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  • Precision error on matrix multiplication

    - by Wam
    Hello all, Coding a matrix multiplication in my program, I get precision errors (inaccurate results for large matrices). Here's my code. The current object has data stored in a flattened array, row after row. Other matrix B has data stored in a flattened array, column after column (so I can use pointer arithmetic). protected double[,] multiply (IMatrix B) { int columns = B.columns; int rows = Rows; int size = Columns; double[,] result = new double[rows,columns]; for (int row = 0; row < rows; row++) { for (int col = 0; col < columns; col++) { unsafe { fixed (float* ptrThis = data) fixed (float* ptrB = B.Data) { float* mePtr = ptrThis + row*rows; float* bPtr = ptrB + col*columns; double value = 0.0; for (int i = 0; i < size; i++) { value += *(mePtr++) * *(bPtr++); } result[row, col] = value; } } } } } Actually, the code is a bit more complicated : I do the multiply thing for several chunks (so instead of having i from 0 to size, I go from localStart to localStop), then sum up the resulting matrices. My problem : for a big matrix I get precision error : NUnit.Framework.AssertionException: Error at (0,1) expected: <6.4209571409444209E+18> but was: <6.4207619776304906E+18> Any idea ?

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  • Finding usage of jQuery UI in a big ugly codebase

    - by Daniel Magliola
    I've recently inherited the maintenance of a big, ugly codebase for a production website. Poke your eyes out ugly. And though it's big, it's mostly PHP code, it doesn't have much JS, besides a few "ajaxy" things in the UI. Our main current problem is that the site is just too heavy. Homepage weighs in at 1.6 Mb currently, so I'm trying to clean some stuff out. One of the main wasters is that every single page includes the jQuery UI library, but I don't think it's used at all. It's definitely not being used in the homepage and in most pages, so I want to only include the where necessary. I'm not really experienced with jQuery, i'm more of a Prototype guy, so I'm wondering. Is there anything I could search for that'd let me know where jQuery UI is being used? What i'm looking for is "common strings", component names, etc For example, if this was scriptaculous, i'd look for things like "Draggable", "Effect", etc. Any suggestions for jQuery UI? (Of course, if you can think of a more robust way of removing the tag from pages that don't use it without breaking everything, I'd love to hear about it) Thanks!! Daniel

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  • Refining data stored in SQLite - how to join several contacts?

    - by Krab
    Problem background Imagine this problem. You have a water molecule which is in contact with other molecules (if the contact is a hydrogen bond, there can be 4 other molecules around my water). Like in the following picture (A, B, C, D are some other atoms and dots mean the contact). A B . . O / \ H H . . C D I have the information about all the dots and I need to eliminate the water in the center and create records describing contacts of A-C, A-D, A-B, B-C, B-D, and C-D. Database structure Currently, I have the following structure in the database: Table atoms: "id" integer PRIMARY KEY, "amino" char(3) NOT NULL, (HOH for water or other value) other columns identifying the atom Table contacts: "acceptor_id" integer NOT NULL, (the atom near to my hydrogen, here C or D) "donor_id" integer NOT NULL, (here A or B) "directness" char(1) NOT NULL, (this should be D for direct and W for water-mediated) other columns about the contact, such as the distance Current solution (insufficient) Now, I'm going through all the contacts which have donor.amino = "HOH". In this sample case, this would select contacts from C and D. For each of these selected contacts, I look up contacts having the same acceptor_id as is the donor_id in the currently selected contact. From this information, I create the new contact. At the end, I delete all contacts to or from HOH. This way, I am obviously unable to create C-D and A-B contacts (the other 4 are OK). If I try a similar approach - trying to find two contacts having the same donor_id, I end up with duplicate contacts (C-D and D-C). Is there a simple way to retrieve all six contacts without duplicates? I'm dreaming about some one page long SQL query which retrievs just these six wanted rows. :-) It is preferable to conserve information about who is donor where possible, but not strictly necessary. Big thanks to all of you who read this question to this point.

