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• How to cache YUI DataSource?

  - by Matt McCormick

  I'm setting up a YUI DataTable with filtering by following the steps on the YUI site However, I am using JSON as the DataSource ResponseType. When I type in a value to filter, the request will be sent to the server again. I find this to be wasteful as all the data has already been retrieved the first time. Is there a way to cache the initial data returned and then filter only according to that data so another AJAX request does not have to be made?

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• Initialization vector - DES/triple-des algorithm

  - by user312373

  Hi, In order to generate the encrypted data we would need to define a Key that should suffice generating the data. But in .net DESCryptoServiceProvider requires Key and Intialisation Vector to generate the encrypted data. In this regard, I would like to know the importance & the benefit gained by defining this initialisation vector field. Is this mandatory while encryption using DES algorithm. Pls share your thoughts on the same. Regards, Balu

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• Why is the latency on one LVM volume consistently higher?

  - by David Schmitt

  I've got a server with LVM over RAID1. One of the volumes has a consistently higher IO latency (as measured by the diskstats_latency munin plugin) than the other volumes from the same group. As you can see, the dark orange /root volume has consistently high IO latency. Actually ten times the average latency of the physical devices. It also has the highest Min and Max values. My main concern are not the peaks, which occur under high load, but the constant load on (semi-)idle. The server is running Debian Squeeze with the VServer kernel and has four VServer containers and one KVM guest. I'm looking for ways to fix - or at least understand - this situation. Here're some parts of the system configuration: root@kvmhost2:~# df -h Filesystem Size Used Avail Use% Mounted on /dev/mapper/system--host-root 19G 3.8G 14G 22% / tmpfs 16G 0 16G 0% /lib/init/rw udev 16G 224K 16G 1% /dev tmpfs 16G 0 16G 0% /dev/shm /dev/md0 942M 37M 858M 5% /boot /dev/mapper/system--host-isos 28G 19G 8.1G 70% /srv/isos /dev/mapper/system--host-vs_a 30G 23G 6.0G 79% /var/lib/vservers/a /dev/mapper/system--host-vs_b 5.0G 594M 4.1G 13% /var/lib/vservers/b /dev/mapper/system--host-vs_c 5.0G 555M 4.2G 12% /var/lib/vservers/c /dev/loop0 4.4G 4.4G 0 100% /media/debian-6.0.0-amd64-DVD-1 /dev/loop1 4.4G 4.4G 0 100% /media/debian-6.0.0-i386-DVD-1 /dev/mapper/system--host-vs_d 74G 55G 16G 78% /var/lib/vservers/d root@kvmhost2:~# cat /proc/mounts rootfs / rootfs rw 0 0 none /sys sysfs rw,nosuid,nodev,noexec,relatime 0 0 none /proc proc rw,nosuid,nodev,noexec,relatime 0 0 none /dev devtmpfs rw,relatime,size=16500836k,nr_inodes=4125209,mode=755 0 0 none /dev/pts devpts rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000 0 0 /dev/mapper/system--host-root / ext3 rw,relatime,errors=remount-ro,data=ordered 0 0 tmpfs /lib/init/rw tmpfs rw,nosuid,relatime,mode=755 0 0 tmpfs /dev/shm tmpfs rw,nosuid,nodev,relatime 0 0 fusectl /sys/fs/fuse/connections fusectl rw,relatime 0 0 /dev/md0 /boot ext3 rw,sync,relatime,errors=continue,data=ordered 0 0 /dev/mapper/system--host-isos /srv/isos ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/mapper/system--host-vs_a /var/lib/vservers/a ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/mapper/system--host-vs_b /var/lib/vservers/b ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/mapper/system--host-vs_c /var/lib/vservers/c ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/loop0 /media/debian-6.0.0-amd64-DVD-1 iso9660 ro,relatime 0 0 /dev/loop1 /media/debian-6.0.0-i386-DVD-1 iso9660 ro,relatime 0 0 /dev/mapper/system--host-vs_d /var/lib/vservers/d ext3 rw,relatime,errors=continue,data=ordered 0 0 root@kvmhost2:~# cat /proc/mdstat Personalities : [raid1] md1 : active raid1 sda2[0] sdb2[1] 975779968 blocks [2/2] [UU] md0 : active raid1 sda1[0] sdb1[1] 979840 blocks [2/2] [UU] unused devices: <none> root@kvmhost2:~# iostat -x Linux 2.6.32-5-vserver-amd64 (kvmhost2) 06/28/2012 _x86_64_ (8 CPU) avg-cpu: %user %nice %system %iowait %steal %idle 3.09 0.14 2.92 1.51 0.00 92.35 Device: rrqm/s wrqm/s r/s w/s rsec/s wsec/s avgrq-sz avgqu-sz await svctm %util sda 23.25 161.12 7.46 37.90 855.27 1596.62 54.05 0.13 2.80 1.76 8.00 sdb 22.82 161.36 7.36 37.66 850.29 1596.62 54.35 0.54 12.01 1.80 8.09 md0 0.00 0.00 0.00 0.00 0.14 0.02 38.44 0.00 0.00 0.00 0.00 md1 0.00 0.00 53.55 198.16 768.01 1585.25 9.35 0.00 0.00 0.00 0.00 dm-0 0.00 0.00 0.48 20.21 16.70 161.71 8.62 0.26 12.72 0.77 1.60 dm-1 0.00 0.00 3.62 10.03 28.94 80.21 8.00 0.19 13.68 1.59 2.17 dm-2 0.00 0.00 0.00 0.00 0.00 0.00 9.17 0.00 9.64 6.42 0.00 dm-3 0.00 0.00 6.73 0.41 53.87 3.28 8.00 0.02 3.44 0.12 0.09 dm-4 0.00 0.00 17.45 18.18 139.57 145.47 8.00 0.42 11.81 0.76 2.69 dm-5 0.00 0.00 2.50 46.38 120.50 371.07 10.06 0.69 14.20 0.46 2.26 dm-6 0.00 0.00 0.02 0.10 0.67 0.81 12.53 0.01 75.53 18.58 0.22 dm-7 0.00 0.00 0.00 0.00 0.00 0.00 7.99 0.00 11.24 9.45 0.00 dm-8 0.00 0.00 22.69 102.76 407.25 822.09 9.80 0.97 7.71 0.39 4.95 dm-9 0.00 0.00 0.06 0.08 0.50 0.62 8.00 0.07 481.23 11.72 0.16 root@kvmhost2:~# ls -l /dev/mapper/ total 0 crw------- 1 root root 10, 59 May 11 11:19 control lrwxrwxrwx 1 root root 7 Jun 5 15:08 system--host-kvm1 -> ../dm-4 lrwxrwxrwx 1 root root 7 Jun 5 15:08 system--host-kvm2 -> ../dm-3 lrwxrwxrwx 1 root root 7 Jun 5 15:06 system--host-isos -> ../dm-2 lrwxrwxrwx 1 root root 7 May 11 11:19 system--host-root -> ../dm-0 lrwxrwxrwx 1 root root 7 Jun 5 15:06 system--host-swap -> ../dm-9 lrwxrwxrwx 1 root root 7 Jun 5 15:06 system--host-vs_d -> ../dm-8 lrwxrwxrwx 1 root root 7 Jun 5 15:06 system--host-vs_b -> ../dm-6 lrwxrwxrwx 1 root root 7 Jun 5 15:06 system--host-vs_c -> ../dm-7 lrwxrwxrwx 1 root root 7 Jun 5 15:06 system--host-vs_a -> ../dm-5 lrwxrwxrwx 1 root root 7 Jun 5 15:08 system--host-kvm3 -> ../dm-1 root@kvmhost2:~#

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• Git pack file entry format

  - by Ben Collins

  My understanding of the Git pack file format is something like: Where the table is 32-bits wide, and the first three 32-bit words are the pack file header. The last row of 32 bits are the first 4 bytes of an entry. As I understand it, the size of the entry is specified by consecutive bytes with the MSB set, followed by compressed data. In the first byte whose MSB is not set, is the MSB part of the compressed data, or is it a gap? If it's part of the compressed data, how can you guarantee that when the data is compressed that bit won't be set?

