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• Can't ssh to ec2 permission denied (publickey)

  - by Chris Barnes

  I have existing instances running and I can connect to them fine. Even if I start a new instance from one of my saved ami's I can connect to it fine but any new public or community ami (I've tried 2 offical Ubuntu ami's and 1 Fedora quickstart ami) I get permission denied (publickey). The permissions are good on my key file. I've also tried creating a new keyfile. My ec2 firewall rules are good, I've also tried creating a new group. This is the error I'm getting. ssh -v -i ec2-keypair [email protected] OpenSSH_5.2p1, OpenSSL 0.9.7l 28 Sep 2006 debug1: Reading configuration data /Users/chris/.ssh/config debug1: Reading configuration data /etc/ssh_config debug1: Connecting to ec2-xxx.xxx.xxx.xxx.compute-1.amazonaws.com [xxx.xxx.xxx.xxx] port 22. debug1: Connection established. debug1: identity file ec2-keypair type -1 debug1: Remote protocol version 2.0, remote software version OpenSSH_5.1p1 Debian-6ubuntu2 debug1: match: OpenSSH_5.1p1 Debian-6ubuntu2 pat OpenSSH* debug1: Enabling compatibility mode for protocol 2.0 debug1: Local version string SSH-2.0-OpenSSH_5.2 debug1: SSH2_MSG_KEXINIT sent debug1: SSH2_MSG_KEXINIT received debug1: kex: server->client aes128-ctr hmac-md5 none debug1: kex: client->server aes128-ctr hmac-md5 none debug1: SSH2_MSG_KEX_DH_GEX_REQUEST(1024<1024<8192) sent debug1: expecting SSH2_MSG_KEX_DH_GEX_GROUP debug1: SSH2_MSG_KEX_DH_GEX_INIT sent debug1: expecting SSH2_MSG_KEX_DH_GEX_REPLY debug1: Host 'ec2-xxx.xxx.xxx.xxx.compute-1.amazonaws.com' is known and matches the RSA host key. debug1: Found key in /Users/chris/.ssh/known_hosts:13 debug1: ssh_rsa_verify: signature correct debug1: SSH2_MSG_NEWKEYS sent debug1: expecting SSH2_MSG_NEWKEYS debug1: SSH2_MSG_NEWKEYS received debug1: SSH2_MSG_SERVICE_REQUEST sent debug1: SSH2_MSG_SERVICE_ACCEPT received debug1: Authentications that can continue: publickey debug1: Next authentication method: publickey debug1: Trying private key: ec2-keypair debug1: read PEM private key done: type RSA debug1: Authentications that can continue: publickey debug1: No more authentication methods to try. Permission denied (publickey).

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• EC2 SSH access from fedora

  - by Randika Rathugama

  I'm trying to connect to existing instance of EC2 with a new PEM. But I get this error when I try to connect. Here is what I did so far. I created the PEM on EC2 and saved it to ~/.ssh/my-fedora.pem and ran this command; is there anything else I should do? [randika@localhost ~]$ ssh -v -i ~/.ssh/my-fedora.pem [email protected] OpenSSH_5.3p1, OpenSSL 1.0.0-fips-beta4 10 Nov 2009 debug1: Reading configuration data /etc/ssh/ssh_config debug1: Applying options for * debug1: Connecting to ec2-xx-xxx-xxx-xx.compute-1.amazonaws.com [xx-xx-xx-xx] port 22. debug1: Connection established. debug1: identity file /home/randika/.ssh/saberion-fedora.pem type -1 debug1: Remote protocol version 2.0, remote software version OpenSSH_4.7 debug1: match: OpenSSH_4.7 pat OpenSSH_4* debug1: Enabling compatibility mode for protocol 2.0 debug1: Local version string SSH-2.0-OpenSSH_5.3 debug1: SSH2_MSG_KEXINIT sent debug1: SSH2_MSG_KEXINIT received debug1: kex: server->client aes128-ctr hmac-md5 none debug1: kex: client->server aes128-ctr hmac-md5 none debug1: SSH2_MSG_KEX_DH_GEX_REQUEST(1024<1024<8192) sent debug1: expecting SSH2_MSG_KEX_DH_GEX_GROUP debug1: SSH2_MSG_KEX_DH_GEX_INIT sent debug1: expecting SSH2_MSG_KEX_DH_GEX_REPLY debug1: Host 'ec2-xx-xxx-xxx-xx.compute-1.amazonaws.com' is known and matches the RSA host key. debug1: Found key in /home/randika/.ssh/known_hosts:5 debug1: ssh_rsa_verify: signature correct debug1: SSH2_MSG_NEWKEYS sent debug1: expecting SSH2_MSG_NEWKEYS debug1: SSH2_MSG_NEWKEYS received debug1: SSH2_MSG_SERVICE_REQUEST sent debug1: SSH2_MSG_SERVICE_ACCEPT received debug1: Authentications that can continue: publickey,gssapi-with-mic debug1: Next authentication method: gssapi-with-mic debug1: Unspecified GSS failure. Minor code may provide more information Credentials cache file '/tmp/krb5cc_500' not found debug1: Unspecified GSS failure. Minor code may provide more information Credentials cache file '/tmp/krb5cc_500' not found debug1: Unspecified GSS failure. Minor code may provide more information debug1: Next authentication method: publickey debug1: Offering public key: [email protected] debug1: Authentications that can continue: publickey,gssapi-with-mic debug1: Offering public key: [email protected] debug1: Authentications that can continue: publickey,gssapi-with-mic debug1: Trying private key: /home/randika/.ssh/saberion-fedora.pem debug1: read PEM private key done: type RSA debug1: Authentications that can continue: publickey,gssapi-with-mic debug1: No more authentication methods to try. Permission denied (publickey,gssapi-with-mic).

