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  • How should I create a mutable, varied jtree with arbitrary/generic category nodes?

    - by Pureferret
    Please note: I don't want coding help here, I'm on Programmers for a reason. I want to improve my program planning/writing skills not (just) my understanding of Java. I'm trying to figure out how to make a tree which has an arbitrary category system, based on the skills listed for this LARP game here. My previous attempt had a bool for whether a skill was also a category. Trying to code around that was messy. Drawing out my tree I noticed that only my 'leaves' were skills and I'd labeled the others as categories. Explanation of tree: The Tree is 'born' with a set of hard coded highest level categories (Weapons, Physical and Mental, Medical etc.). Fro mthis the user needs to be able to add a skill. Ultimately they want to add 'One-handed Sword Specialisation' for instance. To do so you'd ideally click 'add' with Weapons selected and then select One-handed from a combobox, then click add again and enter a name in a text field. Then click add again to add a 'level' or 'tier' first proficiency, then specialisation. Of course if you want to buy a different skill it's completely different, which is what I'm having trouble getting my head around let alone programming in. What is a good system for describing this sort of tree in code? All the other JTree examples I've seen have some predictable pattern, and I don't want to have to code this all in 'literals'. Should I be using abstract classes? Interfaces? How can I make this sort of cluster of objects extensible when I add in other skills not listed above that behave differently? If there is not a good system to use, if there a good process for working out how to do this sort of thing?

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  • Count function on tree structure (non-binary)

    - by Spevy
    I am implementing a tree Data structure in c# based (largely on Dan Vanderboom's Generic implementation). I am now considering approach on handling a Count property which Dan does not implement. The obvious and easy way would be to use a recursive call which Traverses the tree happily adding up nodes (or iteratively traversing the tree with a Queue and counting nodes if you prefer). It just seems expensive. (I also may want to lazy load some of my nodes down the road). I could maintain a count at the root node. All children would traverse up to and/or hold a reference to the root, and update a internally settable count property on changes. This would push the iteration problem to when ever I want to break off a branch or clear all children below a given node. Generally less expensive, and puts the heavy lifting what I think will be less frequently called functions. Seems a little brute force, and that usually means exception cases I haven't thought of yet, or bugs if you prefer. Does anyone have an example of an implementation which keeps a count for an Unbalanced and/or non-binary tree structure rather than counting on the fly? Don't worry about the lazy load, or language. I am sure I can adjust the example to fit my specific needs. EDIT: I am curious about an example, rather than instructions or discussion. I know this is not technically difficult...

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  • Web Crawler for Learnign Topics on Wikipedia

    - by Chris Okyen
    When I want to learn a vast topic on wikipedia, I don't know where to start. For instance say I want to learn about Binary Stars, I then have to know other things linked on that pages and linked pages on all the linked pages and so on for the specified number of levels. I want to write a web crawler like HTTracker or something similiar, that will display a heiarchy of the links on a certain page and the links on those linked pages.I wish to use as much prewritten code as possible. Here is an example: Pretending we are bending the rules by grabing links from only the first sentence of each pages The example archives and "processes" two levels deep The page is Ternary operation The First Level In mathematics a ternary operation is an N-ary operation The Second Level Under Mathmatics: Mathematics (from Greek µ???µa máthema, “knowledge, study, learning”) is the abstract study of topics encompassing quantity, structure, space, change and others; it has no generally accepted definition. Under N-ary In logic,mathematics, and computer science, the arity i/'ær?ti/ of a function or operation is the number of arguments or operands that the function takes Under Operation In its simplest meaning in mathematics and logic, an operation is an action or procedure which produces a new value from one or more input values ------------------------------------------------------------------------- I need some way to determine what oder to approach all these wiki pages to learn the concept ( in this case ternary operations )... Following along with this exmpakle, one way to show the path to read would a printout flowout like so: This shows that the first sentence of the Mathematics page doesn't link to the first sentence of pages linked on ternary page two levels deep. (Please tell me how I should explain this ) --- In otherwords, the child node of the top pages first sentence, ternary_operation, does not have any child nodes that reference the children of the top pages other children nodes- N-ary and operation. Thus it is safe to read this first. Since N-ary has a link to operations we shoudl read the operation page second and finally read the N-ary page last. Again, I wish to use as much prewritten code as possible, and was wondering what language to use and what would be the simpliest way to go about doing this if there isn't already somethign out there? Thank You!

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  • Performing a Depth First Search iteratively using async/parallel processing?