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• Cocoa Touch - Display an Activity Indicator while loading a UITabBar View

  - by Aurum Aquila

  I have a UITabBar Application with two views that load large amounts of data from the web in their "viewWillAppear" methods. I want to show a progress bar or an activity indicator while this data is being retrieved, to make sure the user knows the app isn't frozen. I am aware that this has been asked before. I simply need some clarification on what seems to be a rather good solution. I have implimented the code in the example. The question's original asker later solved their problem, by putting the retrieval of data into another "thread". I understand the concept of threads, but I do not know how I would impliment this. With research, I have found that I need to move all of my heavy data retrieval into a background thread, as all of the UI updating occurs in the main thread. If one would be so kind as to provide an example for me, I would be very appreciative. I can provide parts of my existing code as necessary.

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• how to validate usename and password from a text file form in C#

  - by Ani

  I have a login form that has Username and password as inputs from user and I want to validate these login credentials from a text file. How can I do it? I know how to write data and read data..but how to read only specific data.or check whether username password combination exists or not. Thanks a lot. Ani

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• Views performance in MySQL

  - by Gianluca Bargelli

  I am currently writing my truly first PHP Application and i would like to know how to project/design/implement MySQL Views properly; In my particular case User data is spread across several tables (as a consequence of Database Normalization) and i was thinking to use a View to group data into one large table: CREATE VIEW `Users_Merged` ( name, surname, email, phone, role ) AS ( SELECT name, surname, email, phone, 'Customer' FROM `Customer` ) UNION ( SELECT name, surname, email, tel, 'Admin' FROM `Administrator` ) UNION ( SELECT name, surname, email, tel, 'Manager' FROM `manager` ); This way i can use the View's data from the PHP app easily but i don't really know how much this can affect performance. For example: SELECT * from `Users_Merged` WHERE role = 'Admin'; Is the right way to filter view's data or should i filter BEFORE creating the view itself? (I need this to have a list of users and the functionality to filter them by role).

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• Multiplying field value with retreived value jQuery

  - by Efe

  I pull product price from another page. Then I multiply it with quantity entered in the quantity input field. The problem is, if I forget to enter quantity value before I pull product price data or if I change the quantity field later, the final total price is not updated. I hope I clearly explained it. javascript: $('#AddProduct').click(function() { var i = 0; var adding = $(+(i++)+'<div class="row'+(i)+'"><div class="column width50"><input type="text" id="PRODUCTNAME" name="PRODUCTNAME'+(i)+'" value="" class="width98" /><input type="hidden" class="PRODUCTID" name="PRODUCTID" /><input type="hidden" class="UNITPRICE" name="UNITPRICE'+(i)+'" /><small>Search Products</small></div><div class="column width20"><input type="text" class="UNITQUANTITY" name="UNITQUANTITY'+(i)+'" value="" class="width98" /><small>Quantity</small></div><div class="column width30"><span class="prices">Unit Price:<span class="UNITPRICE"></span><br />Total Price:<span class="TOTALPRICE"></span><br /><a href="#" id="RemoveProduct(".row'+(i)+'");">Remove</a></span></div>'); $('#OrderProducts').append(adding); adding.find("#PRODUCTNAME").autocomplete("orders.cs.asp?Process=ListProducts", { selectFirst: false }).result(function(event, data, formatted) { if (data) { adding.find(".UNITPRICE").html(data[1]); adding.find(".PRODUCTID").val(data[2]); adding.find(".TOTALPRICE").html(data[1] * $('.UNITQUANTITY').val()); } }); return false; }); $('#RemoveProduct').click(function() { $().remove(); return false; }); my html: <fieldset> <h2>Order Items</h2> <div id="OrderProducts"> <a href="#" id="AddProduct"><img src="icons/add.png" alt="Add" /></a> </div> </fieldset> edit Now I totaly messed it up. Removing a row is not working anymore as well... Test link: http://refinethetaste.com/html/cp/?Section=orders&Process=AddOrder#