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• Python performance improvement request for winkler

  - by Martlark

  I'm a python n00b and I'd like some suggestions on how to improve the algorithm to improve the performance of this method to compute the Jaro-Winkler distance of two names. def winklerCompareP(str1, str2): """Return approximate string comparator measure (between 0.0 and 1.0) USAGE: score = winkler(str1, str2) ARGUMENTS: str1 The first string str2 The second string DESCRIPTION: As described in 'An Application of the Fellegi-Sunter Model of Record Linkage to the 1990 U.S. Decennial Census' by William E. Winkler and Yves Thibaudeau. Based on the 'jaro' string comparator, but modifies it according to whether the first few characters are the same or not. """ # Quick check if the strings are the same - - - - - - - - - - - - - - - - - - # jaro_winkler_marker_char = chr(1) if (str1 == str2): return 1.0 len1 = len(str1) len2 = len(str2) halflen = max(len1,len2) / 2 - 1 ass1 = '' # Characters assigned in str1 ass2 = '' # Characters assigned in str2 #ass1 = '' #ass2 = '' workstr1 = str1 workstr2 = str2 common1 = 0 # Number of common characters common2 = 0 #print "'len1', str1[i], start, end, index, ass1, workstr2, common1" # Analyse the first string - - - - - - - - - - - - - - - - - - - - - - - - - # for i in range(len1): start = max(0,i-halflen) end = min(i+halflen+1,len2) index = workstr2.find(str1[i],start,end) #print 'len1', str1[i], start, end, index, ass1, workstr2, common1 if (index > -1): # Found common character common1 += 1 #ass1 += str1[i] ass1 = ass1 + str1[i] workstr2 = workstr2[:index]+jaro_winkler_marker_char+workstr2[index+1:] #print "str1 analyse result", ass1, common1 #print "str1 analyse result", ass1, common1 # Analyse the second string - - - - - - - - - - - - - - - - - - - - - - - - - # for i in range(len2): start = max(0,i-halflen) end = min(i+halflen+1,len1) index = workstr1.find(str2[i],start,end) #print 'len2', str2[i], start, end, index, ass1, workstr1, common2 if (index > -1): # Found common character common2 += 1 #ass2 += str2[i] ass2 = ass2 + str2[i] workstr1 = workstr1[:index]+jaro_winkler_marker_char+workstr1[index+1:] if (common1 != common2): print('Winkler: Wrong common values for strings "%s" and "%s"' % \ (str1, str2) + ', common1: %i, common2: %i' % (common1, common2) + \ ', common should be the same.') common1 = float(common1+common2) / 2.0 ##### This is just a fix ##### if (common1 == 0): return 0.0 # Compute number of transpositions - - - - - - - - - - - - - - - - - - - - - # transposition = 0 for i in range(len(ass1)): if (ass1[i] != ass2[i]): transposition += 1 transposition = transposition / 2.0 # Now compute how many characters are common at beginning - - - - - - - - - - # minlen = min(len1,len2) for same in range(minlen+1): if (str1[:same] != str2[:same]): break same -= 1 if (same > 4): same = 4 common1 = float(common1) w = 1./3.*(common1 / float(len1) + common1 / float(len2) + (common1-transposition) / common1) wn = w + same*0.1 * (1.0 - w) return wn

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• Adding a UIPickerView over a UITabBarController

  - by Kai

  I'm trying to have a UIPickerView slide from the bottom of the screen (over the top of a tab bar) but can't seem to get it to show up. The actual code for the animation is coming from one of Apple's example code projects (DateCell). I'm calling this code from the first view controller (FirstViewController.m) under the tab bar controller. - (IBAction)showModePicker:(id)sender { if (self.modePicker.superview == nil) { [self.view.window addSubview:self.modePicker]; // size up the picker view to our screen and compute the start/end frame origin for our slide up animation // // compute the start frame CGRect screenRect = [[UIScreen mainScreen] applicationFrame]; CGSize pickerSize = [self.modePicker sizeThatFits:CGSizeZero]; CGRect startRect = CGRectMake(0.0, screenRect.origin.y + screenRect.size.height, pickerSize.width, pickerSize.height); self.modePicker.frame = startRect; // compute the end frame CGRect pickerRect = CGRectMake(0.0, screenRect.origin.y + screenRect.size.height - pickerSize.height, pickerSize.width, pickerSize.height); // start the slide up animation [UIView beginAnimations:nil context:NULL]; [UIView setAnimationDuration:0.3]; // we need to perform some post operations after the animation is complete [UIView setAnimationDelegate:self]; self.modePicker.frame = pickerRect; // shrink the vertical size to make room for the picker CGRect newFrame = self.view.frame; newFrame.size.height -= self.modePicker.frame.size.height; self.view.frame = newFrame; [UIView commitAnimations]; // add the "Done" button to the nav bar self.navigationItem.rightBarButtonItem = self.doneButton; }} Whenever this action fires via a UIBarButtonItem that lives in a UINavigationBar (which is all under the FirstViewController) nothing happens. Can anyone please offer some advice?