    - by Prabhu
    Here is a method that does a DFS search and returns a list of all items given a top level item id. How could I modify this to take advantage of parallel processing? Currently, the call to get the sub items is made one by one for each item in the stack. It would be nice if I could get the sub items for multiple items in the stack at the same time, and populate my return list faster. How could I do this (either using async/await or TPL, or anything else) in a thread safe manner? private async Task<IList<Item>> GetItemsAsync(string topItemId) { var items = new List<Item>(); var topItem = await GetItemAsync(topItemId); Stack<Item> stack = new Stack<Item>(); stack.Push(topItem); while (stack.Count > 0) { var item = stack.Pop(); items.Add(item); var subItems = await GetSubItemsAsync(item.SubId); foreach (var subItem in subItems) { stack.Push(subItem); } } return items; } I was thinking of something along these lines, but it's not coming together: var tasks = stack.Select(async item => { items.Add(item); var subItems = await GetSubItemsAsync(item.SubId); foreach (var subItem in subItems) { stack.Push(subItem); } }).ToList(); if (tasks.Any()) await Task.WhenAll(tasks); The language I'm using is C#.

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  • Patterns for a tree of persistent data with multiple storage options?

    - by Robin Winslow
    I have a real-world problem which I'll try to abstract into an illustrative example. So imagine I have data objects in a tree, where parent objects can access children, and children can access parents: // Interfaces interface IParent<TChild> { List<TChild> Children; } interface IChild<TParent> { TParent Parent; } // Classes class Top : IParent<Middle> {} class Middle : IParent<Bottom>, IChild<Top> {} class Bottom : IChild<Middle> {} // Usage var top = new Top(); var middles = top.Children; // List<Middle> foreach (var middle in middles) { var bottoms = middle.Children; // List<Bottom> foreach (var bottom in bottoms) { var middle = bottom.Parent; // Access the parent var top = middle.Parent; // Access the grandparent } } All three data objects have properties that are persisted in two data stores (e.g. a database and a web service), and they need to reflect and synchronise with the stores. Some objects only request from the web service, some only write to it. Data Mapper My favourite pattern for data access is Data Mapper, because it completely separates the data objects themselves from the communication with the data store: class TopMapper { public Top FetchById(int id) { var top = new Top(DataStore.TopDataById(id)); top.Children = MiddleMapper.FetchForTop(Top); return Top; } } class MiddleMapper { public Middle FetchById(int id) { var middle = new Middle(DataStore.MiddleDataById(id)); middle.Parent = TopMapper.FetchForMiddle(middle); middle.Children = BottomMapper.FetchForMiddle(bottom); return middle; } } This way I can have one mapper per data store, and build the object from the mapper I want, and then save it back using the mapper I want. There is a circular reference here, but I guess that's not a problem because most languages can just store memory references to the objects, so there won't actually be infinite data. The problem with this is that every time I want to construct a new Top, Middle or Bottom, it needs to build the entire object tree within that object's Parent or Children property, with all the data store requests and memory usage that that entails. And in real life my tree is much bigger than the one represented here, so that's a problem. Requests in the object In this the objects request their Parents and Children themselves: class Middle { private List<Bottom> _children = null; // cache public List<Bottom> Children { get { _children = _children ?? BottomMapper.FetchForMiddle(this); return _children; } set { BottomMapper.UpdateForMiddle(this, value); _children = value; } } } I think this is an example of the repository pattern. Is that correct? This solution seems neat - the data only gets requested from the data store when you need it, and thereafter it's stored in the object if you want to request it again, avoiding a further request. However, I have two different data sources. There's a database, but there's also a web service, and I need to be able to create an object from the web service and save it back to the database and then request it again from the database and update the web service. This also makes me uneasy because the data objects themselves are no longer ignorant of the data source. We've introduced a new dependency, not to mention a circular dependency, making it harder to test. And the objects now mask their communication with the database. Other solutions Are there any other solutions which could take care of the multiple stores problem but also mean that I don't need to build / request all the data every time?

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  • Traverse tree with results. Maybe type in Java?

    - by Angelo.Hannes
    I need to check a tree's node state. It can either be OK or NOT_OK. But that state is dependent on its children. So for a node to be OK, every of its children needs to be OK. If one or more of its children is NOT_OK the whole node is NOT_OK. To determine the state of a node I need to aggregate some properties of the node. So I thought of two possible implementations. And they are more or less covered in this question: Why is Option/Maybe considered a good idea and checked exceptions are not? Exception I could pass the properties up the recursion path, and throw an exception if something went wrong. Maybe I implement an Maybe type and let it either hold an error or the aggregated properties. Maybe it is more an Either. I tend towards the last option. And I'm thinking of an enum with two objects. Where I can additionally set those aggregated properties. Am I on the right track? I'm not familiar with the new JDK8 functional stuff. But I'm stuck on JDK7 anyway, so please focus on JDK7.

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  • How to find optimal path visit every node with parallel workers complicated by dynamic edge costs?

    - by Aaron Anodide
    Say you have an acyclic directed graph with weighted edges and create N workers. My goal is to calculate the optimal way those workers can traverse the entire graph in parralel. However, edge costs may change along the way. Example: A -1-> B A -2-> C B -3-> C (if A has already been visited) B -5-> C (if A has not already been visited) Does what I describe lend itself to a standard algorithmic approach, or alternately can someone suggest if I'm looking at this in an inherently flawed way (i have an intuition I might be)?

