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• How can I make the output from tapply() into a data.frame

  - by James Thompson

  I have a data.frame in R that looks like this: score rms template aln_id description 1 -261.410 4.951 2f22A.pdb 2F22A_1 S_00001_0000002_0 2 -231.987 21.813 1wb9A.pdb 1WB9A_4 S_00002_0000002_0 3 -263.722 4.903 2f22A.pdb 2F22A_3 S_00003_0000002_0 4 -269.681 17.732 1wbbA.pdb 1WBBA_6 S_00004_0000002_0 5 -258.621 19.098 1rxqA.pdb 1RXQA_3 S_00005_0000002_0 6 -246.805 6.889 1rxqA.pdb 1RXQA_15 S_00006_0000002_0 7 -281.300 16.262 1wbdA.pdb 1WBDA_11 S_00007_0000002_0 8 -271.666 4.193 2f22A.pdb 2F22A_2 S_00008_0000002_0 9 -277.964 13.066 1wb9A.pdb 1WB9A_5 S_00009_0000002_0 10 -261.024 17.153 1yy9A.pdb 1YY9A_2 S_00001_0000003_0 I can calculate summary statistics on the data.frame like this: > tapply( d$score, d$template, mean ) 1rxqA.pdb 1wb9A.pdb 1wbbA.pdb 1wbdA.pdb 1yy9A.pdb 2f22A.pdb -252.7130 -254.9755 -269.6810 -281.3000 -261.0240 -265.5993 Is there an easy way that I coerce this output back into a data.frame? I'd like for it to have these two columns: d$template mean I love tapply, but right now I'm cutting and pasting the results from tapply into a text file and hacking it up a bit to get the summary statistics that I want with appropriate names. This feels very wrong, and I'd like to do something better!

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• Bizarre error in php

  - by Satish

  I have a form in index.php <?php echo '<form action="update_act.php" method="POST">'; echo '<input type="submit" name="'.$row['act_name'].'" value="edit"> echo </form> ?> Here $row['act_name'] is a value fetched from database. My update_act.php file is <?php echo "Old Activity Name : ".$_POST['$row[\'act_name\']']; ?> But I am getting an error Undefined index: $row['act_name'] in C:\wamp\www\ps\activity\update_act.php. I want to have different names for different submits but I am not able to get its value in another page. Is there any way for it?

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• How to paste text and variables into a logical expression in R?

  - by Jasper

  I want to paste variables in the logical expression that I am using to subset data, but the subset function does not see them as column names when pasted (either with ot without quotes). I have a dataframe with columns named col1, col2 etc. I want to subset for the rows in which colx < 0.05 This DOES work: subsetdata<-subset(dataframe, col1<0.05) subsetdata<-subset(dataframe, col2<0.05) This does NOT work: for (k in 1:2){ subsetdata<-subset(dataframe, paste("col",k,sep="")<0.05) } for (k in 1:2){ subsetdata<-subset(dataframe, noquote(paste("col",k,sep=""))<0.05) } I can't find the answer; any suggestions?

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• Just an experiment changing the application data path

  - by Arthur

  When I change the Appication Data path in windows xp registry to a network folder I get this error message on the next system startup: "windows cannot load the user's profile but has logged you with the default profile system" The registry keys are: "[HKEY_CURRENT_USER\Software\Microsoft\Windows\CurrentVersion\Explorer\Shell Folders]" "[HKEY_CURRENT_USER\Software\Microsoft\Windows\CurrentVersion\Explorer\User Shell Folders]" under the names "AppData" and "Local AppData" I dont care if "Windows logins you with the default profile system" but is there a way to disable that message, or change the message timeout form 30 seconds to 0?,or maybe create an script that changes the Application Data path every system startup? P.S. The computer with the shared folder is always on.

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• Two view App with root template view

  - by Tieman

  Hi I was wanted to do Application witch have a root template view with a nice logo on top or something adn load other views just below (here is what I have right now: Test App ) But I have a little problem. If I'll remove a comment in file TestAppDelegate.m on line 58 //[currentView release]; Application will crash with bunch of errors when I try to switch views. But if I comment this line Project analyzer is telling me that I have a potential leak with currentView variable. Can somebody spare some time and see in that code what I did wrong?

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• What is a practical use for a closure in JavaScript?