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  • LDAP Query for OU's

    - by Stephen Murby
    Sorry for being an uber pain people, its all very new :( Already had alot of help on this, but don't seem to be able to see the problem, I am trying to populate a combo box with a list of all the current OU's, later to send each machine within that OU a shutdown command. (Acquiring AD OU list & Active Directory list OU's) were my previous Q's. string defaultNamingContext; //TODO 0 - Acquire and display the available OU's DirectoryEntry rootDSE = new DirectoryEntry("LDAP://RootDSE"); defaultNamingContext = rootDSE.Properties["defaultNamingContext"].Value.ToString(); DirectoryEntry entryToQuery = new DirectoryEntry ("LDAP://" + defaultNamingContext); MessageBox.Show(entryToQuery.Path.ToString()); DirectorySearcher ouSearch = new DirectorySearcher(entryToQuery.Path); ouSearch.Filter = "(objectCatergory=organizationalUnit)"; ouSearch.SearchScope = SearchScope.Subtree; ouSearch.PropertiesToLoad.Add("name"); SearchResultCollection allOUS = ouSearch.FindAll(); foreach (SearchResult oneResult in allOUS) { //comboBox1.Items.Add(oneResult.ToString()); comboBox1.Items.Add(oneResult.Properties["name"][0]); } I have been through and debugged everything i know, the searcher isn't picking up any results, hence why nothing is populated in the combo box.

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  • Close application on error

    - by poke
    I’m currently writing an application for the Android platform that requires a mounted SD card (or ExternalStorage). I know that it might not be the best way to require something like that, but the application will work with quite a lot of data, and I don’t even want to think about storing that on the device’s storage. Anyway, to ensure that the application won’t run without the external storage, I do a quick check in the activity’s onCreate method. If the card is not mounted, I want to display an error message and then quit the application. My current approach looks like this: public void onCreate ( Bundle savedInstanceState ) { super.onCreate( savedInstanceState ); setContentView( R.layout.main ); try { // initialize data storage // will raise an exception if it fails, or the SD card is not mounted // ... } catch ( Exception e ) { AlertDialog.Builder builder = new AlertDialog.Builder( this ); builder .setMessage( "There was an error: " + e.getMessage() ) .setCancelable( false ) .setNeutralButton( "Ok.", new DialogInterface.OnClickListener() { public void onClick ( DialogInterface dialog, int which ) { MyApplication.this.finish(); } } ); AlertDialog error = builder.create(); error.show(); return; } // continue ... } When I run the application, and the exception gets raised (I raise it manually to check if everything works), the error message is displayed correctly. However when I press the button, the application closes and I get an Android error, that the application was closed unexpectedly (and I should force exit). I read some topics before on closing an application, and I know that it maybe shouldn’t happen like that. But how should I instead prevent the application from continuing to run? How do you close the application correctly when an error occurs?

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  • "É" not getting converted to two bytes correctly.

    - by ChrisF
    Further to this question I've got a supplementary problem. I've found a track with an "É" in the title. My code: var playList = new StreamWriter(playlist, false, Encoding.UTF8); - private static void WriteUTF8(StreamWriter playList, string output) { byte[] byteArray = Encoding.UTF8.GetBytes(output); foreach (byte b in byteArray) { playList.Write(Convert.ToChar(b)); } } converts this to the following bytes: 195 137 which is being output as à followed by a square (which is an character that can't be printed in the current font). I've exported the same file to a playlist in Media Monkey at it writes the "É" as "É" - which I'm assuming is correct (as KennyTM pointed out). My question is, how do I get the "‰" symbol output? Do I need to select a different font and if so which one? UPDATE People seem to be missing the point. I can get the "É" written to the file using playList.WriteLine("É"); that's not the problem. The problem is that Media Monkey requires the file to be in the following format: #EXTINFUTF8:140,Yann Tiersen - Comptine D'Un Autre Été: L'Après Midi #EXTINF:140,Yann Tiersen - Comptine D'Un Autre Été: L'Après Midi #UTF8:04-Comptine D'Un Autre Été- L'Après Midi.mp3 04-Comptine D'Un Autre Été- L'Après Midi.mp3 Where all the "high-ascii" (for want of a better term) are written out as a pair of characters.

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  • Why do i get E_ACCESSDENIED when reading public shortcuts through Shell32?