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• Communicate between content script and options page

  - by Gaurang Tandon

  I have seen many questions already and all are about background page to content script. Summary My extension has an options page, and a content script. The content script handles the storage functionality (chrome.storage manipulation). Whenever, a user changes a setting in the options page, I want to send a message to the content script to store the new data. My code: options.js var data = "abcd"; // let data chrome.tabs.query({ active: true, currentWindow: true }, function (tabs) { chrome.tabs.sendMessage(tabs[0].id, "storeData:" + data, function(response){ console.log(response); // gives undefined :( }); }); content script js chrome.runtime.onMessage.addListener(function(request, sender, sendResponse) { // not working }); My question: Why isn't the approach not working? Is there any other (better) approach for this procedure.

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• The confusion on python encoding

  - by zhangzhong

  I retrieved the data encoded in big5 from database,and I want to send the data as email of html content, the code is like this: html += """<tr><td>""" html += """unicode(rs[0], 'big5')""" # rs[0] is data encoded in big5 I run the script, but the error raised: UnicodeDecodeError: 'ascii' codec can't decode byte...... However, I tried the code in interactive python command line, there are no errors raised, could you give me the clue?

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• Recommendations for a google finance-like interactive chart control

  - by Chris Farmer

  I need some sort of interactive chart control for my .NET-based web app. I have some wide XY charts, and the user should be able to interactively scroll and zoom into a specific window on the x axis. Something that acts similar to the google finance control would be nice, but without the need for the date labels or the news event annotations. Also, I'd prefer to avoid Flash, if that's even possible. Can someone please give some recommendations of something that might come close? EDIT: the "real" google timeline visualization is for date-based data. I just have numeric data. I tried to use that control for non-date data, but it seems to always want to show a date and demands that the first data column actually be a date.

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• Cakephp - Banner Problem

  - by Joe Elliott

  Hi guys I have a banner rotator on my main page and it was working but it has stopped. All I have done before it stopped was modified some of the db fields. I added to fields position and company and deleted the field 'description.' It was a friend of a friend that made this part of the site for me while i was on holiday so i dont know which files i should show you cos dont know exactly what hes done but im guessing the following ones are the ones you need. banner_view <div id="banner"> <?php if(!empty($banners) && ($banners['Banner']['position']=='Top')){ foreach($banners as $banner){ ?> <a href="<?php echo $banner['Banner']['url']; ?>"><img src="<?php echo $banner['Banner']['path']; ?>" alt="<?php echo $banner['Banner']['company']; ?>" /></a> <?php } } ?> </div> banner_controller <?php class BannersController extends AppController { var $name = 'Banners'; var $helpers = array('Html', 'Form', 'Ajax','Javascript'); var $layout = 'ajax'; var $components = array('Session', 'Cookie'); function beforeFilter() { parent::beforeFilter(); $this->Auth->allow('index','featrot'); if(strpos($this->here, 'admin')) { $this->layout = 'admin'; } } function index() { Configure::write('debug',0); $this->Banner->recursive = 0; $this->paginate['Banner']; $banners = $this->paginate(); if($banners) { $this->set('banners', $banners); } } function featrot() { Configure::write('debug',0); $this->Banner->recursive = 0; $this->paginate['Banner']; $banners = $this->paginate(); if($banners) { $this->set('banners', $banners); } } function admin_edit(){ $this->pageTitle='Admin section - .: Banners Edit:.'; $banners = $this->Banner->find('first'); $id = $banners['Banner']['id']; if (!empty($this->data)) { $this->Banner->id = $id; if ($this->Banner->save($this->data)) { $this->Session->setFlash(__('The Banner has been updated', true)); } else { $this->Session->setFlash(__('The Banner could not update. Please, try again.', true)); } } if (empty($this->data)) { $this->data = $this->Banner->read(null, $id); } } function admin_display_banners($id=null){ $this->pageTitle='Admin section - .: Banners Setting :.'; if (!empty($this->data)) { $this->Banner->id = $id; if ($this->Banner->save($this->data)) { $this->Session->setFlash(__("Banner#$id has been updated", true)); $this->Banner->id = null; } else { $this->Session->setFlash(__("Banner#$id could not update. Please, try again.", true)); } } $this->data = null; $this->Banner->recursive = -1; $this->paginate['Banner']; $banners = $this->paginate('Banner'); $this->set('banners', $banners); } } ?> banner_model <?php class Banner extends AppModel { var $name = 'Banner'; } ?> Hope this is all the details you need. Thanks in advance folks :) Joe :)