  - by alex

  I'm trying my hardest to wrap my head around JavaScript's closures. I get that by returning an inner function, it will have access to any variable defined in it's immediate parent. Where would this be useful to me? Perhaps I haven't quite got my head around it yet. Most of the examples I have seen online don't provide any real world code, just vague examples. Can someone show me a real world use of a closure? Is this one, for example? var warnUser = function (msg) { var calledCount = 0; return function() { calledCount++; alert(msg + '\nYou have been warned ' + calledCount + ' times.'); }; }; var warnForTamper = warnUser('You can not tamper with our HTML.'); warnForTamper(); warnForTamper(); Thanks

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• gsub! Is modifying unspecified strings

  - by user335729

  I'm extracting some information from an XML file, and I want to perform some modifications on the data while keeping a copy of the original in a variable "origFile". This is what I have: require "rexml/document" include REXML doc = Document.new File.new(thePath) root = doc.root array = [] root.elements.each("dict/string") {|element| array << element} origFile = [] root.elements.each("dict"){|i| origFile << i} theBody = array[6][0].to_s theBody.gsub!(/\&lt;!-- more --\&gt;/, "----------Read More----------") The problem is that after I perform gsub! on theBody, origFile also has the modification. I don't understand why this would be or how to fix it. I would really appreciate your help.

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• Pass Session data to a Class Library without using a bunch of constructors?

  - by sah302

  Hi all, I've got my application here where literally every object has a lastUpdatedBy property. The information I put into here is the person's username, which is retrieved from the session("username") variable. How can I pass this data to my DAL in the class library? At first I was just passing in the value into each method, but this is ridiculous I thought, there should be no reason to do that every time a method is called. Then I thought well if I just put it in a constructor for each of the DAL related classes, that will make it even easier. However, even still on any given page, I've got a plethora of New() declarations, for which every single line I need to pass in the session username casted as a string. Is there an even still more efficient way of doing this so that I could only declare this in one place, and everything will know what it is and I can pass it to classes in a class library?

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• BASH Expression to replace beginning and ending of a string in one operation?

  - by swestrup

  Here's a simple problem that's been bugging me for some time. I often find I have a number of input files in some directory, and I want to construct output file names by replacing beginning and ending portions. For example, given this: source/foo.c source/bar.c source/foo_bar.c I often end up writing BASH expressions like: for f in source/*.c; do a="obj/${f##*/}" b="${a%.*}.obj" process "$f" "$b" done to generate the commands process "source/foo.c" "obj/foo.obj" process "source/bar.c "obj/bar.obj" process "source/foo_bar.c "obj/foo_bar.obj" The above works, but its a lot wordier than I like, and I would prefer to avoid the temporary variables. Ideally there would be some command that could replace the beginning and ends of a string in one shot, so that I could just write something like: for f in source/*.c; do process "$f" "obj/${f##*/%.*}.obj"; done Of course, the above doesn't work. Does anyone know something that will? I'm just trying to save myself some typing here.

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• Stopping looping thread in Java

  - by halfwarp

  I'm using a thread that is continuously reading from a queue. Something like: public void run() { Object obj; while(true) { synchronized(objectsQueue) { if(objectesQueue.isEmpty()) { try { objectesQueue.wait(); } catch (InterruptedException e) { e.printStackTrace(); } obj = objectesQueue.poll(); } } // Do something with the Object obj } } What is the best way to stop this thread? I see two options: 1 - Since Thread.stop() is deprecated, I can implement a stopThisThread() method that uses a n atomic check-condition variable. 2 - Send a Death Event object or something like that to the queue. When the thread fetches a death event it exists. I prefer the 1st way, however, I don't know when to call the stopThisThread() method, as something might be on it's way to the queue and the stop signal can arrive first (not desirable). Any suggestions?

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• How can I collapse a dataframe by some variables, taking mean across others

  - by Alex Holcombe

  I need to summarize a data frame by some variables, ignoring the others. This is sometimes referred to as collapsing. E.g. if I have a dataframe like this: Widget Type Energy egg 1 20 egg 2 30 jap 3 50 jap 1 60 Then collapsing by Widget, with Energy the dependent variable, Energy~Widget, would yield Widget Energy egg 25 jap 55 In Excel the closest functionality might be "Pivot tables" and I've worked out how to do it in python (http://alexholcombe.wordpress.com/2009/01/26/summarizing-data-by-combinations-of-variables-with-python/), and here's an example with R using doBy library to do something very related (http://www.mail-archive.com/[email protected]/msg02643.html), but is there an easy way to do the above? And even better is there anything built into the ggplot2 library to create plots that collapse across some variables?