    - by corvuscorax
    I'm trying to read the targets of all desktop shortcuts in a C# 4 application. The shortcuts on a windows desktop can come from more that one location, depending on whether the shortcut is created for all users or just the current user. In this specific case I'm trying to read a shortcut from the public desktop, e.g. from C:\Users\Public\Desktop\shortcut.lnk. The code is like this (path is a string contaning the path to the lnk file): var shell = new Shell32.ShellClass(); var folder = shell.NameSpace(Path.GetDirectoryName(path)); var folderItem = folder.ParseName(Path.GetFileName(path)); if (folderItem != null) { var link = (Shell32.ShellLinkObject)folderItem.GetLink; The last line throws an System.UnauthorizedAccessException, indicating that it's not allowed to read the shortcut file's contents. I have tried on shortcut files on the user's private desktop (c:\Users\username\Desktop) and that works fine. So, my questions are: (1) why is my application not allowed to /read/ the shortcut from code, when I can clearly read the contents as a user? (2) is there a way to get around this? Maybe using a special manifest file for the application? And, by the way, my OS is Windows 7, 64-bit. be well -h-

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  • How to use Profile in asp.net?

    - by Phsika
    i try to learn asp.net Profile management. But i added below xml firstName,LastName and others. But i cannot write Profile. if i try to write Profile property. drow my editor Profile : Error 1 The name 'Profile' does not exist in the current context C:\Documents and Settings\ykaratoprak\Desktop\Security\WebApp_profile\WebApp_profile\Default.aspx.cs 18 13 WebApp_profile How can i do that? <authentication mode="Windows"/> <profile> <properties> <add name="FirstName"/> <add name="LastName"/> <add name="Age"/> <add name="City"/> </properties> </profile> protected void Button1_Click(object sender, System.EventArgs e) { Profile.FirstName = TextBox1.Text; Profile.LastName = TextBox2.Text; Profile.Age = TextBox3.Text; Profile.City = TextBox4.Text; Label1.Text = "Profile stored successfully!<br />" + "<br />First Name: " + Profile.FirstName + "<br />Last Name: " + Profile.LastName + "<br />Age: " + Profile.Age + "<br />City: " + Profile.City; }

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  • EAGLContext, EAGLSharegroups, RenderBuffers, FrameBuffers, oh my!

    - by quixoto
    Hi all, I'm trying to wrap my head around the OpenGL object model on iPhone OS. I'm currently rendering into a few different UIViews (build on CAEAGLayers) on the screen. I currently have each of these as using separate EAGLContext, each of which has a color renderbuffer and a framebuffer. I'm rendering similar things in them, and I'd like to share textures between these instances to save memory overhead. My current understanding is that I could use the same setup (some number of contexts, each with a FBO/RBO) but if I spawn the later ones using the EAGLShareGroup of the first one, then I can simply use the texture names (GLuints) from the first one in the later ones. Is this accurate? If this is the case, I guess the followup question is: what's the benefit to having it be a "sharegroup"? Could I just reuse the same context, and attach multiple FBOs/RBOs to that context? I think I'm struggling with the abstraction layer of a sharegroup, which seems to share "objects" (textures and other named things) but not "state" (matrices, enabled/disabled states) which are owned by the context. What's the best way to think of this? Thanks for any enlightenment!

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  • Understanding F# Asynchronous Programming

    - by Yin Zhu
    I kind of know the syntax of asynchronous programming in F#. E.g. let downloadUrl(url:string) = async { let req = HttpWebRequest.Create(url) // Run operation asynchronously let! resp = req.AsyncGetResponse() let stream = resp.GetResponseStream() // Dispose 'StreamReader' when completed use reader = new StreamReader(stream) // Run asynchronously and then return the result return! reader.AsyncReadToEnd() } In F# expert book (and many other sources), they say like let! var = expr simply means "perform the asynchronous operation expr and bind the result to var when the operation completes. Then continue by executing the rest of the computation body" I also know that a new thread is created when performing async operation. My original understanding was that there are two parallel threads after the async operation, one doing I/O and one continuing to execute the async body at the same time. But in this example, I am confused at let! resp = req.AsyncGetResponse() let stream = resp.GetResponseStream() What happens if resp has not started yet and the thread in the async body wants to GetResponseStream? Is this a possible error? So maybe my original understanding was wrong. The quoted sentences in the F# expert book actually means that "creating a new thread, hang the current thread up, when the new thread finishes, wake up the body thread and continue", but in this case I don't see we could save any time. In the original understanding, the time is saved when there are several independent IO operations in one async block so that they could be done at the same time without intervention with each other. But here, if I don't get the response, I cannot create the stream; only I have stream, I can start reading the stream. Where's the time gained?

