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  • Sudo yum seems to fail on CentOS, but works fine after sudo -i

    - by Aron Rotteveel
    I am currently having some trouble with yum through sudo. For some reason, it does not seem to work: aron@graviton [/var/log]# sudo yum clean all There was a problem importing one of the Python modules required to run yum. The error leading to this problem was: /usr/lib64/python2.4/lib-dynload/datetime.so: failed to map segment from shared object: Cannot allocate memory Please install a package which provides this module, or verify that the module is installed correctly. It's possible that the above module doesn't match the current version of Python, which is: 2.4.3 (#1, Sep 3 2009, 15:37:37) [GCC 4.1.2 20080704 (Red Hat 4.1.2-46)] If you cannot solve this problem yourself, please go to the yum faq at: http://wiki.linux.duke.edu/YumFaq The strange thing, however, is that it works fine when I gain root privileges through sudo -i first. Any ideas what might be causing this problem?

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  • XenServer 6.0.2 path to installation media contains non-ascii characters

    - by cmaduro
    XenServer 6.0.2 install fails no matter what I do. I have confirmed that the md5 checksum on my ISO file is good. I tried installing from a mounted ISO file (remotely via iKVM). I tried installing from physical media. I tried installing from a bootable USB stick (using syslinux + contents of the ISO) All attempts have yielded the same result: When verifying the installation media, at 0% initializing, the following is reported: "Some packages appeared to be damaged." followed by a list of pretty much all the gz2 and rpm packages. If I skip the media verification the installer proceeds and then gives me an error when it reaches "Installing from base pack" at 0% which states "An unrecoverable error has occurred. The error was: 'ascii' codec can't decode byte 0xff in position 20710: ordinal not in range(128) Please refer to your user guide, or contact a Technical Support Representative, for further details" there is one option left which is to reboot. Apparently at some point during the processing of the repositories on the installation media non-ascii characters are found, which causes the installer to quit. How do I fix this? Here are my specs TYAN S8236 motherboard 2 AMD Opteron 6234 processors LSI2008 card connected to 2 1TB Seagate Constellation drives SATA, 1 500GB Corsair m4 SSD SATA and 1 Corsair Forse 3 - 64GB SSD SATA Onboard SATA connected to a slim DVD-+RW. Onboard SAS connected to 2 IBM ESX 70GB 10K SAS drives (for XenServer) 256GB memory ================================================================================= Comments: According to pylonsbook.com "chances are you have run into a problem with character sets, encodings, and Unicode" – cmaduro 10 hours ago A clue is provided by "vmware.com/support/vsphere5/doc/…; Data migration fails if the path to the vCenter Server installation media contains non-ASCII characters When this problem occurs, an error message similar to: 'ascii' codec can't decode byte 0xd0 in position 30: ordinal not in range(128) appears, and the installer quits unexpectedly during the data migration process. – cmaduro 10 hours ago This is an error that python throws. And guess what, the .py extention of the file you have to edit in this link community.spiceworks.com/how_to/show/1168 means the installer is written in python. Python is interpreted, so now to find the install file responsible for this error. – cmaduro 6 hours ago The file that generates the error upon verification is /opt/xensource/installer/tui/repo.py. The error message appears around line 359. – cmaduro 2 hours ago I am fairly sure that the install error is generated somewhere in repository.py as the backend.py file throws errors while methods in that file are being called. Perhaps all errors can be traced back to this file. – cmaduro 1 hour ago

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  • SSH - using keys works, but not in a script

    - by Garfonzo
    I'm kind of confused, I have set up public keys between two servers and it works great, sort of. It only works if I ssh manually from a terminal. When I put the ssh command into a python script, it asks me for a password to login. The script is using rsync to sync up a directory from one server to the other. manual ssh command that works, no password prompt, automatic login: ssh -p 1234 [email protected] In the Python script: rsync --ignore-existing --delete --stats --progress -rp -e "ssh -p 1234" [email protected]:/directory/ /other/directory/ What gives? (obviously, ssh details are fake)

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  • Supervisord appears to be running, but monitored programs aren't launched