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• Thoughts on GoGrid vs EC2

  - by Jason

  I am currently hosting my SaaS application at GoGrid (Microsoft stack). Here's what I have: Database Server - physical box, 12 GB RAM, 2 X Quad Core CPU (2.13 GHz Xeon E5506) 2 Web / App servers - cloud servers, 2 GB RAM, 2 VCPUs 300 GB monthly bandwidth I am paying around $900 / month for this. My web / app servers are busting at the seams and need to be upgraded to 4 GB of RAM. I also need a firewall, and GoGrid just added this service for an additional $200. After the upgrade, I will be paying around $1,400. I started looking at Amazon EC2, specifically this config: Database server - "High Memory Double Extra Large Instance" - 34 GB RAM, 13 EC2 compute units 2 Web / App servers - "Large Instance" - 7.5 GB RAM, 4 EC2 compute units If I go with 1 year reserved instances, my upfront cost would be $4,500 and my monthly would be $700. This comes to $1,075 / month when amortized. Amazon also includes a firewall for free. Here are my questions: Do any of you have experience running a database (especially SQL Server) on an EC2 instance? How did it perform compared to a dedicated machine? One of my major concerns is with disk I/O. Amazon's description of a compute unit is fairly vague. Any ideas on how the CPU performance on the database servers would compare? I am hoping that the Amazon solution will provide significantly better performance than my current or even improved GoGrid setup. Having a virtual database server would also be nice in terms of availability. Right now I would be in serious trouble if I had any hardware issues. Thanks for any insight...

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• Trait, FunctionN, or trait-inheriting-FunctionN in Scala?

  - by Willis Blackburn

  I have a trait in Scala that has a single method. Call it Computable and the single method is compute(input: Int): Int. I can't figure out whether I should Leave it as a standalone trait with a single method. Inherit from (Int = Int) and rename "compute" to "apply." Just get rid of Computable and use (Int = Int). A factor in favor of it being a trait is that I could usefully add some additional methods. But of course if they were all implemented in terms of the compute method then I could just break them out into a separate object. A factor in favor of just using the function type is simplicity and the fact that the syntax for an anonymous function is more concise than that for an anonymous Computable instance. But then I've no way to distinguish objects that are actually Computable instances from other functions that map Int to Int but aren't meant to be used in the same context as Computable. How do other people approach this type of problem? No right or wrong answers here; I'm just looking for advice.

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• Splitting a set of object into several subsets of 'similar' objects

  - by doublep

  Suppose I have a set of objects, S. There is an algorithm f that, given a set S builds certain data structure D on it: f(S) = D. If S is large and/or contains vastly different objects, D becomes large, to the point of being unusable (i.e. not fitting in allotted memory). To overcome this, I split S into several non-intersecting subsets: S = S1 + S2 + ... + Sn and build Di for each subset. Using n structures is less efficient than using one, but at least this way I can fit into memory constraints. Since size of f(S) grows faster than S itself, combined size of Di is much less than size of D. However, it is still desirable to reduce n, i.e. the number of subsets; or reduce the combined size of Di. For this, I need to split S in such a way that each Si contains "similar" objects, because then f will produce a smaller output structure if input objects are "similar enough" to each other. The problems is that while "similarity" of objects in S and size of f(S) do correlate, there is no way to compute the latter other than just evaluating f(S), and f is not quite fast. Algorithm I have currently is to iteratively add each next object from S into one of Si, so that this results in the least possible (at this stage) increase in combined Di size: for x in S: i = such i that size(f(Si + {x})) - size(f(Si)) is min Si = Si + {x} This gives practically useful results, but certainly pretty far from optimum (i.e. the minimal possible combined size). Also, this is slow. To speed up somewhat, I compute size(f(Si + {x})) - size(f(Si)) only for those i where x is "similar enough" to objects already in Si. Is there any standard approach to such kinds of problems? I know of branch and bounds algorithm family, but it cannot be applied here because it would be prohibitively slow. My guess is that it is simply not possible to compute optimal distribution of S into Si in reasonable time. But is there some common iteratively improving algorithm?

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• openstack, bridging, netfilter and dnat

  - by Craig Sanders

  In a recent upgrade (from Openstack Diablo on Ubuntu Lucid to Openstack Essex on Ubuntu Precise), we found that DNS packets were frequently (almost always) dropped on the bridge interface (br100). For our compute-node hosts, that's a Mellanox MT26428 using the mlx4_en driver module. We've found two workarounds for this: Use an old lucid kernel (e.g. 2.6.32-41-generic). This causes other problems, in particular the lack of cgroups and the old version of the kvm and kvm_amd modules (we suspect the kvm module version is the source of a bug we're seeing where occasionally a VM will use 100% CPU). We've been running with this for the last few months, but can't stay here forever. With the newer Ubuntu Precise kernels (3.2.x), we've found that if we use sysctl to disable netfilter on bridge (see sysctl settings below) that DNS started working perfectly again. We thought this was the solution to our problem until we realised that turning off netfilter on the bridge interface will, of course, mean that the DNAT rule to redirect VM requests for the nova-api-metadata server (i.e. redirect packets destined for 169.254.169.254:80 to compute-node's-IP:8775) will be completely bypassed. Long-story short: with 3.x kernels, we can have reliable networking and broken metadata service or we can have broken networking and a metadata service that would work fine if there were any VMs to service. We haven't yet found a way to have both. Anyone seen this problem or anything like it before? got a fix? or a pointer in the right direction? Our suspicion is that it's specific to the Mellanox driver, but we're not sure of that (we've tried several different versions of the mlx4_en driver, starting with the version built-in to the 3.2.x kernels all the way up to the latest 1.5.8.3 driver from the mellanox web site. The mlx4_en driver in the 3.5.x kernel from Quantal doesn't work at all) BTW, our compute nodes have supermicro H8DGT motherboards with built-in mellanox NIC: 02:00.0 InfiniBand: Mellanox Technologies MT26428 [ConnectX VPI PCIe 2.0 5GT/s - IB QDR / 10GigE] (rev b0) we're not using the other two NICs in the system, only the Mellanox and the IPMI card are connected. Bridge netfilter sysctl settings: net.bridge.bridge-nf-call-arptables = 0 net.bridge.bridge-nf-call-iptables = 0 net.bridge.bridge-nf-call-ip6tables = 0 Since discovering this bridge-nf sysctl workaround, we've found a few pages on the net recommending exactly this (including Openstack's latest network troubleshooting page and a launchpad bug report that linked to this blog-post that has a great description of the problem and the solution)....it's easier to find stuff when you know what to search for :), but we haven't found anything on the DNAT issue that it causes.