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  • Build number increment not reflected in AssemblyVersion

    - by awshepard
    I've browsed through some of the discussion on auto-incrementing build numbers, but in the impatience of youth decided to roll my own and re-invent the wheel. I know there are probably better ways to go about this (which I'm definitely going to investigate), but my question centers more around the Assembly and/or Version classes. My approach was to write a separate exe (BuildIncrementer) that takes a command line parameter for file name, does a regex match on the contents to grab the [assembly: AssemblyVersion...] string, do the modifications that I want (increment the build number, etc.), then write the contents back to the file. This approach works as-is. The next thing I did was in the project that I wanted to use this on, I set up a pre-build command line that is simply the command to execute that BuildIncrementer.exe on this project's AssemblyInfo.cs file. This too works, updating the assembly info as desired. The problem comes when I run the project, it sends an email containing the current version, obtained with Assembly.GetExecutingAssembly().GetName().Version.ToString(). BUT, the version showing up is the previous version. When my AssemblyInfo.cs says [assembly: AssemblyVersion("1.0.2.49667")], I get sent 1.0.1.45660, which was the previous build. Anyone have any ideas why that might be?

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  • Visual Studio 2008 freeze after save

    - by Klay
    I recently added about a dozen classes from another solution into my current solution in Visual Studio. After adding these classes, Visual Studio started freezing for about 10 seconds whenever I Save. The cursor disappears and mouse clicks and keys do nothing. Some interesting points: Even after I removed the classes, the freezing behavior is still there. Freezing occurs whether I've made changes to the code or not. This behavior ONLY seems to affect this particular version of this solution. No other solutions exhibit this behavior. Older versions of this solution are not affected. In Sysinternals Process Explorer, whenever I save in Visual Studio, the I/O bytes graph jumps from 0 to 2MB for about 5 seconds, then drops to about 1 MB for a split second, then jumps back to 2MB for another 5 seconds. Processor use goes up to about 3-5% during this time. Here are the details of my setup: C# Silverlight project (maybe 20 classes), .NET version 3.5 SP1, Visual Studio 2008 v9.0.30729 SP1. EDIT: I edited this question extensively to reflect the more detailed information. I thought this might be preferable to starting a new question.

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  • Android - sendOrderedBroadcast help

    - by Donal Rafferty
    I am trying to use a sendOrderedBroadcast in my Android app. I want to be able to send the Intent from one of my applications to another and I then want to get data back from the Application that recieves the Intent, in this case a boolean true or false. Here is the current code: Intent i = new Intent(); i.setAction(GlobalData.PROPOSE_IN_DOMAIN_ROAM_INTENT); i.putExtra("com.testnetworks.QCLEVEL", aProposedTheoreticalQoSLevel); sendOrderedBroadcast(i, null, null, null, Activity.RESULT_OK, null, null); Is this the correct way to achieve what I want? If so what do I use as the resultReceiver* parameter? (3rd parameter) And then how to I recieve data back from the Broadcast? I have done a quick google and not come up with any examples, any help or examples greatly appreciated. UPDATED CODE: sendOrderedBroadcast(i, null, domainBroadcast, null, Activity.RESULT_OK, null, null); class DomainBroadcast extends BroadcastReceiver{ @Override public void onReceive(Context arg0, Intent intent) { String action = intent.getAction(); if(GlobalData.PROPOSE_IN_DOMAIN_ROAM_INTENT.equals(action)){ Log.d("BROADCAST", "Returning broadcast"); Bundle b = intent.getExtras(); Log.d("BROADCAST", "Returning broadcast " + b.getInt("com.testnetworks.INT_TEST")); } } @Override public void onReceive(Context context, Intent intent) { String action = intent.getAction(); if(GlobalData.PROPOSE_IN_DOMAIN_ROAM_INTENT.equals(action)){ Bundle b = intent.getExtras(); int testQCLevel = b.getInt("com.testnetworks.QCLEVEL"); switch(testQCLevel){ case 1: Log.d("QCLevel ", "QCLevel = UNAVAILABLE"); break; case 2: Log.d("QCLevel ", "QCLevel = BELOWUSABILITY"); break; case 3: Log.d("QCLevel ", "QCLevel = VOICE"); break; } intent.putExtra("com.testnetworks.INT_TEST", 100); } So according to the Doc's I should recieve 100 back in my DomainBroadcast reciever but it always comes back as 0. Can anyone see why? *resultReceiver - Your own BroadcastReceiver to treat as the final receiver of the broadcast.

