Binomial test in Python

Posted by Morlock on Stack Overflow See other posts from Stack Overflow or by Morlock
Published on 2010-06-16T18:38:08Z Indexed on 2010/06/16 18:42 UTC
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I need to do a binomial test in Python that allows calculation for 'n' numbers of the order of 10000.

I have implemented a quick binomial_test function using scipy.misc.comb, however, it is pretty much limited around n = 1000, I guess because it reaches the biggest representable number while computing factorials or the combinatorial itself. Here is my function:

from scipy.misc import comb
def binomial_test(n, k):
    """Calculate binomial probability
    """
    p = comb(n, k) * 0.5**k * 0.5**(n-k)
    return p

How could I use a native python (or numpy, scipy...) function in order to calculate that binomial probability? If possible, I need scipy 0.7.2 compatible code.

Many thanks!

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