 205, 193, 255)) def on_draw(self): self.clear() self.label.draw() if __name__ == '__main__': window = Window() pyglet.app.run() however every time I run it I get this error: TypeError: draw() takes exactly 1 non-keyword argument (3 given) AFAIK the "(3 given)" means the problem is with the font_size or color arguments but I'm not sure. Could someone explain what's wrong and help me make this work?

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• Netbeans not Deploying/Debugging

  - by Triztian

  Hello all, I have this problem, it's the second time it happens to me, I'm using the NB IDE 6.9.1 and after a while I was working fine, but then It stopped deploying my webapp when debugging or running the application, I don't recall messing with the ant build scripts or any strange configurations, it successfully builds the dist folder and *.war file and I am able to deploy it manually, but when I run it through the IDE it deletes the webapp folder webapps/myapp,so I cannot debug it or run it, all I get is ClassNotFoundException for my servlets. I am unsure of what extra information would help to solve this issue Its pretty annoying, I don't know how it got solved the last time, it just "went away" any help is truly appreciated.

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• Reputable geo-ip location Services

  - by Alan Storm

  Who are some of the reputable and/or stable geo-ip location service providers? I'm specing out an application that needs this functionality, and whenever I google geo-ip I get a ton of hits, but it's hard to tell who the legit providers are and who the fly-by-night folks are. Ideally I'd like something that can run without a call to an external API (i.e. regular database updates), but would be interested in hearing about experience with providers who offer live/http services. If it ran in PHP that would be great, but so long as it could run in a *nix environment that's fine. I'd prefer a paid service from a reputable provider than an awesome free service that could vanish tomorrow (free services are welcome, just convince me they're not going to vanish).

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• NTRU Pseudo-code for computing Polynomial Inverses

  - by Neville

  Hello all. I was wondering if anyone could tell me how to implement line 45 of the following pseudo-code. Require: the polynomial to invert a(x), N, and q. 1: k = 0 2: b = 1 3: c = 0 4: f = a 5: g = 0 {Steps 5-7 set g(x) = x^N - 1.} 6: g[0] = -1 7: g[N] = 1 8: loop 9: while f[0] = 0 do 10: for i = 1 to N do 11: f[i - 1] = f[i] {f(x) = f(x)/x} 12: c[N + 1 - i] = c[N - i] {c(x) = c(x) * x} 13: end for 14: f[N] = 0 15: c[0] = 0 16: k = k + 1 17: end while 18: if deg(f) = 0 then 19: goto Step 32 20: end if 21: if deg(f) < deg(g) then 22: temp = f {Exchange f and g} 23: f = g 24: g = temp 25: temp = b {Exchange b and c} 26: b = c 27: c = temp 28: end if 29: f = f XOR g 30: b = b XOR c 31: end loop 32: j = 0 33: k = k mod N 34: for i = N - 1 downto 0 do 35: j = i - k 36: if j < 0 then 37: j = j + N 38: end if 39: Fq[j] = b[i] 40: end for 41: v = 2 42: while v < q do 43: v = v * 2 44: StarMultiply(a; Fq; temp;N; v) 45: temp = 2 - temp mod v 46: StarMultiply(Fq; temp; Fq;N; v) 47: end while 48: for i = N - 1 downto 0 do 49: if Fq[i] < 0 then 50: Fq[i] = Fq[i] + q 51: end if 52: end for 53: {Inverse Poly Fq returns the inverse polynomial, Fq, through the argument list.} The function StarMultiply returns a polynomial (array) stored in the variable temp. Basically temp is a polynomial (I'm representing it as an array) and v is an integer (say 4 or 8), so what exactly does temp = 2-temp mod v equate to in normal language? How should i implement that line in my code. Can someone give me an example. The above algorithm is for computing Inverse polynomials for NTRUEncrypt key generation. The pseudo-code can be found on page 28 of this document. Thanks in advance.

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• How to best design a date/geographic proximity query on GAE?

  - by Dane

  Hi all, I'm building a directory for finding athletic tournaments on GAE with web2py and a Flex front end. The user selects a location, a radius, and a maximum date from a set of choices. I have a basic version of this query implemented, but it's inefficient and slow. One way I know I can improve it is by condensing the many individual queries I'm using to assemble the objects into bulk queries. I just learned that was possible. But I'm also thinking about a more extensive redesign that utilizes memcache. The main problem is that I can't query the datastore by location because GAE won't allow multiple numerical comparison statements (<,<=,=,) in one query. I'm already using one for date, and I'd need TWO to check both latitude and longitude, so it's a no go. Currently, my algorithm looks like this: 1.) Query by date and select 2.) Use destination function from geopy's distance module to find the max and min latitude and longitudes for supplied distance 3.) Loop through results and remove all with lat/lng outside max/min 4.) Loop through again and use distance function to check exact distance, because step 2 will include some areas outside the radius. Remove results outside supplied distance (is this 2/3/4 combination inefficent?) 5.) Assemble many-to-many lists and attach to objects (this is where I need to switch to bulk operations) 6.) Return to client Here's my plan for using memcache.. let me know if I'm way out in left field on this as I have no prior experience with memcache or server caching in general. -Keep a list in the cache filled with "geo objects" that represent all my data. These have five properties: latitude, longitude, event_id, event_type (in anticipation of expanding beyond tournaments), and start_date. This list will be sorted by date. -Also keep a dict of pointers in the cache which represent the start and end indices in the cache for all the date ranges my app uses (next week, 2 weeks, month, 3 months, 6 months, year, 2 years). -Have a scheduled task that updates the pointers daily at 12am. -Add new inserts to the cache as well as the datastore; update pointers. Using this design, the algorithm would now look like: 1.) Use pointers to slice off appropriate chunk of list based on supplied date. 2-4.) Same as above algorithm, except with geo objects 5.) Use bulk operation to select full tournaments using remaining geo objects' event_ids 6.) Assemble many-to-manys 7.) Return to client Thoughts on this approach? Many thanks for reading and any advice you can give. -Dane

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• (Doctrine-Ubuntu) Get error: doctrine-cli.php: command not found

  - by meyosef

  Hi, (Doctrine-Ubuntu) I run $ doctrine-cli.php command and get doctrine-cli.php: command not found. P

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• Batch file script to remove special characters from filenames (Windows)

  - by njreed.myopenid.com

  I have a large set of files, some of which contain special characters in the filename (e.g. ä,ö,%, and others). I'd like a script file to iterate over these files and rename them removing the special characters. I don't really mind what it does, but it could replace them with underscores for example e.g. Störung%20.doc would be renamed to St_rung_20.doc In order of preference: A DOS batch file A Windows script file to run with cscript (vbs) A third party piece of software that can be run from the command-line (i.e. no user interaction required) Another language script file, for which I'd have to install an additional script engine Background: I'm trying to encrypt these file with GnuPG on Windows but it doesn't seem to handle special characters in filenames with the --encrypt-files option.

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