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• Shorten Long DNS names

  - by user32425

  Hi, Amazon gives us a very long dns names i.e. c-123-123-123-255.compute-1.amazonaws.com Is there a way to map this name into a shorter name i.e. essentially what i want to do is to modify /etc/hosts file, and map the long name into a short one, i.e. aws1 c-123-123-123-255.compute-1.amazonaws.com but because /etc/hosts file only accepts ip address mapping, then I cannot do that. Is there any other way to do this? Thanks

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• BackupExec 12 to Bacula questions

  - by LVDave

  We have a 128 node compute cluster for environmental modeling, with a master/head node which we currently backup with a Windows2003 system running BackupExec 12 and a single HP LTO3 tape drive. We have recently ordered an Overland NEO200s 12 slot library, and are considering migrating off Windows to CentOS 5 for the backup server. The master/head node is RHEL5, with the compute nodes currently being migrated from a mix of RHEL3/4/5 to CentOS5. I'm fairly familiar with RH/Centos, but have no experience with Bacula. We've tentatively settled on Bacula as our cluster vendor recommended it. My questions are: 1) Does Bacula support an Overland NEO200s/LTO3 library? 2) Can Bacula catalog/restore tapes written by BE? and 3) I've head of Amanda, but am even more unfamiliar with it than Bacula. Any assistance would be appreciated Dave Frandin

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• Unable to SSH into EC2 instance on Fedora 17