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• Nice, clean, simple way of getting a dataset from ASP.NET to plain HTML jQuery or JavaScript library

  - by David S

  I know this is a probable open ended question, and I have tried looking around so much over the last year or two... maybe I am looking for a perfect place that doesn't exist! of course it's all about perception no less.. Anyway, just to clarify what I am trying to do and why: I want to be able to use (primarily for the moment) ASP.NET or services thereof to get a dataset - whatever the source data, I can obviously get a dataset of rows/Columns. I want to be able to, as simply as possible, get that data over to the client via xml/json/whatever, to then use in a "variety" of ways. "Variety" of ways meaning I would like to "easily" bind that data to say a grid, or a combo dropdown or just simply render to a textbox - BUT by referencing the dataset as I would say on the serverside. Now I know this all sounds simplistic, and I know there are lots of complications.. so I have tried the following so far over the last year or so: ExtJS - very good, nice solid framework, but just found it a bit too much to use in everyday basic apps - great if I was building a whole application with it Yahoo YUI - not looked recently, but I guess some of the concepts with ExtJS were similar? JQuery - of course to get data etc, it was ok, and I guess there are so many 3rd party plugins, that a mix and match might work? Adobe SPRY - ironically this was as close to getting a dataset style structure to Javascript/client, although it seemed to drop off/go quiet..? I maybe wrong.. I did have a very cursory play with Tibco GI and another one I cannot remember the name of! but again, it felt like it was great to build a whole app perhaps? Anyway, I am very amazed by all of the technologies coming out, and really not biased one way or the other, I really just want a very simple way of getting data from the server, and having a basic/very flexible way of working with that data in the client without using server technologies.. I need to keep the server flexible as I may need to use PHP, or java technologies not just .NET So again, sorry for the rambles, but if anyone out there has had a simple experience, or would like to share some ideas, it would be very welcomed!! David.

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• Error in glmmadmb(.....) The function maximizer failed (couldn't find STD file)

  - by Joe King

  This works fine: fit.mc1 <-MCMCglmm(bull~1,random=~school,data=dt1,family="categorical", prior=list(R=list(V=1, fix=1), G=list(G1=list(V=1, nu=0))), slice=T) So does this: fit.glmer <- glmer(bull~(1|school),data=dt1,family=binomial) But now I am trying to work with the package glmmadmb and this does not work: fit.mc12 <- glmmadmb(bull~1+(1|school), data=dt1, family="binomial", mcmc=TRUE, mcmc.opts=mcmcControl(mcmc=50000)) It generates the error: Error in glmmadmb(bull~ 1 + (1 | school), data = dt1, family = "binomial", : The function maximizer failed (couldn't find STD file) In addition: Warning message: running command '<snip>\cmd.exe <snip>\glmmadmb.exe" -maxfn 500 -maxph 5 -noinit -shess -mcmc 5000 -mcsave 5 -mcmult 1' had status 1

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• Can Git or Mercurial be set to bypass the local repository and go straight to the central one?

  - by Jian Lin

  Using Git or Mercurial, if the working directory is 1GB, then the local repository will be another 1GB (at least), residing normally in the same hard drive. And then when pushed to a central repository, there will be another 1GB. Can Git or Mercurial be set to use only a working directory and then a central repository, without having 3 copies of this 1GB data? (actually, when the central repository also update, then there are 4 copies of the same data... can it be reduced? In the SVN scenario, when there are 5 users, then there will be 6GB of data total. With Distributed Version Control, then there will be 12GB of data?)