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  • Examples of Hierarchical-Model-View-Controller (HMVC)?

    - by Stephen
    Hi, I'm interested in the Presentation-Abstraction-Control? (aka Hierarchical-Model-View-Controller (HMVC)) Architectural Pattern for constructing complex user interfaces (GUI or web) and was wondering if anyone was aware of any examples in the wild where I could read the code? My list so far; Cairngorm framework for Adobe Flex any others I'm aware of the JavaWorld article and associated letters cited in the wikipedia article http://en.wikipedia.org/wiki/Presentation-abstraction-control

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  • Detect if 2 HTML fragments have identical hierarchical structure

    - by sergzach
    An example of fragments that have identical hierarchical structure: (1) <div> <span>It's a message</span> </div> (2) <div> <span class='bold'>This is a new text</span> </div> An example of fragments that have different structure: (1) <div> <span><b>It's a message</b></span> </div> (2) <div> <span>This is a new text</span> </div> So, fragments with a similar structure correspond to one hierarchical tree (the same tag names, the same hierarchical structure). How can I detect if 2 elements (html fragments) have the same structure simply with lxml? I have a function that does not work properly for some more difficult case (than the example): def _is_equal( el1, el2 ): # input: 2 elements with possible equal structure and tag names # e.g. root = lxml.html.fromstring( buf ) # el1 = root[ 0 ] # el2 = root[ 1 ] # move from top to bottom, compare elements result = False if el1.tag == el2.tag: # has no children if len( el1 ) == len( el2 ): if len( el1 ) == 0: return True else: # iterate one of them, for example el1 i = 0 for child1 in el1: child2 = el2[ i ] is_equal2 = _is_equal( child1, child2 ) if not is_equal2: return False return True else: return False else: return False The code fails to detect that 2 divs with class='tovar2' have an identical structure: <body> <div class="tovar2"> <h2 class="new"> <a href="http://modnyedeti-krsk.ru/magazin/product/333193003"> ?????? ?/? </a> </h2> <ul class="art"> <li> ???????: <span>1759</span> </li> </ul> <div> <div class="wrap" style="width:180px;"> <div class="new"> <img src="shop_files/new-t.png" alt=""> </div> <a class="highslide" href="http://modnyedeti-krsk.ru/d/459730/d/820.jpg" onclick="return hs.expand(this)"> <img src="shop_files/fr_5.gif" style="background:url(/d/459730/d/548470803_5.jpg) 50% 50% no-repeat scroll;" alt="?????? ?/?" height="160" width="180"> </a> </div> </div> <form action="" onsubmit="return addProductForm(17094601,333193003,3150.00,this,false);"> <ul class="bott "> <li class="price">????:<br> <span> <b> 3 150 </b> ???. </span> </li> <li class="amount">???-??:<br><input class="number" onclick="this.select()" value="1" name="product_amount" type="text"> </li> <li class="buy"><input value="" type="submit"> </li> </ul> </form> </div> <div class="tovar2"> <h2 class="new"> <a href="http://modnyedeti-krsk.ru/magazin/product/333124803">?????? ?/?</a> </h2> <ul class="art"> <li> ???????: <span>1759</span> </li> </ul> <div> <div class="wrap" style="width:180px;"> <div class="new"> <img src="shop_files/new-t.png" alt=""> </div> <a class="highslide" href="http://modnyedeti-krsk.ru/d/459730/d/820.jpg" onclick="return hs.expand(this)"> <img src="shop_files/fr_5.gif" style="background:url(/d/459730/d/548470803_5.jpg) 50% 50% no-repeat scroll;" alt="?????? ?/?" height="160" width="180"> </a> </div> </div> <form action="" onsubmit="return addProductForm(17094601,333124803,3150.00,this,false);"> <ul class="bott "> <li class="price">????:<br> <span> <b>3 150</b> ???. </span> </li> <li class="amount">???-??:<br><input class="number" onclick="this.select()" value="1" name="product_amount" type="text"> </li> <li class="buy"> <input value="" type="submit"> </li> </ul> </form> </div> </body>

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  • Binary Search Tree for specific intent

    - by Luís Guilherme
    We all know there are plenty of self-balancing binary search trees (BST), being the most famous the Red-Black and the AVL. It might be useful to take a look at AA-trees and scapegoat trees too. I want to do deletions insertions and searches, like any other BST. However, it will be common to delete all values in a given range, or deleting whole subtrees. So: I want to insert, search, remove values in O(log n) (balanced tree). I would like to delete a subtree, keeping the whole tree balanced, in O(log n) (worst-case or amortized) It might be useful to delete several values in a row, before balancing the tree I will most often insert 2 values at once, however this is not a rule (just a tip in case there is a tree data structure that takes this into account) Is there a variant of AVL or RB that helps me on this? Scapegoat-trees look more like this, but would also need some changes, anyone who has got experience on them can share some thougts? More precisely, which balancing procedure and/or removal procedure would help me keep this actions time-efficient?