  - by abhishek

  I did following steps But I am not able to SSH to it(Same steps work fine on Fedora 14 image). I am getting Permission denied (publickey,gssapi-keyex,gssapi-with-mic) I created new instance using fedora 17 amazon community image(ami-2ea50247). I copied my ssh keys under /home/usertest/.ssh/ after creating a usertest I have SELINUX=disabled here is Debug info: $ ssh -vvv ec2-54-243-101-41.compute-1.amazonaws.com ssh -vvv ec2-54-243-101-41.compute-1.amazonaws.com OpenSSH_5.2p1, OpenSSL 1.0.0b-fips 16 Nov 2010 debug1: Reading configuration data /etc/ssh/ssh_config debug1: Applying options for * debug2: ssh_connect: needpriv 0 debug1: Connecting to ec2-54-243-101-41.compute-1.amazonaws.com [54.243.101.41] port 22. debug1: Connection established. debug1: identity file /home/usertest/.ssh/identity type -1 debug1: identity file /home/usertest/.ssh/id_rsa type -1 debug3: Not a RSA1 key file /home/usertest/.ssh/id_dsa. debug2: key_type_from_name: unknown key type '-----BEGIN' debug3: key_read: missing keytype debug2: key_type_from_name: unknown key type 'Proc-Type:' debug3: key_read: missing keytype debug2: key_type_from_name: unknown key type 'DEK-Info:' debug3: key_read: missing keytype debug3: key_read: missing whitespace debug3: key_read: missing whitespace debug3: key_read: missing whitespace debug3: key_read: missing whitespace debug3: key_read: missing whitespace debug3: key_read: missing whitespace debug3: key_read: missing whitespace debug3: key_read: missing whitespace debug3: key_read: missing whitespace debug3: key_read: missing whitespace debug2: key_type_from_name: unknown key type '-----END' debug3: key_read: missing keytype debug1: identity file /home/usertest/.ssh/id_dsa type 2 debug1: Remote protocol version 2.0, remote software version OpenSSH_5.9 debug1: match: OpenSSH_5.9 pat OpenSSH* debug1: Enabling compatibility mode for protocol 2.0 debug1: Local version string SSH-2.0-OpenSSH_5.2 debug2: fd 3 setting O_NONBLOCK debug1: SSH2_MSG_KEXINIT sent debug1: SSH2_MSG_KEXINIT received debug2: kex_parse_kexinit: diffie-hellman-group-exchange-sha256,diffie-hellman-group-exchange-sha1,diffie-hellman-group14-sha1,diffie-hellman-group1-sha1 debug2: kex_parse_kexinit: ssh-rsa,ssh-dss debug2: kex_parse_kexinit: aes128-ctr,aes192-ctr,aes256-ctr,arcfour256,arcfour128,aes128-cbc,3des-cbc,blowfish-cbc,cast128-cbc,aes192-cbc,aes256-cbc,arcfour,[email protected] debug2: kex_parse_kexinit: aes128-ctr,aes192-ctr,aes256-ctr,arcfour256,arcfour128,aes128-cbc,3des-cbc,blowfish-cbc,cast128-cbc,aes192-cbc,aes256-cbc,arcfour,[email protected] debug2: kex_parse_kexinit: hmac-md5,hmac-sha1,[email protected],hmac-ripemd160,[email protected],hmac-sha1-96,hmac-md5-96 debug2: kex_parse_kexinit: hmac-md5,hmac-sha1,[email protected],hmac-ripemd160,[email protected],hmac-sha1-96,hmac-md5-96 debug2: kex_parse_kexinit: none,[email protected],zlib debug2: kex_parse_kexinit: none,[email protected],zlib debug2: kex_parse_kexinit: debug2: kex_parse_kexinit: debug2: kex_parse_kexinit: first_kex_follows 0 debug2: kex_parse_kexinit: reserved 0 debug2: kex_parse_kexinit: diffie-hellman-group-exchange-sha256,diffie-hellman-group-exchange-sha1,diffie-hellman-group14-sha1,diffie-hellman-group1-sha1 debug2: kex_parse_kexinit: ssh-rsa,ssh-dss debug2: kex_parse_kexinit: aes128-ctr,aes192-ctr,aes256-ctr,arcfour256,arcfour128,aes128-cbc,3des-cbc,blowfish-cbc,cast128-cbc,aes192-cbc,aes256-cbc,arcfour,[email protected] debug2: kex_parse_kexinit: aes128-ctr,aes192-ctr,aes256-ctr,arcfour256,arcfour128,aes128-cbc,3des-cbc,blowfish-cbc,cast128-cbc,aes192-cbc,aes256-cbc,arcfour,[email protected] debug2: kex_parse_kexinit: hmac-md5,hmac-sha1,[email protected],hmac-sha2-256,hmac-sha2-256-96,hmac-sha2-512,hmac-sha2-512-96,hmac-ripemd160,[email protected],hmac-sha1-96,hmac-md5-96 debug2: kex_parse_kexinit: hmac-md5,hmac-sha1,[email protected],hmac-sha2-256,hmac-sha2-256-96,hmac-sha2-512,hmac-sha2-512-96,hmac-ripemd160,[email protected],hmac-sha1-96,hmac-md5-96 debug2: kex_parse_kexinit: none,[email protected] debug2: kex_parse_kexinit: none,[email protected] debug2: kex_parse_kexinit: debug2: kex_parse_kexinit: debug2: kex_parse_kexinit: first_kex_follows 0 debug2: kex_parse_kexinit: reserved 0 debug2: mac_setup: found hmac-md5 debug1: kex: server->client aes128-ctr hmac-md5 none debug2: mac_setup: found hmac-md5 debug1: kex: client->server aes128-ctr hmac-md5 none debug1: SSH2_MSG_KEX_DH_GEX_REQUEST(1024<1024<8192) sent debug1: expecting SSH2_MSG_KEX_DH_GEX_GROUP debug2: dh_gen_key: priv key bits set: 131/256 debug2: bits set: 506/1024 debug1: SSH2_MSG_KEX_DH_GEX_INIT sent debug1: expecting SSH2_MSG_KEX_DH_GEX_REPLY debug3: check_host_in_hostfile: filename /home/usertest/.ssh/known_hosts debug3: check_host_in_hostfile: match line 17 debug3: check_host_in_hostfile: filename /home/usertest/.ssh/known_hosts debug3: check_host_in_hostfile: match line 17 debug1: Host 'ec2-54-243-101-41.compute-1.amazonaws.com' is known and matches the RSA host key. debug1: Found key in /home/usertest/.ssh/known_hosts:17 debug2: bits set: 500/1024 debug1: ssh_rsa_verify: signature correct debug2: kex_derive_keys debug2: set_newkeys: mode 1 debug1: SSH2_MSG_NEWKEYS sent debug1: expecting SSH2_MSG_NEWKEYS debug2: set_newkeys: mode 0 debug1: SSH2_MSG_NEWKEYS received debug1: SSH2_MSG_SERVICE_REQUEST sent debug2: service_accept: ssh-userauth debug1: SSH2_MSG_SERVICE_ACCEPT received debug2: key: /home/usertest/.ssh/identity ((nil)) debug2: key: /home/usertest/.ssh/id_rsa ((nil)) debug2: key: /home/usertest/.ssh/id_dsa (0x7f904b5ae260) debug1: Authentications that can continue: publickey,gssapi-keyex,gssapi-with-mic debug3: start over, passed a different list publickey,gssapi-keyex,gssapi-with-mic debug3: preferred gssapi-with-mic,publickey,keyboard-interactive,password debug3: authmethod_lookup gssapi-with-mic debug3: remaining preferred: publickey,keyboard-interactive,password debug3: authmethod_is_enabled gssapi-with-mic debug1: Next authentication method: gssapi-with-mic debug3: Trying to reverse map address 54.243.101.41. debug1: Unspecified GSS failure. Minor code may provide more information Credentials cache file '/tmp/krb5cc_500' not found debug1: Unspecified GSS failure. Minor code may provide more information Credentials cache file '/tmp/krb5cc_500' not found debug1: Unspecified GSS failure. Minor code may provide more information debug2: we did not send a packet, disable method debug3: authmethod_lookup publickey debug3: remaining preferred: keyboard-interactive,password debug3: authmethod_is_enabled publickey debug1: Next authentication method: publickey debug1: Trying private key: /home/usertest/.ssh/identity debug3: no such identity: /home/usertest/.ssh/identity debug1: Trying private key: /home/usertest/.ssh/id_rsa debug3: no such identity: /home/usertest/.ssh/id_rsa debug1: Offering public key: /home/usertest/.ssh/id_dsa debug3: send_pubkey_test debug2: we sent a publickey packet, wait for reply debug1: Authentications that can continue: publickey,gssapi-keyex,gssapi-with-mic debug2: we did not send a packet, disable method debug1: No more authentication methods to try. Permission denied (publickey,gssapi-keyex,gssapi-with-mic).

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• Amazon EC2: Not able to open web application even if port it opened

  - by learner

  I have a t1.micro instance with public dns looks similar to ec2-184-72-67-202.compute-1.amazonaws.com (some numbers changed) On this machine, I am running a django app $ sudo python manage.py runserver --settings=vlists.settings.dev Validating models... 0 errors found Django version 1.4.1, using settings 'vlists.settings.dev' Development server is running at http://127.0.0.1:8000/ I have opened the port 8000 through AWS console Now when I hit the following in Chrome http://ec2-184-72-67-202.compute-1.amazonaws.com:8000, I get Oops! Google Chrome could not connect to WHat is that I am doing wrong?