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• Strange problem with NSMutableArray - Possibly some memory corruption

  - by user210504

  Hi! I am trying to update data in a table view using a NSMutableArray. Quite simple :( What is happening is that I get my data from a NSURLConnection Callback, which I parse and store it in an array and call reload data on the table view. The problem is that when cellForRowAtIndexPath is called back by the framework. The array still shows the correct count of the elements but all string objects I had stored earlier are shown as invalid. Any pointers

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• How to Import a CSV file containing multiple sections into R?

  - by PaulHurleyuk

  I want to import the contents of a csv file into R, the csv file contains multiple sections of data vertically, seperated by blank lines and asterisks. For example ******************************************************** * SAMPLE DATA ****************************************** ******************************************************** Name, DOB, Sex Rod, 1/1/1970, M Jane, 5/7/1980, F Freddy, 9.12,1965, M ******************************************************* * Income Data **************************************** ******************************************************* Name, Income Rod, 10000 Jane, 15000 Freddy, 7500 I would like to import this into R as two seperate dataframes. Currently I'm manually cutting the csv file up into smaller files, but I think I could do it using read.csv and the skip and nrows settings of read.csv, If I could work out where the secion breaks are. This gives me a logical TRUE for every blank line ifelse(readLines("DATA.csv")=="",TRUE,FALSE) I'm hoping someone has already solved this problem.

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• NSKeyedArchiver / Unarchiver

  - by Tejaswi Yerukalapudi

  Hi, I'm using NSKeyedArchiver to persist multiple objects in my application. The persistence is working fine, but I can't find a way to delete a specific object from the file. How do I delete this object programmatically? Thanks, Teja

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• FIFO dequeueing in python?

  - by Aaron Ramsey

  hello again everybody— I'm looking to make a functional (not necessarily optimally efficient, as I'm very new to programming) FIFO queue, and am having trouble with my dequeueing. My code looks like this: class QueueNode: def __init__(self, data): self.data = data self.next = None def __str__(self): return str(self.data) class Queue: def__init__(self): self.front = None self.rear = None self.size = 0 def enqueue(self, item) newnode = QueueNode(item) newnode.next = None if self.size == 0: self.front = self.rear = newnode else: self.rear = newnode self.rear.next = newnode.next self.size = self.size+1 def dequeue(self) dequeued = self.front.data del self.front self.size = self.size-1 if self.size == 0: self.rear = None print self.front #for testing if I do this, and dequeue an item, I get the error "AttributeError: Queue instance has no attribute 'front'." I guess my function doesn't properly assign the new front of the queue? I'm not sure how to fix it though. I don't really want to start from scratch, so if there's a tweak to my code that would work, I'd prefer that—I'm not trying to minimize runtime so much as just get a feel for classes and things of that nature. Thanks in advance for any help, you guys are the best.

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• Is there any live video stream editing open source project with API for my needs?

  - by Ole Jak

  I need an open source project with an API capable of reading a live video stream (stream codec can be any API can read - I can provide with practically any live streamable one) giving me last image data for some processing (like brightness\contrast or more exotic filtering) being able to receive data I've changed and starting to stream that data on to some http://localhost:port/ in some format I need it to be easily accessible from C# (even better, written in C#).

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• Twitter json output

  - by Bunny Rabbit

  $(function(){ $.ajax({ url:'http://api.twitter.com/1/statuses/user_timeline.json?screen_name=user_name&callback=?', //dataType:'json', success:function(data){$('body').append('the data is' +data);} }); }); the above code with dataType line prints out [objects] while with the dataType line commented it prints out nothing ...how can i get it to print the json output from the server rather then the javascript object?