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  • Nginx and client certificates from hierarchical OpenSSL-based certification authorities

    - by Fmy Oen
    I'm trying to set up root certification authority, subordinate certification authority and to generate the client certificates signed by any of this CA that nginx 0.7.67 on Debian Squeeze will accept. My problem is that root CA signed client certificate works fine while subordinate CA signed one results in "400 Bad Request. The SSL certificate error". Step 1: nginx virtual host configuration: server { server_name test.local; access_log /var/log/nginx/test.access.log; listen 443 default ssl; keepalive_timeout 70; ssl_protocols SSLv3 TLSv1; ssl_ciphers AES128-SHA:AES256-SHA:RC4-SHA:DES-CBC3-SHA:RC4-MD5; ssl_certificate /etc/nginx/ssl/server.crt; ssl_certificate_key /etc/nginx/ssl/server.key; ssl_client_certificate /etc/nginx/ssl/client.pem; ssl_verify_client on; ssl_session_cache shared:SSL:10m; ssl_session_timeout 5m; location / { proxy_pass http://testsite.local/; } } Step 2: PKI infrastructure organization for both root and subordinate CA (based on this article): # mkdir ~/pki && cd ~/pki # mkdir rootCA subCA # cp -v /etc/ssl/openssl.cnf rootCA/ # cd rootCA/ # mkdir certs private crl newcerts; touch serial; echo 01 > serial; touch index.txt; touch crlnumber; echo 01 > crlnumber # cp -Rvp * ../subCA/ Almost no changes was made to rootCA/openssl.cnf: [ CA_default ] dir = . # Where everything is kept ... certificate = $dir/certs/rootca.crt # The CA certificate ... private_key = $dir/private/rootca.key # The private key and to subCA/openssl.cnf: [ CA_default ] dir = . # Where everything is kept ... certificate = $dir/certs/subca.crt # The CA certificate ... private_key = $dir/private/subca.key # The private key Step 3: Self-signed root CA certificate generation: # openssl genrsa -out ./private/rootca.key -des3 2048 # openssl req -x509 -new -key ./private/rootca.key -out certs/rootca.crt -config openssl.cnf Enter pass phrase for ./private/rootca.key: You are about to be asked to enter information that will be incorporated into your certificate request. What you are about to enter is what is called a Distinguished Name or a DN. There are quite a few fields but you can leave some blank For some fields there will be a default value, If you enter '.', the field will be left blank. ----- Country Name (2 letter code) [AU]: State or Province Name (full name) [Some-State]: Locality Name (eg, city) []: Organization Name (eg, company) [Internet Widgits Pty Ltd]: Organizational Unit Name (eg, section) []: Common Name (eg, YOUR name) []:rootca Email Address []: Step 4: Subordinate CA certificate generation: # cd ../subCA # openssl genrsa -out ./private/subca.key -des3 2048 # openssl req -new -key ./private/subca.key -out subca.csr -config openssl.cnf Enter pass phrase for ./private/subca.key: You are about to be asked to enter information that will be incorporated into your certificate request. What you are about to enter is what is called a Distinguished Name or a DN. There are quite a few fields but you can leave some blank For some fields there will be a default value, If you enter '.', the field will be left blank. ----- Country Name (2 letter code) [AU]: State or Province Name (full name) [Some-State]: Locality Name (eg, city) []: Organization Name (eg, company) [Internet Widgits Pty Ltd]: Organizational Unit Name (eg, section) []: Common Name (eg, YOUR name) []:subca Email Address []: Please enter the following 'extra' attributes to be sent with your certificate request A challenge password []: An optional company name []: Step 5: Subordinate CA certificate signing by root CA certificate: # cd ../rootCA/ # openssl ca -in ../subCA/subca.csr -extensions v3_ca -config openssl.cnf Using configuration from openssl.cnf Enter pass phrase for ./private/rootca.key: Check that the request matches the signature Signature ok Certificate Details: Serial Number: 1 (0x1) Validity Not Before: Feb 4 10:49:43 2013 GMT Not After : Feb 4 10:49:43 2014 GMT Subject: countryName = AU stateOrProvinceName = Some-State organizationName = Internet Widgits Pty Ltd commonName = subca X509v3 extensions: X509v3 Subject Key Identifier: C9:E2:AC:31:53:81:86:3F:CD:F8:3D:47:10:FC:E5:8E:C2:DA:A9:20 X509v3 Authority Key Identifier: keyid:E9:50:E6:BF:57:03:EA:6E:8F:21:23:86:BB:44:3D:9F:8F:4A:8B:F2 DirName:/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca serial:9F:FB:56:66:8D:D3:8F:11 X509v3 Basic Constraints: CA:TRUE Certificate is to be certified until Feb 4 10:49:43 2014 GMT (365 days) Sign the certificate? [y/n]:y 1 out of 1 certificate requests certified, commit? [y/n]y ... # cd ../subCA/ # cp -v ../rootCA/newcerts/01.pem certs/subca.crt Step 6: Server certificate generation and signing by root CA (for nginx virtual host): # cd ../rootCA # openssl genrsa -out ./private/server.key -des3 2048 # openssl req -new -key ./private/server.key -out server.csr -config openssl.cnf Enter pass phrase for ./private/server.key: You are about to be asked to enter information that will be incorporated into your certificate request. What you are about to enter is what is called a Distinguished Name or a DN. There are quite a few fields but you can leave some blank For some fields there will be a default value, If you enter '.', the field will be left blank. ----- Country Name (2 letter code) [AU]: State or Province Name (full name) [Some-State]: Locality Name (eg, city) []: Organization Name (eg, company) [Internet Widgits Pty Ltd]: Organizational Unit Name (eg, section) []: Common Name (eg, YOUR name) []:test.local Email Address []: Please enter the following 'extra' attributes to be sent with your certificate request A challenge password []: An optional company name []: # openssl ca -in server.csr -out certs/server.crt -config openssl.cnf Step 7: Client #1 certificate generation and signing by root CA: # openssl genrsa -out ./private/client1.key -des3 2048 # openssl req -new -key ./private/client1.key -out client1.csr -config openssl.cnf Enter pass phrase for ./private/client1.key: You are about to be asked to enter information that will be incorporated into your certificate request. What you are about to enter is what is called a Distinguished Name or a DN. There are quite a few fields but you can leave some blank For some fields there will be a default value, If you enter '.', the field will be left blank. ----- Country Name (2 letter code) [AU]: State or Province Name (full name) [Some-State]: Locality Name (eg, city) []: Organization Name (eg, company) [Internet Widgits Pty Ltd]: Organizational Unit Name (eg, section) []: Common Name (eg, YOUR name) []:Client #1 Email Address []: Please enter the following 'extra' attributes to be sent with your certificate request A challenge password []: An optional company name []: # openssl ca -in client1.csr -out certs/client1.crt -config openssl.cnf Step 8: Client #1 certificate converting to PKCS12 format: # openssl pkcs12 -export -out certs/client1.p12 -inkey private/client1.key -in certs/client1.crt -certfile certs/rootca.crt Step 9: Client #2 certificate generation and signing by subordinate CA: # cd ../subCA/ # openssl genrsa -out ./private/client2.key -des3 2048 # openssl req -new -key ./private/client2.key -out client2.csr -config openssl.cnf Enter pass phrase for ./private/client2.key: You are about to be asked to enter information that will be incorporated into your certificate request. What you are about to enter is what is called a Distinguished Name or a DN. There are quite a few fields but you can leave some blank For some fields there will be a default value, If you enter '.', the field will be left blank. ----- Country Name (2 letter code) [AU]: State or Province Name (full name) [Some-State]: Locality Name (eg, city) []: Organization Name (eg, company) [Internet Widgits Pty Ltd]: Organizational Unit Name (eg, section) []: Common Name (eg, YOUR name) []:Client #2 Email Address []: Please enter the following 'extra' attributes to be sent with your certificate request A challenge password []: An optional company name []: # openssl ca -in client2.csr -out certs/client2.crt -config openssl.cnf Step 10: Client #2 certificate converting to PKCS12 format: # openssl pkcs12 -export -out certs/client2.p12 -inkey private/client2.key -in certs/client2.crt -certfile certs/subca.crt Step 11: Passing server certificate and private key to nginx (performed with OS superuser privileges): # cd ../rootCA/ # cp -v certs/server.crt /etc/nginx/ssl/ # cp -v private/server.key /etc/nginx/ssl/ Step 12: Passing root and subordinate CA certificates to nginx (performed with OS superuser privileges): # cat certs/rootca.crt > /etc/nginx/ssl/client.pem # cat ../subCA/certs/subca.crt >> /etc/nginx/ssl/client.pem client.pem file look like this: # cat /etc/nginx/ssl/client.pem -----BEGIN CERTIFICATE----- MIID6TCCAtGgAwIBAgIJAJ/7VmaN048RMA0GCSqGSIb3DQEBBQUAMFYxCzAJBgNV BAYTAkFVMRMwEQYDVQQIEwpTb21lLVN0YXRlMSEwHwYDVQQKExhJbnRlcm5ldCBX aWRnaXRzIFB0eSBMdGQxDzANBgNVBAMTBnJvb3RjYTAeFw0xMzAyMDQxMDM1NTda ... -----END CERTIFICATE----- Certificate: Data: Version: 3 (0x2) Serial Number: 1 (0x1) ... -----BEGIN CERTIFICATE----- MIID4DCCAsigAwIBAgIBATANBgkqhkiG9w0BAQUFADBWMQswCQYDVQQGEwJBVTET MBEGA1UECBMKU29tZS1TdGF0ZTEhMB8GA1UEChMYSW50ZXJuZXQgV2lkZ2l0cyBQ dHkgTHRkMQ8wDQYDVQQDEwZyb290Y2EwHhcNMTMwMjA0MTA0OTQzWhcNMTQwMjA0 ... -----END CERTIFICATE----- It looks like everything is working fine: # service nginx reload # Reloading nginx configuration: Enter PEM pass phrase: # nginx. # Step 13: Installing *.p12 certificates in browser (Firefox in my case) gives the problem I've mentioned above. Client #1 = 200 OK, Client #2 = 400 Bad request/The SSL certificate error. Any ideas what should I do? Update 1: Results of SSL connection test attempts: # openssl s_client -connect test.local:443 -CAfile ~/pki/rootCA/certs/rootca.crt -cert ~/pki/rootCA/certs/client1.crt -key ~/pki/rootCA/private/client1.key -showcerts Enter pass phrase for tmp/testcert/client1.key: CONNECTED(00000003) depth=1 C = AU, ST = Some-State, O = Internet Widgits Pty Ltd, CN = rootca verify return:1 depth=0 C = AU, ST = Some-State, O = Internet Widgits Pty Ltd, CN = test.local verify return:1 --- Certificate chain 0 s:/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=test.local i:/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca -----BEGIN CERTIFICATE----- MIIDpjCCAo6gAwIBAgIBAjANBgkqhkiG9w0BAQUFADBWMQswCQYDVQQGEwJBVTET MBEGA1UECBMKU29tZS1TdGF0ZTEhMB8GA1UEChMYSW50ZXJuZXQgV2lkZ2l0cyBQ dHkgTHRkMQ8wDQYDVQQDEwZyb290Y2EwHhcNMTMwMjA0MTEwNjAzWhcNMTQwMjA0 ... -----END CERTIFICATE----- 1 s:/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca i:/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca -----BEGIN CERTIFICATE----- MIID6TCCAtGgAwIBAgIJAJ/7VmaN048RMA0GCSqGSIb3DQEBBQUAMFYxCzAJBgNV BAYTAkFVMRMwEQYDVQQIEwpTb21lLVN0YXRlMSEwHwYDVQQKExhJbnRlcm5ldCBX aWRnaXRzIFB0eSBMdGQxDzANBgNVBAMTBnJvb3RjYTAeFw0xMzAyMDQxMDM1NTda ... -----END CERTIFICATE----- --- Server certificate subject=/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=test.local issuer=/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca --- Acceptable client certificate CA names /C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca /C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=subca --- SSL handshake has read 3395 bytes and written 2779 bytes --- New, TLSv1/SSLv3, Cipher is AES256-SHA Server public key is 2048 bit Secure Renegotiation IS supported Compression: zlib compression Expansion: zlib compression SSL-Session: Protocol : TLSv1 Cipher : AES256-SHA Session-ID: 15BFC2029691262542FAE95A48078305E76EEE7D586400F8C4F7C516B0F9D967 Session-ID-ctx: Master-Key: 23246CF166E8F3900793F0A2561879E5DB07291F32E99591BA1CF53E6229491FEAE6858BFC9AACAF271D9C3706F139C7 Key-Arg : None PSK identity: None PSK identity hint: None SRP username: None TLS session ticket: 0000 - c2 5e 1d d2 b5 6d 40 23-b2 40 89 e4 35 75 70 07 .^...m@#[email protected]. 0010 - 1b bb 2b e6 e0 b5 ab 10-10 bf 46 6e aa 67 7f 58 ..+.......Fn.g.X 0020 - cf 0e 65 a4 67 5a 15 ba-aa 93 4e dd 3d 6e 73 4c ..e.gZ....N.=nsL 0030 - c5 56 f6 06 24 0f 48 e6-38 36 de f1 b5 31 c5 86 .V..$.H.86...1.. ... 0440 - 4c 53 39 e3 92 84 d2 d0-e5 e2 f5 8a 6a a8 86 b1 LS9.........j... Compression: 1 (zlib compression) Start Time: 1359989684 Timeout : 300 (sec) Verify return code: 0 (ok) --- Everything seems fine with Client #2 and root CA certificate but request returns 400 Bad Request error: # openssl s_client -connect test.local:443 -CAfile ~/pki/rootCA/certs/rootca.crt -cert ~/pki/subCA/certs/client2.crt -key ~/pki/subCA/private/client2.key -showcerts Enter pass phrase for tmp/testcert/client2.key: CONNECTED(00000003) depth=1 C = AU, ST = Some-State, O = Internet Widgits Pty Ltd, CN = rootca verify return:1 depth=0 C = AU, ST = Some-State, O = Internet Widgits Pty Ltd, CN = test.local verify return:1 ... Compression: 1 (zlib compression) Start Time: 1359989989 Timeout : 300 (sec) Verify return code: 0 (ok) --- GET / HTTP/1.0 HTTP/1.1 400 Bad Request Server: nginx/0.7.67 Date: Mon, 04 Feb 2013 15:00:43 GMT Content-Type: text/html Content-Length: 231 Connection: close <html> <head><title>400 The SSL certificate error</title></head> <body bgcolor="white"> <center><h1>400 Bad Request</h1></center> <center>The SSL certificate error</center> <hr><center>nginx/0.7.67</center> </body> </html> closed Verification fails with Client #2 certificate and subordinate CA certificate: # openssl s_client -connect test.local:443 -CAfile ~/pki/subCA/certs/subca.crt -cert ~/pki/subCA/certs/client2.crt -key ~/pki/subCA/private/client2.key -showcerts Enter pass phrase for tmp/testcert/client2.key: CONNECTED(00000003) depth=1 C = AU, ST = Some-State, O = Internet Widgits Pty Ltd, CN = rootca verify error:num=19:self signed certificate in certificate chain verify return:0 ... Compression: 1 (zlib compression) Start Time: 1359990354 Timeout : 300 (sec) Verify return code: 19 (self signed certificate in certificate chain) --- GET / HTTP/1.0 HTTP/1.1 400 Bad Request ... Still getting 400 Bad Request error with concatenated CA certificates and Client #2 (but still everything ok with Client #1): # cat certs/rootca.crt ../subCA/certs/subca.crt > certs/concatenatedca.crt # openssl s_client -connect test.local:443 -CAfile ~/pki/rootCA/certs/concatenatedca.crt -cert ~/pki/subCA/certs/client2.crt -key ~/pki/subCA/private/client2.key -showcerts Enter pass phrase for tmp/testcert/client2.key: CONNECTED(00000003) depth=1 C = AU, ST = Some-State, O = Internet Widgits Pty Ltd, CN = rootca verify return:1 depth=0 C = AU, ST = Some-State, O = Internet Widgits Pty Ltd, CN = test.local verify return:1 --- ... Compression: 1 (zlib compression) Start Time: 1359990772 Timeout : 300 (sec) Verify return code: 0 (ok) --- GET / HTTP/1.0 HTTP/1.1 400 Bad Request ... Update 2: I've