    - by Brad Montgomery
    I've got supervisord 3.0a8 installed from the system package on ubuntu 10.04 (64bit). The supervisor service appears to be running, but it's not launching the configured programs. Interestingly enough, this exact configuration is running on another system, and is working as expected. The main config file looks like this: ; /etc/supervisor/supervisord.conf [unix_http_server] chmod=0700 file=/var/run/supervisor.sock [supervisord] logfile=/var/log/supervisor/supervisord.log childlogdir=/var/log/supervisor pidfile=/var/run/supervisord.pid [rpcinterface:supervisor] supervisor.rpcinterface_factory = supervisor.rpcinterface:make_main_rpcinterface [supervisorctl] serverurl=unix:///var/run/supervisor.sock [include] files = /etc/supervisor/conf.d/*.conf A sample program config looks like this: ; /etc/supervisor/conf.d/sample.conf [program:sample] directory=/opt/sample command=/opt/sample/run.sh Where, the /opt/sample/run.sh is: #!/bin/bash while true; do T=`date` echo "[$T] Running!" >> /var/log/sample.log sleep 1 done And, here's some additional information regarding the running instance of supervisord: root@myhost:~# supervisorctl version 3.0a8 root@myhost:~# which supervisorctl /usr/bin/supervisorctl root@myhost:~# which supervisord /usr/bin/supervisord root@myhost:~# supervisorctl status # NOTE that there's no output! root@myhost:~# supervisorctl avail root@myhost:~# service supervisor status is running root@myhost:~# ps aux | grep supervisor root 21740 0.1 0.4 40772 10056 ? Ss 11:28 0:00 /usr/bin/python /usr/bin/supervisord root 21749 0.0 0.0 7624 932 pts/2 S+ 11:28 0:00 grep --color=auto supervisor root@myhost:~# cat /var/log/supervisor/supervisord.log 2012-04-26 11:28:22,483 CRIT Supervisor running as root (no user in config file) 2012-04-26 11:28:22,536 INFO RPC interface 'supervisor' initialized 2012-04-26 11:28:22,536 WARN cElementTree not installed, using slower XML parser for XML-RPC 2012-04-26 11:28:22,536 CRIT Server 'unix_http_server' running without any HTTP authentication checking 2012-04-26 11:28:22,539 INFO daemonizing the supervisord process 2012-04-26 11:28:22,539 INFO supervisord started with pid 21740 root@myhost:~# ll /etc/supervisor/conf.d/ total 28 drwxr-xr-x 2 root root 4096 2012-04-26 11:31 ./ drwxr-xr-x 3 root root 4096 2012-04-25 18:38 ../ -rw-r--r-- 1 root root 66 2012-04-26 11:31 sample.conf root@myhost:~# ll /opt/sample/ total 12 drwxr-xr-x 2 root root 4096 2012-04-26 11:32 ./ drwxr-xr-x 4 root root 4096 2012-04-26 11:31 ../ -rwxr-xr-x 1 root root 97 2012-04-26 11:32 run.sh* root@myhost:~# python Python 2.6.5 (r265:79063, Apr 16 2010, 13:57:41) [GCC 4.4.3] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> Any help is greatly appreciated!

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  • How can I make Amazon SES the default method of sending mail from my server?

    - by Jake
    I'd like to start using Amazon SES for all emails from our server. We have a few freelance designers with PHP hosting, some Django/Python web apps and also some system utilities which send emails. So I'd like to have PHP's mail function, the command line mail command and our python apps all be able to use it, preferably without having to set them all up in their own way. I think what I need is to have something like Postfix running on localhost and using SES for it's delivery but I don't know how to do that. Amazon's docs state I need to setup my mail transfer agent (MTA) so that it invokes the ses-send-email.pl script. I have the script but I'm not sure how to achieve this. Am I on the right track? If so, how can I configure Postfix to use that script?