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• Fourier transform software

  - by CFP

  Hello everyone! After spending a lot of time searching for this, I thought that some SuperUser gurus might know the answer :) I'm searching for an open source application to compute an FFT, that could: * Import a list of points from a text file (in any format, I could write conversion scripts if needed), for example 0,1; 1,2; 4,5 * Compute the associated discrete transform, and output the list of coefficients Ideally, it would also display the plot and the associated fourier decomposition on the same graph, to allow comparison, but this is not absolutely needed. It can be either on Windows or on Linux/Unix. Can you think of a solution? Thanks, CFP.

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• Multiple IP Addresses on a Traceroute Line

  - by Paul

  I'm doing a traceroute from my box to ....say.... stackoverflow.com. I see a couple of instances where there are multiple ip's on one line. For instance, in below, line #2 has two IPs: 10.1.6.5 and 10.1.4.5 Also on line #4, there are two timestamps after 216.182.236.96: 0.653 ms and 0.637 ms What are these? This is on Linux Traceroute example: traceroute to www.stackoverflow.com (198.252.206.16), 30 hops max, 60 byte packets 2 ip-10-1-6-5.us-west-1.compute.internal (10.1.6.5) 0.329 ms 0.425 ms ip-10-1-4-5.us-west-1.compute.internal (10.1.4.5) 0.471 ms 4 216.182.236.104 (216.182.236.104) 0.554 ms 216.182.236.96 (216.182.236.96) 0.653 ms 0.637 ms 5 205.251.230.64 (205.251.230.64) 0.616 ms 205.251.229.232 (205.251.229.232) 1.305 ms 205.251.230.64 (205.251.230.64) 0.573 ms

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• How to install a proxy LDAP

  - by Jean-Claude

  I have to install an LDAP proxy on a compute cluster frontend. The idea is to avoid the compute nodes to make too many requests on the campus LDAP server. How can I install this to make it work with the school's LDAP? The frontend OS is a RHEL 6.2. I found that I have to install the LDAP server and configure it as a proxy. But all I can find is examples of /etc/openldap/slapd.conf file configuration but after testing different configuration, no results. Furthermore, according to RHEL 6 - Deployment Guide, this config file is obsolete: OpenLDAP no longer reads its configuration from the /etc/openldap/slapd.conf file. Instead, it uses a configuration database located in the /etc/openldap/slapd.d/ directory. Any help is welcomed. Thank you

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• AWS:EC2:: Could not connect FTP client?

  - by heathub

  My Server OS: Amazon Linux I am trying to set up ftp. I have: Installed vsftpd open port 20-21 open port 1024 - 1048 Basically, I followed every of these steps Start vsftpd service (the status indicate [ok]) I use filezilla for my ftp client. Here is my setting/configuration: Host: ec2-XX-XX-XXX-XX.compute-1.amazonaws.com Port: -(blank, but I have tried 20 and 21 though) Server Type: FTP - File Transder Protocol Logon Type: Normal Username: (tried root and ec2-user) Transfer mode: Tried passive and active I always has this error: Status: Waiting to retry... Status: Resolving address of ec2-XX-XX-XXX-XX.compute-1.amazonaws.com Status: Connecting to XX.XX.XXX.XX:21... Error: Connection timed out Error: Could not connect to server Have I missed any configuration/settings? EDIT After execute the /sbin/iptables -L -n Here is the result: Chain INPUT (policy ACCEPT) target prot opt source destination Chain FORWARD (policy ACCEPT) target prot opt source destination Chain OUTPUT (policy ACCEPT) target prot opt source destination

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• How should we serve files in a small bioinformatics cluster?

  - by cespinoza

  We have a small cluster of six ubuntu servers. We run bioinformatics analyses on these clusters. Each analysis takes about 24 hours to complete, each core i7 server can handle 2 at a time, takes as input about 5GB data and outputs about 10-25GB of data. We run dozens of these a week. The software is a hodgepodge of custom perl scripts and 3rd party sequence alignment software written in C/C++. Currently, files are served from two of the compute nodes (yes, we're using compute nodes as file servers)-- each node has 5 1TB sata drives mounted separately (no raid) and is pooled via glusterfs 2.0.1. They each have as 3 bonded intel ethernet pci gigabit ethernet cards, attached to a d-link DGS-1224T switch ($300 24 port consumer-level). We are not currently using jumbo frames (not sure why, actually). The two file-serving compute nodes are then mirrored via glusterfs. Each of the four other nodes mounts the files via glusterfs. The files are all large (4gb+), and are stored as bare files (no database/etc) if that matters. As you can imagine, this is a bit of a mess that grew organically without forethought and we want to improve it now that we're running out of space. Our analyses are I/O intensive and it is a bottle neck-- we're only getting 140mB/sec between the two fileservers, maybe 50mb/sec from the clients (which only have single NICs). We have a flexible budget which I can probably get up $5k or so. How should we spend our budget? We need at least 10TB of storage fast enough to serve all nodes. How fast/big does the cpu/memory of such a file server have to be? Should we use NFS, ATA over Ethernet, iSCSI, Glusterfs, or something else? Should we buy two or more servers and create some sort of storage cluster, or is 1 server enough for such a small number of nodes? Should we invest in faster NICs (say, PCI-express cards with multiple connectors)? The switch? Should we use raid, if so, hardware or software? and which raid (5, 6, 10, etc)? Any ideas appreciated. We're biologists, not IT gurus.