managed to recompile nginx with enabled debug. Here is the part of successfull conection by Client #1 track: 2013/02/05 14:08:23 [debug] 38701#0: *119 accept: <MY IP ADDRESS> fd:3 2013/02/05 14:08:23 [debug] 38701#0: *119 event timer add: 3: 60000:2856497512 2013/02/05 14:08:23 [debug] 38701#0: *119 kevent set event: 3: ft:-1 fl:0025 2013/02/05 14:08:23 [debug] 38701#0: *119 malloc: 28805200:660 2013/02/05 14:08:23 [debug] 38701#0: *119 malloc: 28834400:1024 2013/02/05 14:08:23 [debug] 38701#0: *119 posix_memalign: 28860000:4096 @16 2013/02/05 14:08:23 [debug] 38701#0: *119 http check ssl handshake 2013/02/05 14:08:23 [debug] 38701#0: *119 https ssl handshake: 0x16 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL server name: "test.local" 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL_do_handshake: -1 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL_get_error: 2 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL handshake handler: 0 2013/02/05 14:08:23 [debug] 38701#0: *119 verify:1, error:0, depth:1, subject:"/C=AU /ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca",issuer: "/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca" 2013/02/05 14:08:23 [debug] 38701#0: *119 verify:1, error:0, depth:0, subject:"/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=Client #1",issuer: "/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca" 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL_do_handshake: 1 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL: TLSv1, cipher: "AES256-SHA SSLv3 Kx=RSA Au=RSA Enc=AES(256) Mac=SHA1" 2013/02/05 14:08:23 [debug] 38701#0: *119 http process request line 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL_read: -1 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL_get_error: 2 2013/02/05 14:08:23 [debug] 38701#0: *119 http process request line 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL_read: 1 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL_read: 524 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL_read: -1 2013/02/05 14:08:23 [debug] 38701#0: *119 SSL_get_error: 2 2013/02/05 14:08:23 [debug] 38701#0: *119 http request line: "GET / HTTP/1.1" And here is the part of unsuccessfull conection by Client #2 track: 2013/02/05 13:51:34 [debug] 38701#0: *112 accept: <MY_IP_ADDRESS> fd:3 2013/02/05 13:51:34 [debug] 38701#0: *112 event timer add: 3: 60000:2855488975 2013/02/05 13:51:34 [debug] 38701#0: *112 kevent set event: 3: ft:-1 fl:0025 2013/02/05 13:51:34 [debug] 38701#0: *112 malloc: 28805200:660 2013/02/05 13:51:34 [debug] 38701#0: *112 malloc: 28834400:1024 2013/02/05 13:51:34 [debug] 38701#0: *112 posix_memalign: 28860000:4096 @16 2013/02/05 13:51:34 [debug] 38701#0: *112 http check ssl handshake 2013/02/05 13:51:34 [debug] 38701#0: *112 https ssl handshake: 0x16 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL server name: "test.local" 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL_do_handshake: -1 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL_get_error: 2 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL handshake handler: 0 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL_do_handshake: -1 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL_get_error: 2 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL handshake handler: 0 2013/02/05 13:51:34 [debug] 38701#0: *112 verify:0, error:20, depth:1, subject:"/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=subca",issuer: "/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca" 2013/02/05 13:51:34 [debug] 38701#0: *112 verify:0, error:27, depth:1, subject:"/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=subca",issuer: "/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=rootca" 2013/02/05 13:51:34 [debug] 38701#0: *112 verify:1, error:27, depth:0, subject:"/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=Client #2",issuer: "/C=AU/ST=Some-State/O=Internet Widgits Pty Ltd/CN=subca" 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL_do_handshake: 1 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL: TLSv1, cipher: "AES256-SHA SSLv3 Kx=RSA Au=RSA Enc=AES(256) Mac=SHA1" 2013/02/05 13:51:34 [debug] 38701#0: *112 http process request line 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL_read: 1 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL_read: 524 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL_read: -1 2013/02/05 13:51:34 [debug] 38701#0: *112 SSL_get_error: 2 2013/02/05 13:51:34 [debug] 38701#0: *112 http request line: "GET / HTTP/1.1" So I'm getting OpenSSL error #20 and then #27. According to verify documentation: 20 X509_V_ERR_UNABLE_TO_GET_ISSUER_CERT_LOCALLY: unable to get local issuer certificate the issuer certificate could not be found: this occurs if the issuer certificate of an untrusted certificate cannot be found. 27 X509_V_ERR_CERT_UNTRUSTED: certificate not trusted the root CA is not marked as trusted for the specified purpose.