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  • Apache mod_wsgi error: ImportError: No module named django.core.handlers.wsgi

    - by bigmac
    I am using Python 2.7 with mod_python 3.3.1 and mod_wsgi 3.3. I get an Internal Server Error and this stack trace in the apache logs: [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] import django.core.handlers.wsgi [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] ImportError: No module named django.core.handlers.wsgi [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] mod_wsgi (pid=4463): Target WSGI script '/home/one/codebase/campman/wsgi_handler.py' cannot be loaded as Python module. [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] mod_wsgi (pid=4463): Exception occurred processing WSGI script '/home/one/codebase/campman/wsgi_handler.py'. [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] Traceback (most recent call last): [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] File "/home/one/codebase/campman/wsgi_handler.py", line 13, in <module> [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] import django.core.handlers.wsgi [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] ImportError: No module named django.core.handlers.wsgi

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  • Accessing localhost on my iPhone

    - by mohabitar
    I've found similarly titled questions, but none that directly address my issue. I'm running Google App Engine server on my Macbook, and it was configured to use port 8080 on localhost. And so anytime I wanted to run my site, I'd just go to localhost:8080/saveuser and everything worked fine. Now, I want to access this same site on my iPhone. I can't just do localhost on my iPhone, so I set up Web Sharing on my mac, and it's set up to http://192.168.1.106/~mohabitar. I can access this from my iPhone, but it only displays a directory of my files, and doesn't actually run the Python script. The only way my Python scripts actually run is if I do localhost:8080 on my computer. What can I do about this?

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  • Need to find jni.h in cmake on Mac

    - by Ilan Tal
    I am trying to make VTK compile on a Mac Air machine. I am using CMake 2.8-9, using Xcode4 as the generator. If I press the Configure button with VTK_WRAP_JAVA not checked, it will go with no errors. However I definitely need to use the wrap java since my main program is in Java and I need to get to VTK which is c++. As soon as I check the wrap Java, I get Could NOT find JNI. It apparently is looking for jni.h which in Linux there is no problem finding, but in the Mac it apparently can't find it. I did a locate jni.h and got new-host-2:~ geraldkolodny$ locate jni.h /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk/System/Library/Frameworks/JavaVM.framework/Versions/A/Headers/jni.h /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.8.sdk/System/Library/Frameworks/JavaVM.framework/Versions/A/Headers/jni.h /Library/Java/JavaVirtualMachines/jdk1.7.0_07.jdk/Contents/Home/include/jni.h I tried to manually put into JAVA_INCLUDE_PATH2 either entry 2 or 3 (without the jni.h at the end), but it still can't find jni.h. Xcode used to have a template for jni but that is now gone in the latest version. I am fresh out of ideas on how to solve this problem. I'd be grateful for any suggestions. Thanks, Ilan

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  • -bash: ls: command not found at Terminal on MAC OS

    - by art.mania
    I need to start using GIT for my projects from now on and I need to use some UNIX commands. but no matter what I do, I always receive "command not found" error. I installed MacPorts, but still cant run any UNIX command :/ When I try ls, I get the error below, same for sudo, or any other command: -bash: ls: command not found and when I try $PATH, I get the lines below: hakan-yilmaz-MacBook-Pro:~ hakanyilmaz$ **$PATH** -bash: /opt/local/bin:/opt/local/sbin:/opt/local/bin:/opt/local/sbin:/opt/local/bin:/opt/local/sbin:/Library/Frameworks/Python.framework/Versions/2.6/bin:/Library/Frameworks/Python.framework/Versions/Current/bin:/opt/subversion/bin/:PATH: No such file or directory I'm on Mac OS X 10.6.6 I spent 2-3 days and kept googling and trying everything I found at forums, but no success. SOLUTION: I opened .bash_profile with TextWrangler and removed everything else than export PATH=/opt/local/bin:/opt/local/sbin:$PATH Then, I reboot that Mac, and WORKING!!!!