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• ArchBeat Link-o-Rama for December 11, 2012

  - by Bob Rhubart

  Good To Know - Conflicting View Objects and Shared Entity | Andrejus Baranovskis Oracle ACE Director Andrejus Baranovskis shares his thoughts—and a sample application—dealing with an "interesting ADF behavior" encountered over the weekend. Patching Oracle Exalogic - Updating Linux on the Compute Nodes - Part 1 | Jos Nijhoff Jos Nijhoff launches a series of posts the deal with "patching the operating system on the modified Sun Fire X4170 M2 servers...dubbed compute nodes in Exalogic terminology." Expanding on requestaudit - Tracing who is doing what...and for how long | Kyle Hatlestad "One of the most helpful tracing sections in WebCenter Content (and one that is on by default) is the requestaudit tracing," says Oracle Fusion Middleware A-Team architect Kyle Hatlestad. Get up close and technical in his post. Oracle Data Integrator Presentation from NYOUG Webinar | Gurcan Orhan Oracle ACE Director and award-winning data warehouse architect Gurcan Orhan shares his presentation from the recent NYOUG LI SIG. SOA 11g Technology Adapters – ECID Propagation | Greg Mally "Many SOA Suite 11g deployments include the use of the technology adapters for various activities including integration with FTP, database, and files to name a few," says Oracle Fusion Middleware A-Team member Greg Mally. "Although the integrations with these adapters are easy and feature rich, there can be some challenges from the operations perspective." Greg's post focuses on technical tips for dealing with one of these challenges. Missing Duties for RUP3 upgrade in Fusion Applications Richard from the Oracle Fusion Middleware A-Team explains how to safely apply policy store changes in thirteen easy steps. Thought for the Day "Well over half of the time you spend working on a project (on the order of 70 percent) is spent thinking, and no tool, no matter how advanced, can think for you." — Frederick P. Brooks Source: SoftwareQuotes.com

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• make-like build tools for data?

  - by miku

  Make is a standard tools for building software. But make decides whether a target needs to be regenerated by comparing file modification times. Are there any proven, preferably small tools that handle builds not for software but for data? Something that regenerates targets not only on mod times but on certain other properties (e.g. completeness). (Or alternatively some paper that describes such a tool.) As illustration: I'd like to automate the following process: get data (e.g. a tarball) from some regularly updated source copy somewhere if it's not there (based e.g. on some filename-scheme) convert the files to different format (but only if there aren't successfully converted ones there - e.g. from a previous attempt - custom comparison routine) for each file find a certain data element and fetch some additional file from say an URL, but only if that hasn't been downloaded yet (decide on existence of file and file "freshness") finally compute something (e.g. word count for something identifiable and store it in the database, but only if the DB does not have an entry for that exact ID yet) Observations: there are different stages each stage is usually simple to compute or implement in isolation each stage may be simple, but the data volume may be large each stage may produce a few errors each stage may have different signals, on when (re)processing is needed Requirements: builds should be interruptable and idempotent (== robust) when interrupted, already processed objects should be reused to speedup the next run data paths should be easy to adjust (simple syntax, nothing new to learn, internal dsl would be ok) some form of dependency graph, that describes the process would be nice for later visualizations should leverage existing programs, if possible I've done some research on make alternatives like rake and have worked a lot with ant and maven in the past. All these tools naturally focus on code and software build, not on data builds. A system we have in place now for a task similar to the above is pretty much just shell scripts, which are compact (and are a ok glue for a variety of other programs written in other languages), so I wonder if worse is better?

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• How to read Scala code with lots of implicits?

  - by Petr Pudlák

  Consider the following code fragment (adapted from http://stackoverflow.com/a/12265946/1333025): // Using scalaz 6 import scalaz._, Scalaz._ object Example extends App { case class Container(i: Int) def compute(s: String): State[Container, Int] = state { case Container(i) => (Container(i + 1), s.toInt + i) } val d = List("1", "2", "3") type ContainerState[X] = State[Container, X] println( d.traverse[ContainerState, Int](compute) ! Container(0) ) } I understand what it does on high level. But I wanted to trace what exactly happens during the call to d.traverse at the end. Clearly, List doesn't have traverse, so it must be implicitly converted to another type that does. Even though I spent a considerable amount of time trying to find out, I wasn't very successful. First I found that there is a method in scalaz.Traversable traverse[F[_], A, B] (f: (A) => F[B], t: T[A])(implicit arg0: Applicative[F]): F[T[B]] but clearly this is not it (although it's most likely that "my" traverse is implemented using this one). After a lot of searching, I grepped scalaz source codes and I found scalaz.MA's method traverse[F[_], B] (f: (A) => F[B])(implicit a: Applicative[F], t: Traverse[M]): F[M[B]] which seems to be very close. Still I'm missing to what List is converted in my example and if it uses MA.traverse or something else. The question is: What procedure should I follow to find out what exactly is called at d.traverse? Having even such a simple code that is so hard analyze seems to me like a big problem. Am I missing something very simple? How should I proceed when I want to understand such code that uses a lot of imported implicits? Is there some way to ask the compiler what implicits it used? Or is there something like Hoogle for Scala so that I can search for a method just by its name?

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• Building a Store Locator ASP.NET Application Using Google Maps API (Part 1)

  Over the past couple of months I've been working on a couple of projects that have used the free Google Maps API to add interactive maps and geocoding capabilities to ASP.NET websites. In a nutshell, the Google Maps API allow you to display maps on your website, to add markers onto the map, and to compute the latitude and longitude of an address, among many other tasks. With some Google Maps API experience under my belt, I decided it would be fun to implement a store locator feature and share it here on 4Guys. A store locator lets a visitor enter an address or postal code and then shows the nearby stores. Typically, store locators display the nearby stores on both a map and in a grid, along with the distance between the entered address and each store within the area. To see a store locator in action, check out the Wells Fargo store locator. This article is the first in a multi-part series that walks through how to add a store locator feature to your ASP.NET application. In this inaugural article, we'll build the database table to hold the store information. Next, we'll explore how to use the Google Maps API's geocoding feature to allow for flexible address entry and how to translate an address into latitude and longitude pairs. Armed with the latitude and longitude coordinates, we'll see how to retrieve nearby locations as well as how to compute the distance between the address entered by the visitor and the each nearby store. (A future installment will examine how to display a map showing the nearby stores.) Read on to learn more! Read More >