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  • Chord Chart - Skip to key with a click

    - by Juan Gonzales
    I have a chord chart app that basically can transpose a chord chart up and down throughout the keys, but now I would like to expand that app and allow someone to pick a key and automatically go to that key upon a click event using a function in javascript or jquery. Can someone help me figure this out? The logic seems simple enough, but I'm just not sure how to implement it. Here are my current functions that allow the user to transpose up and down... var match; var chords = ['C','C#','D','D#','E','F','F#','G','G#','A','A#','B','C','Db','D','Eb','E','F','Gb','G','Ab','A','Bb','B','C']; var chords2 = ['C','Db','D','Eb','E','F','Gb','G','Ab','A','Bb','B','C','C#','D','D#','E','F','F#','G','G#','A','A#','C']; var chordRegex = /(?:C#|D#|F#|G#|A#|Db|Eb|Gb|Ab|Bb|C|D|E|F|G|A|B)/g; function transposeUp(x) { $('.chord'+x).each(function(){ ///// initializes variables ///// var currentChord = $(this).text(); // gatheres each object var output = ""; var parts = currentChord.split(chordRegex); var index = 0; ///////////////////////////////// while (match = chordRegex.exec(currentChord)){ var chordIndex = chords2.indexOf(match[0]); output += parts[index++] + chords[chordIndex+1]; } output += parts[index]; $(this).text(output); }); } function transposeDown(x){ $('.chord'+x).each(function(){ var currentChord = $(this).text(); // gatheres each object var output = ""; var parts = currentChord.split(chordRegex); var index = 0; while (match = chordRegex.exec(currentChord)){ var chordIndex = chords2.indexOf(match[0],1); //var chordIndex = $.inArray(match[0], chords, -1); output += parts[index++] + chords2[chordIndex-1]; } output += parts[index]; $(this).text(output); }); } Any help is appreciated. Answer will be accepted! Thank You

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  • How to access a superclass's class attributes in Python?

    - by Brecht Machiels
    Have a look at the following code: class A(object): defaults = {'a': 1} def __getattr__(self, name): print('A.__getattr__') return self.get_default(name) @classmethod def get_default(cls, name): # some debug output print('A.get_default({}) - {}'.format(name, cls)) try: print(super(cls, cls).defaults) # as expected except AttributeError: #except for the base object class, of course pass # the actual function body try: return cls.defaults[name] except KeyError: return super(cls, cls).get_default(name) # infinite recursion #return cls.__mro__[1].get_default(name) # this works, though class B(A): defaults = {'b': 2} class C(B): defaults = {'c': 3} c = C() print('c.a =', c.a) I have a hierarchy of classes each with its own dictionary containing some default values. If an instance of a class doesn't have a particular attribute, a default value for it should be returned instead. If no default value for the attribute is contained in the current class's defaults dictionary, the superclass's defaults dictionary should be searched. I'm trying to implement this using the recursive class method get_default. The program gets stuck in an infinite recursion, unfortunately. My understanding of super() is obviously lacking. By accessing __mro__, I can get it to work properly though, but I'm not sure this is a proper solution. I have the feeling the answer is somewhere in this article, but I haven't been able to find it yet. Perhaps I need to resort to using a metaclass?

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  • Help with error creating SharePoint list (probably due to privilege issues)

    - by Swami
    I'm getting an error when trying to activate a webpart. It activates fine in one setup , but fails in a different one. Administrator in both. Seems like it fails because it's not able to create the list. The error is: Message: Value cannot be null. Stack Trace: at Microsoft.Sharepoint.SPRoleAssignment..ctor at ClientRequestHandler.CreateList(... private static void CreateLists() { try { SPSecurity.RunWithElevatedPrivileges(delegate() { using (SPSite site = SPContext.Current.Site) { using (SPWeb web = site.RootWeb) { string listName = LIST_NAME; bool listExist = ContainList(web, listName); if (!listExist) { AddFieldDelegate _delegate = new AddFieldDelegate(AddAttachmentFields); SPList list = CreateList(web, listName, _delegate); RegisterList(web, list, KEY); } } } }); } catch (Exception ex) { throw new Exception(String.Format("Message: {0} Stack Trace: {1}", ex.Message, ex.StackTrace.ToString())); } } private static SPList CreateList(SPWeb web, string listName, AddFieldDelegate _delegate) { web.AllowUnsafeUpdates = true; SPListTemplateType genericList = new SPListTemplateType(); genericList = SPListTemplateType.GenericList; Guid listGuid = web.Lists.Add(listName, "List", genericList); SPList list = web.Lists[listGuid]; list.Hidden = true; SPView view = _delegate(list); view.Update(); //Remove permissions from the list list.BreakRoleInheritance(false); //Make site owners the list administrators SPPrincipal principal = web.AssociatedOwnerGroup as SPPrincipal; SPRoleAssignment assignment = new SPRoleAssignment(principal); assignment.RoleDefinitionBindings.Add(web.RoleDefinitions.GetByType(SPRoleType.Administrator)); list.RoleAssignments.Add(assignment); //update list changes list.Update(); return list; }