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  • Drobo FS vs Lime Technology unRAID vs FreeNAS

    - by elluca
    I already decided to by a drobo fs until I just found these two tests: http://www.digitalversus.com/data-robotics-drobo-fs-p889_9543_487.html http://www.digitalversus.com/lime-technology-unraid-p889_8992_473.html The two cons agains drobo for me: loudness price What disadvantages has the unraid stuff against the drobo fs? Has it also got that ease of use like swapping drives on the go, simply extend capacity by plugging in new drives, notify me of drive errors, disk failure protection, dynamic space of "partitions", better/worse effective capacity, etc. Which is more secure? Am I able to simply replace a bad drive with a new one on unraid? What happens if my pc fails? Lets say the cpu overheats. Since I have a complete pc which is going to be replaced, I only have to pay the software to use unraid. I am going to use my nas for: music library (how well does it integrate with iTunes? ) picture library movie library development (i need to be able to be to use time machine) I am going to use this nas with a MacBook pro. My current disks: 2x 500Gb 1x 1.5Tb 1x 2Tb On a drobo fs I would have 2.26 Tb of space. What would it be on unraid? Is FreeNAS also an alternative?

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  • Can you share offline files cache with two user accounts?

    - by Joel Coehoorn
    I have a new laptop that I use for both home and work. It runs windows 7 ultimate, and is joined to the domain at work. It is okay to use this laptop for both work and personal activities, and I even have an account set up on the local machine in addition to the work domain account specifically for this to help keep the two separate. At home, I have a file server that I use to share files and printers with my wife's laptop, this new laptop, and my old desktop which will now become the family machine. My mp3 library is on there, among other things. What I want to do is use the windows Offline Files feature to keep a synced copy of my music library on the laptop. That part is easy. What's tricky is that I want to share this offline cache between both the local account on the laptop and my work domain account. I could do them both separately, but then I have two copies of a very large music library stored locally. This also means twice the sync burden, when the domain account is rarely connected to the file share. I really want to be able to sync from the local machine account only, and have the domain account be able to use the synced files. I know where the offline file cache is kept (\Windows\CSC) and I can find the cached files (not encrypted), but permissions on the cache are setup weird, and so using that cache directly is not trivial. Any ideas appreciated.

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  • Apache mod_wsgi error: ImportError: No module named django.core.handlers.wsgi

    - by bigmac
    I am using Python 2.7 with mod_python 3.3.1 and mod_wsgi 3.3. I get an Internal Server Error and this stack trace in the apache logs: [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] import django.core.handlers.wsgi [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] ImportError: No module named django.core.handlers.wsgi [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] mod_wsgi (pid=4463): Target WSGI script '/home/one/codebase/campman/wsgi_handler.py' cannot be loaded as Python module. [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] mod_wsgi (pid=4463): Exception occurred processing WSGI script '/home/one/codebase/campman/wsgi_handler.py'. [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] Traceback (most recent call last): [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] File "/home/one/codebase/campman/wsgi_handler.py", line 13, in <module> [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] import django.core.handlers.wsgi [Thu Apr 21 10:25:37 2011] [error] [client 83.244.243.242] ImportError: No module named django.core.handlers.wsgi

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  • Mac: window manager frozen, have ssh access

    - by Bernd
    I have a Mac which regularly runs into a problem. The user interface stops reponding, showing a "frozen" user interface. The mouse is still moving but clicking does not trigger anything. This happens about once a week. Solution so far is to force switch-off the Mac and reboot it. I have ssh root access to the Mac. Killing (kill -9) the active application has no visible impact on what is shown on the screen. Any ideas on how to diagnose this? Is there a way to restart the window manager from the ssh shell? Killing /System/Library/Frameworks/ApplicationServices.framework/Frameworks/CoreGraphics.framework/Resources/WindowServer seems not to be possible. The Mac is an early 2008 iMac and runs Lion with latest updates. /Library/Logs/DiagnosticReports is empty. Update: Problem stays after update to Mountain Lion. The WindowServer process is in "uninterruptible wait" state ("U" flag in ps output set): imac:~ root# ps ax|awk "NR==1|| /WindowServer/"|grep -v awk PID TT STAT TIME COMMAND 86 ?? Us 50:51.69 /System/Library/Frameworks/ApplicationServices.framework/Frameworks/CoreGraphics.framework/Resources/WindowServer -daemon Any idea for diagnosing what blocks the process? Any idea for "waking up" the process?