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• C# - Getting record from a row using DataRow

  - by pinkcupcake

  I'm trying to get record of a row using DataRow. Here's what I've done so far: uID = int.Parse(Request.QueryString["id"]); PhotoDataSetTableAdapters.MembersTableAdapter mem = new PhotoDataSetTableAdapters.MembersTableAdapter(); PhotoDataSet.MembersDataTable memTable = mem.GetMemberByID(uID); DataRow[] dr = memTable.Select("userID = uID"); string uName = dr["username"].ToString(); Then I got the error: Cannot implicitly convert type 'string' to 'int' The error points to "username". I don't know what's wrong because I'm just trying to assign a string variable to a string value. Anyone figures out the reason of the error? Please help and thanks.

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• Dreamweaver recordset filter - Display all records as default

  - by Drew

  I am trying to create a simple search form to filter the results in the dynamic table. The search form is on the same pages as the results and posts to itself. I get the search string from the post variable. It is working, but I can't figure out how to set the default value to display all results. Dreamweaver automatically sets the default value to -1, and therefore no results are displayed on the initial load. How do I change this to display ALL records as default and the filter only if there is search string defined.

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• AS3 try/catch out of memory

  - by StfnoPad

  Hi, I'm loading a few huge images on my flex/as3 app, but I can't manage to catch the error when the flash player runs out of memory. Here is the what I was thinking might work (I use ???? because i dont know what to catch): try{ images = new Array(frames); for (var i:uint = 0; i < frames; i++){ imagesBA[i] = new BitmapData(width, height, false, 0x000000FF); } } catch(error:????){ Alert.show("Out of memory!"); } Any idea what ???? can be? Or does anyone knows how to catch when there is no memory for a variable?

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• How to get the list of files in a directory in a shell script?

  - by jrharshath

  Hi, I'm trying to get the contents of a directory using shell script. My script is: for entry in `ls $search_dir`; do echo $entry done where $search_dir is a relative path. However, $search_dir contains many files with whitespaces in their names. In that case, this script does not run as expected. I know I could use for entry in *, but that would only work for my current directory. I know I can change to that directory, use for entry in * then change back, but my particular situation prevents me from doing that. I have two relative paths $search_dir and $work_dir, and I have to work on both simultaneously, reading them creating/deleting files in them etc. So what do I do now? PS: I use bash.

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• Passing a web service an unknown number of parameters

  - by Billyhole

  I'm relatively new to utilizing web services. I'm trying to create one that will be accepting data from a ASP.Net form whose input controls are created dynamically at runtime and I don't how many control values will be getting passed. I'm thinking I'll be using jQuery's serialize() on the form to get the data, but what do I have the web service accept for a parameter? I thought maybe I could use serializeArray(), but still I don't know what type of variable to accept for the JavaScript array. Finally, I was thinking that I might need to create a simple data transfer object with the data before sending it along to the web service. I just didn't wanna go through with the DTO route if there was a much simpler way or an established best practice that I should follow. Thanks in advance for any direction you can provide and let me know I wasn't clear enough, or if you have any questions.

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• Jquery - Convert ascii chars back to HTML

  - by sdmiller

  I am reading data from an html file to load into a div. The problem I am having is, the program that writes the html files is converting to <br /> SO when I execute $('#items').load('/News/list.aspx'); it displays as a string on my page instead of reading it as a page break. I have tried to read the above file into a variable to do a string replace on the <br /> but it doesn't seem to work. Any suggestions?

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• acts-as-taggable-on: find tags with name LIKE, sort by tag_counts?

  - by James

  Hi I'm using the rails plugin acts-as-taggable-onand I'm trying to find the top 5 most used tags whose names match and partially match a given query. When I do User.skill_counts.order('count DESC').limit(5).where('name LIKE ?', params[:query]) This return the following error: ActiveRecord::StatementInvalid: SQLite3::SQLException: ambiguous column name: name: SELECT tags.*, COUNT(*) AS count FROM "tags" INNER JOIN users ON users.id = taggings.taggable_id LEFT OUTER JOIN taggings ON tags.id = taggings.tag_id AND taggings.context = 'skills' WHERE (taggings.taggable_type = 'User') AND (taggings.taggable_id IN(SELECT users.id FROM "users")) AND (name LIKE 'asd') GROUP BY tags.id, tags.name HAVING COUNT(*) > 0 ORDER BY count DESC LIMIT 5 But when I do User.skill_counts.first.name this returns "alliteration" I'd appreciate any help on this matter.