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  • VS2008 - Find and Replace - Searches too many files.

    - by Pam Bullock
    I've used VS2008 a lot and have never had this problem. However, I started a new job and am using a new machine. Ever since I've gotten here the VS Find feature has been acting funny. I first noticed it when I did a replace all for "All Open Files". The project wouldn't build because the values had actually been replaced in other files within the solution that were not open and didn't even open after I pressed replace all. I have found that I can never use replace all on this machine because I never know what it is going to do. Even if I just do a find on "Current Document", once it's done with the document and I should get that message that says "No more matches found" it actually OPENS another random file from my solution where there is a match and keeps on going. It seems to never make any difference what "Look in" option I've chosen. My coworker has an install off the same disk and claims to not be experiencing this. We're in the middle of a stressful, huge project with a close deadline so I know my boss won't let me do a reinstall. Has anyone else ever had this happen? Anyone know a fix?? Thanks, Pam

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  • Visual Studio 2008 project file does not load because of an unexpected encoding change.

    - by Xenan
    In our team we have a database project in visual Studio 2008 which is under source control by Team Foundation Server. Every two weeks or so, after one co-worker checks in, the project file won't load on the other developers machines. The error message is: The project file could not be loaded. Data at the root level is invalid. Line 1, position 1. When I look at the project file in Notepad++, the file looks like this: ??<NUL?NULxNULmNULlNUL NULvNULeNULrNULsNULiNULoNULnNUL ... and so on (you can see <?xml version in this) whereas an normal project file looks like: <?xml version="1.0" encoding="utf-16"?> ... So probably something is wrong with the encoding of the file. This is a problem for us because it turns out to be impossible to get the file encoding correct again. The 'solution' is to throw away the project file an get the last know working version from source control. According to the file, the encoding should be UTF-16. According to Notepad++, the corrupted file is actually UTF-8. My questions are: Why is Visual Studio messing up the encoding of the project file, apparently at random times and at random machines? What should we do to prevent this? When it has happened, is there a possibility to restore the current file in the correct encoding instead of pulling an older version from source control? As a last note: the problem is with one single project file, all other project files don't expose this problem.

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  • How can I apply a PSSM efficiently?

    - by flies
    I am fitting for position specific scoring matrices (PSSM aka Position Specific Weight Matrices). The fit I'm using is like simulated annealing, where I the perturb the PSSM, compare the prediction to experiment and accept the change if it improves agreement. This means I apply the PSSM millions of times per fit; performance is critical. In my particular problem, I'm applying a PSSM for an object of length L (~8 bp) at every position of a DNA sequence of length M (~30 bp) (so there are M-L+1 valid positions). I need an efficient algorithm to apply a PSSM. Can anyone help improve performance? My best idea is to convert the DNA into some kind of a matrix so that applying the PSSM is matrix multiplication. There are efficient linear algebra libraries out there (e.g. BLAS), but I'm not sure how best to turn an M-length DNA sequence into a matrix M x 4 matrix and then apply the PSSM at each position. The solution needs to work for higher order/dinucleotide terms in the PSSM - presumably this means representing the sequence-matrix for mono-nucleotides and separately for dinucleotides. My current solution iterates over each position m, then over each letter in word from m to m+L-1, adding the corresponding term in the matrix. I'm storing the matrix as a multi-dimensional STL vector, and profiling has revealed that a lot of the computation time is just accessing the elements of the PSSM (with similar performance bottlenecks accessing the DNA sequence). If someone has an idea besides matrix multiplication, I'm all ears.