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• Building a Store Locator ASP.NET Application Using Google Maps API (Part 1)

  Over the past couple of months I've been working on a couple of projects that have used the free Google Maps API to add interactive maps and geocoding capabilities to ASP.NET websites. In a nutshell, the Google Maps API allow you to display maps on your website, to add markers onto the map, and to compute the latitude and longitude of an address, among many other tasks. With some Google Maps API experience under my belt, I decided it would be fun to implement a store locator feature and share it here on 4Guys. A store locator lets a visitor enter an address or postal code and then shows the nearby stores. Typically, store locators display the nearby stores on both a map and in a grid, along with the distance between the entered address and each store within the area. To see a store locator in action, check out the Wells Fargo store locator. This article is the first in a multi-part series that walks through how to add a store locator feature to your ASP.NET application. In this inaugural article, we'll build the database table to hold the store information. Next, we'll explore how to use the Google Maps API's geocoding feature to allow for flexible address entry and how to translate an address into latitude and longitude pairs. Armed with the latitude and longitude coordinates, we'll see how to retrieve nearby locations as well as how to compute the distance between the address entered by the visitor and the each nearby store. (A future installment will examine how to display a map showing the nearby stores.) Read on to learn more! Read More >Did you know that DotNetSlackers also publishes .net articles written by top known .net Authors? We already have over 80 articles in several categories including Silverlight. Take a look: here.

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• learn the programming language for computing functions about integers

  - by asd

  Hi I know something about Pascal, Mathematica and Matlab, but I dont have any idea about C,C++,C# languages. I want to learn one of the languages that they they are fast and exact to compute some arithmetic functions for large numbers(for example larger than $10^3000$). I asked somebody and he said he used C++ and he said I computed this sequence in less than 10 min. I want to know C, C++, C# and visual kind of theses programs and know which is better for my goal. Let $f$ be an arithmetic function and A={k1,k2,...,kn} are integers in increasing order. Now I want to start with k1 and compare f(ki) with f(k1). If f(ki)f(k1), put ki as k1. Now start with ki, and compare f(kj) with f(ki), for ji. If f(kj)f(ki), put kj as ki, and repeat this procedure. At the end we will have a sub sequence B={L1,...,Lm} of A by this property: f(L(i+1))f(L(i)), for any 1<=i<=m-1 I have written a code for this program with Mathematica, and it take some hours to compute f of ki's or the set B for large numbers. For example, let f is the divisor function of integers. Do you know how to write the code for my purpose in Mathematica or Matlab. Mathematica is preferable.

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• Z-order with Alpha blending in a 3D world

  - by user41765

  I'm working on a game in a 3D world with 2D sprites only (like Don't Starve game). (OpenGL ES2 with C++) Currently, I'm ordering elements back to front before drawing them without batch (so 1 element = 1 drawcall). I would like to implement batching in my framework to decrease draw calls. Here is what I've got for the moment: Order all elements of my scene back to front. Send order list of elements to the Renderer. Renderer look in his batch manager if a batch exist for the given element with his Material. Batch didn't exist: create a new one. Batch exist for element with this Material: Add sprite to the batch. Compute big mesh with all sprite for each batch (1 material type = 1 batch). When all batches are ok, the batch manager compute draw commands for the renderer. Renderer process draw commands (bind shader, bind textures, bind buffers, draw element) Image with my problem here: Explication here But I've got some problems because objects can be behind another objects inside another batch. How can I do something like that? Thanks!

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• What is the best way to check if there is overlap between player and static, non-collidable items in bullet physic engine

  - by tigrou

  I'd like to add non collidable objects (eg: power ups, items, ...) in a game world using Bullet Physics Engine and to know if there is collision between player and them. Some info : there is a lot of items ( 1000), all are box shapes and they don't overlap. Here is things i have tried : btDbvt* bvtItems = new btDbvt(); //btDbvt is a hierachical AABB tree, used by Bullet foreach(var item ...) { btDbvtVolume volume = ... //compute item AABB; bvtItems->insert(volume, (void*)someExtraData); } Then, to find collisions between items and player : playerRigidBody->getAabb(min, max); btDbvtVolume playervolume = ... //compute player AABB bvtItems->collideTV(bvtItems->m_root, playervolume, *someCollisionHandler); This works fairly well (and its very fast), however, there is a problem : it only check items AABB against player AABB. That loss of precision is acceptable for items but not for player which is not a box. It would actually need another check to make sure player really collide with item but i don't know how to do this in Bullet. It would have been nice to have a function like this : playerRigidBody->checkCollisionWithAABB(); After doing trying that, I discovered that a btGhostObject exist and seems to have been made for that. I changed my code like this : foreach(var item...) { btCollisionObject* ghostObject = new btGhostObject(); ghostObject->setCollisionShape(boxShape); ghostObject->setCollisionFlags(ghostObject->getCollisionFlags() | btCollisionObject::CF_NO_CONTACT_RESPONSE); startTransform.setOrigin(...); //item position ghostObject->setWorldTransform(startTransform); dynamicsWorld->addCollisionObject(ghostObject, btBroadphaseProxy::SensorTrigger, btBroadphaseProxy:: CharacterFilter); } It also works ok, but there is a huge fps drop (almost ten times slower) which is not acceptable. Maybe there is something missing (forget set a flag) and Bullet is doing extra job for nothing or maybe all that ghostObjects are polluting broad phase and ghostObject is not the right thing for that. Any help would be appreciated.

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