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  • How to backup iTunes on Windows to folder/share, i.e. without "Back Up to Disc"? No DVD writer avail

    - by Chris W. Rea
    (Surprised I didn't already find an answer here to this!) I've got a computer on which I'd like to back up the iTunes library – music, movies, apps, everything. We're talking multiple gigabytes. Unfortunately, it seems that iTunes' own built-in "Back Up to Disc" feature (the only backup feature I can find in iTunes) only functions with a CD or DVD writer/burner. The computer in question does not have a DVD burner. While it has a CD burner, attempting to back up to CDs would require dozens of discs plus more time than I'm willing to spend swapping them. So: What is the recommended way to back up an entire iTunes library on a Windows computer, to a non-CD/DVD location such as an external hard drive or a network shared folder? Then, once such a backup has been performed, what is the process for restoring the library – e.g. after the computer has been repaved with a new version of Windows – so that iTunes is resurrected whole and recognizes devices it syncs with? Thank you!

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  • CentOS 6.5 as WebServer for Django Dev

    - by Charlesliam
    During CentOS 6.5 Installation I choose WebServer type for this computer. The server has a static IP address 192.168.111.100. The CentOS was updated I managed to install virtualenv with Python 2.7. Within the virtualenv, I'll be using Django Framework. After I tried to run the command using root user python manage.py runserver 0.0.0.0:8000 I can't see the website from other computer within the LAN when I try to type 192.168.111.100:8000/admin on my browser. I already disable firewall using service iptables stop I can ping the 192.168.111.100 and I have a good feedback with nslookup. What seems the problem of my config?

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  • User directive in nginx generates error despite running as UID root

    - by Joost Schuur
    I'm running nginx on a MacOS X machine, installed with brew, and when I launch nginx, even with sudo, I get the following warning in my log file over and over again: 4/21/11 2:03:42 AM org.nginx[3788] nginx: [warn] the "user" directive makes sense only if the master process runs with super-user privileges, ignored in /usr/local/etc/nginx/conf/nginx.conf:2 From nginx.conf: user jschuur staff; I'm already launching nginx with sudo, since I want the thing to listen on port 80. Shouldn't that be enough to give it the proper super user privileges? The nginx binary as it's installed: jschuur@Glenna:sbin ? master ls -la total 4544 drwxr-xr-x 3 jschuur staff 102 Apr 12 20:53 . drwxrwxr-x 15 jschuur staff 510 Apr 12 15:25 .. -rwxr-xr-x 1 jschuur staff 2325648 Apr 12 20:39 nginx FWIW, I recompiled the binary to set passenger up and moved it around from it's original location into /usr/local/sbin. Update: As it turns out MacOS X was restarting nginx after I'd stopped it, because the launchd plist in ~/Library/LaunchAgents had set it to 'KeepAlive'. However, because I installed this plist into my local user's LaunchAgents folder as opposed to /Library/LaunchAgents (or better yet /Library/LaunchDaemons, which run before you even log on), it wasn't executed as root. Because of an error about not having permissions to use port 80, it actually exited right away, but still wrote to the same log file as the nginx process I started with sudo. I had thought the errors stemming from the automatic restart were actually coming from my manual restart via sudo. So, bottom line, problem solved. The real problem here was the homebrew instructions specifically asking you to install the plist file into an area that wouldn't allow a local site to use port 80.

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  • Can't make nodejs mingw32: pkg-config can't find gnutils