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  • compile Boost as static Universal binary lib

    - by Albert
    I want to have a static Universal binary lib of Boost. (Preferable the latest stable version, that is 1.43.0, or newer.) I found many Google hits with similar problems and possible solutions. However, most of them seems outdated. Also none of them really worked. Right now, I am trying sudo ./bjam --toolset=darwin --link=static --threading=multi \ --architecture=combined --address-model=32_64 \ --macosx-version=10.4 --macosx-version-min=10.4 \ install That compiles and install fine. However, the produced binaries seems broken. az@ip245 47 (openlierox) %file /usr/local/lib/libboost_signals.a /usr/local/lib/libboost_signals.a: current ar archive random library az@ip245 49 (openlierox) %lipo -info /usr/local/lib/libboost_signals.a input file /usr/local/lib/libboost_signals.a is not a fat file Non-fat file: /usr/local/lib/libboost_signals.a is architecture: x86_64 az@ip245 48 (openlierox) %otool -hv /usr/local/lib/libboost_signals.a Archive : /usr/local/lib/libboost_signals.a /usr/local/lib/libboost_signals.a(trackable.o): Mach header magic cputype cpusubtype caps filetype ncmds sizeofcmds flags MH_MAGIC_64 X86_64 ALL 0x00 OBJECT 3 1536 SUBSECTIONS_VIA_SYMBOLS /usr/local/lib/libboost_signals.a(connection.o): Mach header magic cputype cpusubtype caps filetype ncmds sizeofcmds flags MH_MAGIC_64 X86_64 ALL 0x00 OBJECT 3 1776 SUBSECTIONS_VIA_SYMBOLS /usr/local/lib/libboost_signals.a(named_slot_map.o): Mach header magic cputype cpusubtype caps filetype ncmds sizeofcmds flags MH_MAGIC_64 X86_64 ALL 0x00 OBJECT 3 1856 SUBSECTIONS_VIA_SYMBOLS /usr/local/lib/libboost_signals.a(signal_base.o): Mach header magic cputype cpusubtype caps filetype ncmds sizeofcmds flags MH_MAGIC_64 X86_64 ALL 0x00 OBJECT 3 1776 SUBSECTIONS_VIA_SYMBOLS /usr/local/lib/libboost_signals.a(slot.o): Mach header magic cputype cpusubtype caps filetype ncmds sizeofcmds flags MH_MAGIC_64 X86_64 ALL 0x00 OBJECT 3 1616 SUBSECTIONS_VIA_SYMBOLS Any suggestion how to get that correct?

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  • Table cell in a split-view controller - selected cell becomes deselected when called by reloadData

    - by bpapa
    I'm working on a universal app that uses a SplitViewController to present a master-detail view. In the iPad HIG on Split Views, Apple states: In general, indicate the current selection in the left pane in a persistent way. This behavior helps people understand the relationship between the item in the left pane and the contents of the right pane. This is important because the contents of the right pane can change, but they should always remain related to the item selected in the left pane. So I'm trying to maintain selection state on the left. Easy enough when the user taps, I just remove the deselectRowAtIndexPath:animated: message from tableView:didSelectRowAtIndexPath: implementation. But, I also want the selection state to show up by default (without a user tap). I wound up putting this in my tableView:cellForRowAtIndexPath: implementation: if (UI_USER_INTERFACE_IDIOM() == UIUserInterfaceIdiomPad) { if (cellShouldBeSelected) cell.selected = YES; else cell.selected = NO; } The behavior I'm seeing, is that when the cells finall appear, for a fraction of a section the cell is indeed selected, but then the selection disappears without any user interaction. Any ideas? I set the new clearsSelectionOnViewWillAppear property to NO, but that doesn't seem to fix it, and it shouldn't really matter because I'm marking the cell as selected long after viewWillAppear is called - I'm actually doing it after some network activity and then sending the table view a reloadData message.

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  • How do I forward `<Ctrl>-<Tab>` in Konsole?

