Recovering data from mangodb raw files

Posted by Jin Chen on Server Fault See other posts from Server Fault or by Jin Chen
Published on 2014-08-21T09:40:21Z Indexed on 2014/08/21 10:21 UTC
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we use mongodb for our database and set the replset(two servers), but we mistakenly deleted some raw files that under /path/to/dbdata on both servers, after we used tool to get back the deleted files(we ran the extundelete on both server and mix the result together), like database.1, database.2 etc. we could not start the mongod, it raised the following error when starting mongod or executing mongodump, here is the console output:

root@mongod:/opt/mongodb# mongodump --repair --dbpath /opt/mongodb -d database_production Thu Aug 21 16:22:43.258 [tools] warning: repair is a work in progress Thu Aug 21 16:22:43.258 [tools] going to try and recover data from: database_production Thu Aug 21 16:22:43.262 [tools] Assertion failure isOk() src/mongo/db/pdfile.h 392 0xde1b01 0xda42fd 0x8ae325 0x8ac492 0x8bd8e0 0x8c1c51 0x80e345 0x80e607 0x80e6a4 0x6db92a 0x6dc1ff 0x6e0db9 0xd9e45e 0x6ccdc7 0x7f499d856ead 0x6ccc29 mongodump(_ZN5mongo15printStackTraceERSo+0x21) [0xde1b01] mongodump(_ZN5mongo12verifyFailedEPKcS1_j+0xfd) [0xda42fd] mongodump(_ZNK5mongo7Forward4nextERKNS_7DiskLocE+0x1a5) [0x8ae325] mongodump(_ZN5mongo11BasicCursor7advanceEv+0x82) [0x8ac492] mongodump(_ZN5mongo8Database19clearTmpCollectionsEv+0x160) [0x8bd8e0] mongodump(_ZN5mongo14DatabaseHolder11getOrCreateERKSsS2_Rb+0x7b1) [0x8c1c51] mongodump(_ZN5mongo6Client7Context11_finishInitEv+0x65) [0x80e345] mongodump(_ZN5mongo6Client7ContextC1ERKSsS3_b+0x87) [0x80e607] mongodump(ZN5mongo6Client12WriteContextC1ERKSsS3+0x54) [0x80e6a4] mongodump(_ZN4Dump7_repairESs+0x3a) [0x6db92a] mongodump(_ZN4Dump6repairEv+0x2df) [0x6dc1ff] mongodump(_ZN4Dump3runEv+0x1b9) [0x6e0db9] mongodump(_ZN5mongo4Tool4mainEiPPc+0x13de) [0xd9e45e] mongodump(main+0x37) [0x6ccdc7] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xfd) [0x7f499d856ead] mongodump(__gxx_personality_v0+0x471) [0x6ccc29] assertion: 0 assertion src/mongo/db/pdfile.h:392 Thu Aug 21 16:22:43.271 dbexit: Thu Aug 21 16:22:43.271 [tools] shutdown: going to close listening sockets... Thu Aug 21 16:22:43.271 [tools] shutdown: going to flush diaglog... Thu Aug 21 16:22:43.271 [tools] shutdown: going to close sockets... Thu Aug 21 16:22:43.272 [tools] shutdown: waiting for fs preallocator... Thu Aug 21 16:22:43.272 [tools] shutdown: closing all files... Thu Aug 21 16:22:43.273 [tools] closeAllFiles() finished Thu Aug 21 16:22:43.273 [tools] shutdown: removing fs lock... Thu Aug 21 16:22:43.273 dbexit: really exiting now

my env: 1) Debian 3.2.35-2 x86_64(it's a XEN virtual machine) 2) mongodb 2.4.6

and we did not delete the .0 and .ns files we tried to create a new database with the same name and copy these db.ns and db.2, db.3 to the new db, we still met the same error.

is there any way to check the valid of raw .ns and datafiles, and how to recover the database?

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