    - by valya
    I'm trying to compile nodejs using MSYS, mingw32 on Windows 7-64 Valentin Golev@VALYASNOTEBOOK /home/Valentin_Golev/nodejs $ ./configure Checking for program CL : ok C:\Program Files (x86)\Microsoft V isual Studio 10.0\VC\BIN\x86_amd64\CL.exe Checking for program CL : ok C:\Program Files (x86)\Microsoft V isual Studio 10.0\VC\BIN\CL.exe Checking for program CL : ok C:\Program Files (x86)\Microsoft V isual Studio 10.0\VC\BIN\amd64\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\x86_amd64\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\amd64\CL.exe Checking for program CL : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\amd64\CL.exe Checking for program LINK : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\amd64\LINK.exe Checking for program LIB : ok c:\Program Files (x86)\Microsoft V isual Studio 9.0\VC\BIN\amd64\LIB.exe Checking for program MT : ok C:\Program Files\\Microsoft SDKs\W indows\v6.0A\bin\x64\MT.exe Checking for program RC : ok C:\Program Files\\Microsoft SDKs\W indows\v6.0A\bin\x64\RC.exe Checking for msvc : ok Checking for msvc : ok Checking for library dl : not found Checking for library execinfo : not found Checking for gnutls >= 2.5.0 : fail --- libeio --- Checking for library pthread : not found Checking for function pthread_create : not found error: the configuration failed (see 'C:\\msys\\1.0\\home\\Valentin_Golev\\node js\\build\\config.log') I have gnutils built and installed! I've checked the config.log, and there was a command: pkg-config --errors-to-stdout --print-errors --atleast-version=2.5.0 gnutls I typed it in the console Valentin Golev@VALYASNOTEBOOK /home/Valentin_Golev/nodejs $ pkg-config --errors-to-stdout --print-errors --atleast-version=2.5.0 gnutls Package gnutls was not found in the pkg-config search path. Perhaps you should add the directory containing `gnutls.pc' to the PKG_CONFIG_PATH environment variable No package 'gnutls' found But, Valentin Golev@VALYASNOTEBOOK ~ $ $PKG_CONFIG_PATH sh: c:/msys/1.0/local/lib/pkgconfig: is a directory Valentin Golev@VALYASNOTEBOOK ~ $ cd $PKG_CONFIG_PATH Valentin Golev@VALYASNOTEBOOK /local/lib/pkgconfig $ ls gnutls-extra.pc gnutls.pc What am I doing wrong?

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  • Error when starting .Net-Application from ThinApp-Application

    - by user50209
    one of our customers uses SAP through VMWare ThinApp. In SAP there is a button that launches an .Net application from a server. When starting the .Net-application directly, there is no error. If the user tries to start the application by clicking the button in the ThinApp-Application, it displays the following errors: Microsoft Visual C++ Runtime Library R6034 An application has made an attempt to load the C runtime library incorrectly. Please contact the application's support team for more information. After clicking "OK" it displays: Microsoft Visual C++ Runtime Library Runtime Error! R6030 - CRT not initialized So, does the customer have to install some components into his ThinApp (if yes, which?) to get things working? Regards, inno ----- [EDIT] ----- @Sean: It's installed the following way: The .exe of the .Net-Application is on a mapped drive on a server. All clients have the requirements installed (.Net-framework for example) and start the .exe from the mapped drive. The ThinApp-Application tries to start this application and throws the mentioned exceptions. AFAIK there are no entry points for this application configured. What I should also mention is: The .Net-Application crashes during execution. That means, we have a debug mode implemented that shows what the application is doing. The application shows what it's doing and after some steps it crashes. The interesting point is: It's a .Net-application, not a C++ Application.

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  • calculate AUC (GAM) in R [migrated]