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  • Linq: Converting flat structure to hierarchical

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  • Hierarchical data in Linq - options and performance

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  • plotting results of hierarchical clustering ontop of a matrix of data in python

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  • hierarchical clustering with gene expression matrix in python

    - by user248237
    how can I do a hierarchical clustering (in this case for gene expression data) in Python in a way that shows the matrix of gene expression values along with the dendrogram? What I mean is like the example here: http://www.mathworks.cn/access/helpdesk/help/toolbox/bioinfo/ug/a1060813239b1.html shown after bullet point 6 (Figure 1), where the dendrogram is plotted to the left of the gene expression matrix, where the rows have been reordered to reflect the clustering. How can I do this in Python using numpy/scipy or other tools? Also, is it computationally practical to do this with a matrix of about 11,000 genes, using euclidean distance as a metric? thanks.

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  • hierarchical clustering on correlations in Python scipy/numpy?

    - by user248237
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    i've got a list of all countries - states - cities (- subcities/villages etc) in a XML file and to retrieve for example a state's all cities it's really quick with XML (using xml parser). i wonder, if i put all this information in mysql, is retrieving a state's all cities as fast as with XML? cause XML is designed to store hierarchical data while relational databases like mysql are not. the list contains like 500 000 entities. so i wonder if its as fast as XML using either of: Adjacency list model Nested Set model And which one should i use? Cause (theoretically) there could be unlimited levels under a state. And which is fastest for this huge dataset? Thanks!

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  • problem with hierarchical clustering in Python

    - by user248237
    I am doing a hierarchical clustering a 2 dimensional matrix by correlation distance metric (i.e. 1 - Pearson correlation). My code is the following (the data is in a variable called "data"): from hcluster import * Y = pdist(data, 'correlation') cluster_type = 'average' Z = linkage(Y, cluster_type) dendrogram(Z) The error I get is: ValueError: Linkage 'Z' contains negative distances. What causes this error? The matrix "data" that I use is simply: [[ 156.651968 2345.168618] [ 158.089968 2032.840106] [ 207.996413 2786.779081] [ 151.885804 2286.70533 ] [ 154.33665 1967.74431 ] [ 150.060182 1931.991169] [ 133.800787 1978.539644] [ 112.743217 1478.903191] [ 125.388905 1422.3247 ]] I don't see how pdist could ever produce negative numbers when taking 1 - pearson correlation. Any ideas on this? thank you.

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    I am currently looking at using either the Taxonomy or CCK module on my Drupal site as a means to create a hierarchical system. However, I'm a little confused on which one would best suit my needs, or if there is something else that would work better. Basically, there will be probably 70 or so "mini-sites" on the website I'm working on, each with a landing page and about 5 sub-pages of detailed information. I need a way to mark those sub-pages as being sub-pages of their parent page, as well as create a menu system to navigate between them. What is the best way this could be done? Thanks for your input!

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  • XSLT Transforming sequential XML to hierarchical XML

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