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• Redundancy algorithm for reading noisy bitstream

  - by Tedd Hansen

  I'm reading a lossy bit stream and I need a way to recover as much usable data as possible. There can be 1's in place of 0's and 0's in palce of 1's, but accuracy is probably over 80%. A bonus would be if the algorithm could compensate for missing/too many bits as well. The source I'm reading from is analogue with noise (microphone via FFT), and the read timing could vary depending on computer speed. I remember reading about algorithms used in CD-ROM's doing this in 3? layers, so I'm guessing using several layers is a good option. I don't remember the details though, so if anyone can share some ideas that would be great! :) Edit: Added sample data Best case data: in: 0000010101000010110100101101100111000000100100101101100111000000100100001100000010000101110101001101100111000101110000001001111011001100110000001001100111011110110101011100111011000100110000001000010111 out: 0010101000010110100101101100111000000100100101101100111000000100100001100000010000101110101001101100111000101110000001001111011001100110000001001100111011110110101011100111011000100110000001000010111011 Bade case (timing is off, samples are missing): out: 00101010000101101001011011001110000001001001011011001110000001001000011000000100001011101010011011001 in: 00111101001011111110010010111111011110000010010000111000011101001101111110000110111011110111111111101 Edit2: I am able to controll the data being sent. Currently attempting to implement simple XOR checking (though it won't be enough).

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• how to change file permissions in postfix ?

  - by Zdanozdan

  Hi, In the postfix main.cf I have configured service to invoke external php script. smtp inet n - - - - smtpd -o content_filter=myservice:www-data myservice unix - n n - 1 pipe flags=Rq user=me null_sender= argv=/home/me/my_script.php so far so good, my_script.php is executed. It creates the file my_file.txt in home dir. However I can only manage -rw------- 1 me www-data 16 2009-10-11 19:35 my_file.txt How do I add 'r' permissions for www-data group ?

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• R: Why does read.table stop reading a file?

  - by Mike Dewar

  I have a file, called genes.txt, which I'd like to become a data.frame. It's got a lot of lines, each line has three, tab delimited fields: mike$ wc -l genes.txt 42476 genes.txt I'd like to read this file into a data.frame in R. I use the command read.table, like this: genes = read.table( genes_file, sep="\t", na.strings="-", fill=TRUE, col.names=c("GeneSymbol","synonyms","description") ) Which seems to work fine, where genes_file points at genes.txt. However, the number of lines in my data.frame is significantly less than the number of lines in my text file: > nrow(genes) [1] 27896 and things I can find in the text file: mike$ grep "SELL" genes.txt SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L don't seem to be in the data.frame > grep("SELL",genes$GeneSymbol) integer(0) it turns out that genes = read.delim( genes_file, header=FALSE, na.strings="-", fill=TRUE, col.names=c("GeneSymbol","synonyms","description"), ) works just fine. Why does read.delim work when read.table not? If it's of use, you can recreate genes.txt using the following commands which you should run from a command line curl -O ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz gzip -cd gene_info.gz | awk -Ft '$1==9606{print $3 "\t" $5 "\t" $9}' > genes.txt be warned, though, that gene_info.gz is 101MBish.

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• MySQL Column Value Pivot

  - by manyxcxi

  I have a MySQL InnoDB table laid out like so: id (int), run_id (int), element_name (varchar), value (text), line_order, column_order `MyDB`.`MyTable` ( `id` bigint(20) NOT NULL, `run_id` int(11) NOT NULL, `element_name` varchar(255) NOT NULL, `value` text, `line_order` int(11) default NULL, `column_order` int(11) default NULL It is used to store data generated by a Java program that used to output this in CSV format, hence the line_order and column_order. Lets say I have 2 entries (according to the table description): 1,1,'ELEMENT 1','A',0,0 2,1,'ELEMENT 2','B',0,1 I want to pivot this data in a view for reporting so that it would look like more like the CSV would, where the output would look this: --------------------- |ELEMENT 1|ELEMENT 2| --------------------- | A | B | --------------------- The data coming in is extremely dynamic; it can be in any order, can be any of over 900 different elements, and the value could be anything. The Run ID ties them all together, and the line and column order basically let me know where the user wants that data to come back in order.

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