    - by ahmad
    I used the following script to calculate AUC in R: library(mgcv) library(ROCR) library(AUC) data1=read.table("d:\\2005.txt", header=T) GAM<-gam(tuna ~ s(chla)+s(sst)+s(ssha),family=binomial, data=data1) gampred<- predict(GAM, type="response") rp <- prediction(gampred, data1$tuna) auc <- performance( rp, "auc")@y.values[[1]] auc roc <- performance( rp, "tpr", "fpr") plot( roc ) But when I was running the script, the result is: **rp <- prediction(gampred, data1$tuna) Error in prediction(gampred, data1$tuna) : Format of predictions is invalid. > > auc <- performance( rp, "auc")@y.values[[1]] Error in performance(rp, "auc") : object 'rp' not found > auc function (x, min = 0, max = 1) { if (any(class(x) == "roc")) { if (min != 0 || max != 1) { x$fpr <- x$fpr[x$cutoffs >= min & x$cutoffs <= max] x$tpr <- x$tpr[x$cutoffs >= min & x$cutoffs <= max] } ans <- 0 for (i in 2:length(x$fpr)) { ans <- ans + 0.5 * abs(x$fpr[i] - x$fpr[i - 1]) * (x$tpr[i] + x$tpr[i - 1]) } } else if (any(class(x) %in% c("accuracy", "sensitivity", "specificity"))) { if (min != 0 || max != 1) { x$cutoffs <- x$cutoffs[x$cutoffs >= min & x$cutoffs <= max] x$measure <- x$measure[x$cutoffs >= min & x$cutoffs <= max] } ans <- 0 for (i in 2:(length(x$cutoffs))) { ans <- ans + 0.5 * abs(x$cutoffs[i - 1] - x$cutoffs[i]) * (x$measure[i] + x$measure[i - 1]) } } return(as.numeric(ans)) } <bytecode: 0x03012f10> <environment: namespace:AUC> > > roc <- performance( rp, "tpr", "fpr") Error in performance(rp, "tpr", "fpr") : object 'rp' not found > plot( roc ) Error in levels(labels) : argument "labels" is missing, with no default** Can anybody help me to solve this problem? Thank you in advance.

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  • Windows Media Center doesn't see my movies

    - by DrJekyll
    I am trying to configure my Windows Media Center (Windows 7 Ultimate). I selected folder with my movies and added it to the library, but when I went to the movies library, it says "There are no items in this library yet - Windows Media Center is searching for media files in the background...". I have all necessary codecs installed, Windows Media Player opens those movies correctly. When I right click on the file - Open with - Windows Media Center it also plays them without any problem. Any ideas why they don't appear in the libraries? Edit: Movies are coded with divx and xvid codecs and they have ".avi" extension. Windows doesn't have problems playing them. I told Media Center where the files are. I even pointed Windows Media Center to a folder with only one .avi file it still couldn't find anything there. (I have given it quiet some time, even though searching in the directory with only one file shouldn't take more than a few seconds.) When I add a folder with a lot of movies, I get a dialog box "You can wait while media is added or select OK to continue using Windows Media Center.".                                                                        At the end it says it added about 90 movies, but when I go to the libraries, it's still empty.

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  • Sudo yum seems to fail on CentOS, but works fine after sudo -i

    - by Aron Rotteveel
    I am currently having some trouble with yum through sudo. For some reason, it does not seem to work: aron@graviton [/var/log]# sudo yum clean all There was a problem importing one of the Python modules required to run yum. The error leading to this problem was: /usr/lib64/python2.4/lib-dynload/datetime.so: failed to map segment from shared object: Cannot allocate memory Please install a package which provides this module, or verify that the module is installed correctly. It's possible that the above module doesn't match the current version of Python, which is: 2.4.3 (#1, Sep 3 2009, 15:37:37) [GCC 4.1.2 20080704 (Red Hat 4.1.2-46)] If you cannot solve this problem yourself, please go to the yum faq at: http://wiki.linux.duke.edu/YumFaq The strange thing, however, is that it works fine when I gain root privileges through sudo -i first. Any ideas what might be causing this problem?

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  • Mac updated just now, postgres now broken

    - by Dave
    I run postgres 9.1 / ruby 1.9.2 / rails 3.1.0 on a maxbook air for local dev. It's all been running smoothly for months, (though this is the first time I've done development on a mac.) It's a macbook air from last year, and today I got the mac osx software update message as I have a few times before, and my system downloaded approx 450mb of updates and restarted. It now says it's on OSX 10.7.3. Point is, postgres has stopped working, when I start my thin server (mirror heroku cedar) as normal, and then browse to my rails app I get: PG::Error could not connect to server: Permission denied Is the server running locally and accepting connections on Unix domain socket "/var/pgsql_socket/.s.PGSQL.5432"? What happened? After browsing around a few questions I'm still confused, but here's some extra info: Running psql from command line gives same error I can run pgadmin 3 and connect via it and run SQL no problems Running which psql shows the version as /usr/bin/psql I created a PostgreSQL user back when I got the mac (it's always been on lion) I've no idea why, almost certainly I was following a tutorial which I neglected to store in my notes. Point is I am aware there is a _postgres user as well. I know it's rubbish, but apart from a note on passwords, I don't have any extra info on how I configured postgres - though the obvious implication is that I did not use the _postgres user. Anyone have suggestions or information on what might have changed / what I can try to debug and fix? Thanks. Edit: Playing around based on this question and answer: http://stackoverflow.com/questions/7975414/check-status-of-postgresql-server-mac-os-x, see this string of commands: $ sudo su postgreSQL bash-3.2$ /Library/PostgreSQL/9.1/bin/pg_ctl start -D /Library/PostgreSQL/9.1/data pg_ctl: another server might be running; trying to start server anyway server starting bash-3.2$ 2012-04-08 19:03:39 GMT FATAL: lock file "postmaster.pid" already exists 2012-04-08 19:03:39 GMT HINT: Is another postmaster (PID 68) running in data directory "/Library/PostgreSQL/9.1/data"? bash-3.2$ exit