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• What's the Difference Between These Two Ruby Class Initialization Definitions?

  - by michaelmichael

  I'm working through a book on Ruby, and the author used a slightly different form for writing a class initialization definition than he has in previous sections of the book. It looks like this: class Ticket attr_accessor :venue, :date def initialize(venue, date) self.venue = venue self.date = date end end In previous sections of the book, it would've been defined like this: class Ticket attr_accessor :venue, :date def initialize(venue, date) @venue = venue @date = date end end Is there any functional difference between using the setter method, as in the first example, vs. using the instance variable as in the second? They both seem to work. Even mixing them up works: class Ticket attr_accessor :venue, :date def initialize(venue, date) @venue = venue self.date = date end end

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• latex and listings : highlighting some parts of the code

  - by Jérôme

  I'm using Latex and the listings package to display some C++ code (with syntax highlighting) inside a document. I need to highlight some parts of the code. This specific highlight has nothing to do with syntax highlighting, it's just some parts of the code I'd like to highlight so that the reader can focus on it. I wish I could make some variable name, for instance, displaying in bold, and on a yellow background. Here is something I did with MSWord I'd like to reproduce with Latex (of course, not the red and green underlining) : . I haven't found a way to do it with the listings package. Is it possible ?

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• How does compiler use lib file ?

  - by Xinus

  I am curious about how c/c++ compiler analyse lib files ? I mean say I create a library containing some classes, I am using that library in my main program. How does compiler know what class names are there in that library. Of course that information is present in binary format, I want to use that functionality in my program, to be specific I have a binary lib file and I want to know all classes and properties/functions present in that lib file. Is it possible ? If compiler can do that why can't some library ? thanks for any clue

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• Has Google introduced a system that allows multiple "keyword-only" domains per site?

  - by tags2k

  I've been told by a client that "a friend" told them that as of January 2010, Google allows multiple domain names that have keywords in them to be associated with a single site. To be honest this sounds rather April-foolish but I'm not sure when his "friend" told him so for the time being I have to take it at face value. I've heard nothing of this and have searched for such a thing this morning, to find nothing but warnings against this practice. Said client seems keen on buying up lots of domains today, so before he insists upon it I just want to be absolutely sure - has Google silently introduced such an allowance, or is there something else they introduced earlier this year that he could be getting confused with? Thanks for any light you can shine on this!

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• a nicer way to create structs in a loop

  - by sandra

  Hi guys, I haven't coded in C++ in ages. And recently, I'm trying to work on something involving structs. Like this typedef struct{ int x; int y; } Point; Then in a loop, I'm trying to create new structs and put pointers to them them in a list. Point* p; int i, j; while (condition){ // compute values for i and j with some function... p = new Point; p* = {i, j}; //initialize my struct. list.append(p); //append this pointer to my list. } Now, my question is it possible to simplify this? I mean, the pointer variable *p outside of the loop and calling p = new Point inside the loop. Isn't there a better/nicer syntax for this?

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• Ensuring all waiting threads complete

  - by Daniel

  I'm building a system where the progress of calling threads is dependent on the state of two variables. One variable is updated sporadically by an external source (separate from the client threads) and multiple client threads block on a condition of both variables. The system is something like this TypeB waitForB() { // Can be called by many threads. synchronized (B) { while (A <= B) { B.wait(); } A = B; return B; { } void updateB(TypeB newB) { // Called by one thread. synchronized (B) { B.update(newB); B.notifyAll(); // All blocked threads must receive new B. } } I need all the blocked threads to receive the new value of B once it has been updated. But the problem is once a single thread finishes and updates A, the waiting condition becomes true again so some of the other threads become blocked and don't receive the new value of B. Is there a way of ensuring that only the last thread that was blocked on B updates A, or another way of getting this behaviour?

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• C# Inherited member variables behaving undexpectedly

  - by Nilbert

  If I have a class like this: class A { public string fe = "A"; } And a class that inherits from it like so: class B : A { public string fe = "B"; } Visual C++ will tell me that B.fe hides A.fe so I should use the new keyword. So I change class B to look like: class B : A { public new string fe = "B"; } And then I have a function that takes an A (but, by virtue of inheritance, will also take a B) like this: class D { public static void blah(A anAObject) { Console.Writeline(A.fe); } } Even when I pass it an instance of a B object, which it will take without question, it will print "A"! Why is this, and how can I make it work how I want without setting the variable in the constructor?

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