    - by M. Tibbits
    I want to use intelligent tabbing in Emacs in C++ mode, but I also want to be able to insert a tab character when necessary. From other posts, I gather that the easiest way is to bind <Ctrl>-<Tab> to indent. However, it appears that Konsole in KUbuntu won't forward the <Ctrl>? My current .emacs file contains: (defun my-c-mode-common-hook () (setq c++-tab-always-indent t) (setq tab-width 4) (setq indent-tabs-mode t) ) (add-hook 'c-mode-common-hook 'my-c-mode-common-hook) (global-set-key [C-tab] 'self-insert-command) So I believe that this will bind <Ctrl>-<Tab> to inserting a tab character. However, when I run: <Ctrl>-h k <Ctrl>-<Tab> Emacs only reports that I pressed the tab key. Is there some option to Konsole (which I have searched through to no avail) or global preferences in KUbuntu that I need to set so that the <Ctrl>- is also forwarded? (It certainly forwards all of the other <Ctrl>-blah commands.)

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  • ASP.NET MVC UpdateModel doesn't update inherited public properties??

    - by mrjoltcola
    I refactored some common properties into a base class and immediately my model updates started failing. UpdateModel() and TryUpdateModel() do not seem to update inherited public properties. I cannot find detailed info on MSDN nor Google as to the rules or semantics of these methods. The docs are terse (http://msdn.microsoft.com/en-us/library/dd470933.aspx), simply stating: Updates the specified model instance using values from the controller's current value provider. Well that leads us to believe it is as simple as that. It makes no mention of limitations with inheritance. My assumption is the methods are reflecting on the top class only, ignoring base properties, but this seems to be an ugly shortcoming, if so. SOLVED: Eep, this turned out to have nothing to do with inheritance. My base class was implemented with public fields, not properties. Switching them to formal properties (adding {get; set; }) was all I needed. This has bitten me before, I keep wanting to use simple, public fields.

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  • Odd DOM Problem with Firefox

    - by Bob
    Hello. I'm experiencing an odd problem when trying to navigate through a table's rows and cells in a while loop using javascript. I'm using Firefox 3.5.7 on Win7 with Firebug enabled. I have this markup: <table> <tbody> <tr id='firstRow'><td>a</td><td>b</td><td>c</td></tr> <tr><td>a</td><td>b</td><td>c</td></tr> <tr><td>a</td><td>b</td><td>c</td></tr> </tbody> </table> And this javascript: var row = document.getElementById('firstRow'); console.log(row); // Row call 1 while (row) { console.log(row); // Row call 2 row = row.nextSibling; } The problem I'm having is that on the line commented "Row call 1", Firebug is outputting <tr id='firstRow'> as expected. However, in the while loop, Firebug is giving me <tr id='firstRow'> <TextNode textContent="\n"> It is giving me different output for the exact same row, even immediately after the while loop begins executing and nothing else touched the row. For subsequent rows, it of course does not have id='firstRow' as an attribute. The bigger problem this is giving me is that if I'm in the while loop, and I want to access a particular cell of the current row using row.cells[0], Firebug will give me an error that row.cells is undefined. I want to know if someone could shed some light on this situation I am experiencing.

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  • Home link on the menu does not highlight

    - by strangeloops
    My menu shows the active links when clicked on it except for the home link (http://www.obsia.com). It is never highlighted. I tried playing around but I can't seem to figure it out. This is the jquery code I used to highlight the links? $(function(){ var path = location.pathname.substring(1); if ( path ) $('.nav a[href$="' + path + '"]').attr('class', 'active'); }); I also have another menu on the products pages where I would like to highlight the parents of the siblings and the our products on the global menu. This is the jquery code for the products menu: $(function() { var pathname = location.pathname; var highlight; //highlight home if(pathname == "") highlight = $('ul#accordion > li:first > a:first'); else { var path = pathname.substring(1); if (path) highlight = $('ul#accordion a[href$="' + path + '"]'); }highlight.attr('class', 'active'); // hide 2nd, 3rd, ... level menus $('ul#accordion ul').hide(); // show child menu on click $('ul#accordion > li > a.product_menu').click(function() { //minor improvement $(this).siblings('ul').toggle("slow"); return false; }); //open to current group (highlighted link) by show all parent ul's $('a.active').parents('ul').show(); $('a.active').parents('h2 a').css({'color':'#ff8833'}); //if you only have a 2 level deep navigation you could //use this instead //$('a.selected').parents("ul").eq(0).show(); }); }); I tried adding this: $(this).parents('ul').addClass('active'); but that does not seem to do the trick? Does anybody have a simple way of accomplishing it? Any help would be appreciated from you guys. Kind Regards, G

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