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  • What is the best OS for a server hosting a simple Ruby on Rails based pastebin

    - by Koning Baard XIV
    I have created a simple pastebin in Ruby on Rails and Python. I want to host it in an intranet and it will have like about 1000 users. I want to use one Apache server with a cluster of Mongrel servers. The server itself is a 2 GHz Intel Centrino with 2 GB RAM. What do you think is the best OS to host this? I thought about Damn Small Linux or a custom LFS system. Ubuntu servers come with loads of stuff I don't need. Maybe there are some better OSes? It must be capable of: Running Apache Running Ruby Running Python Running Mongrel with Ruby on Rails SSH Can anyone reccomend me one? Thanks. PS: I am not going to run Windows Server or Mac OS X Server (Mac's are expensive).

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  • SQL Server Reporting Services - website blank, builder works

    - by Keith
    We have a few reports in SQL Server Reporting Services. For some reason when we run the report from the website, it doesn't return any data. When I run the same report from the Report Builder, it returns data. I looked in the logs and the only errors I could find is: ReportingServicesService!library!8!6/15/2012-08:12:33:: i INFO: Current DB Version Unknown, Instance Version C.0.8.54. ReportingServicesService!library!8!6/15/2012-08:12:33:: e ERROR: Throwing Microsoft.ReportingServices.Diagnostics.Utilities.InvalidReportServerDatabaseException: The version of the report server database is either in a format that is not valid, or it cannot be read. The found version is 'Unknown'. The expected version is 'C.0.8.54'. To continue, update the version of the report server database and verify access rights., ;Info: Microsoft.ReportingServices.Diagnostics.Utilities.InvalidReportServerDatabaseException: The version of the report server database is either in a format that is not valid, or it cannot be read. The found version is 'Unknown'. The expected version is 'C.0.8.54'. To continue, update the version of the report server database and verify access rights. ReportingServicesService!library!8!6/15/2012-08:12:33:: e ERROR: Exception caught while starting service. Error: Microsoft.ReportingServices.Diagnostics.Utilities.InvalidReportServerDatabaseException: The version of the report server database is either in a format that is not valid, or it cannot be read. The found version is 'Unknown'. The expected version is 'C.0.8.54'. To continue, update the version of the report server database and verify access rights. I'm not really sure why it would be a different version. It's all SQL Server 2008 R2 and I haven't made any changes to it since it's been running.

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  • Mercurial mirror: abort: No such file or directory: http://[...]/00manifest.i

    - by Sridhar Ratnakumar
    I am trying to setup a daily mirror of a mercurial repository - code.python.org in particular - within our local network, and serve that via Apache HTTPD. On the remote host that hosts apache, I did this: $ cd /var/www $ hg clone http://code.python.org/hg/trunk/ On my macbook, I ran: $ hg -v clone http://remote/trunk/ (falling back to static-http) abort: No such file or directory: http://remote/trunk/.hg/store/00manifest.i Google does not show any relevant result for this particular error. I remember back in those days being able to setup Bazaar mirrors by a simple clone. Doesn't Mercurial work like that? How do I setup a mirror that must further act like a clone URL?

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