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  • asn.1 parser in C/Python

    - by elventear
    I am looking for a solution to parse asn.1 spec files and generate a decoder from those. Ideally I would like to work with Python modules, but if nothing is available I would use C/C++ libraries and interface them with Python with the plethora of solutions out there. In the past I have been using pyasn1 and building everything by hand but that has become too unwieldly. I have also looked superficially to libtasn1 and asn1c. The first one had problems parsing even the simplest of files. The second has a good parser but generating C code for decoding seems too complex; the solution worked well with straightforward specs but choked on complex ones. Any other good alternatives I may have overlooked?

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  • Why the good append syntax is so ugly, asks python newbie

    - by Cawas
    Now following my series of "python newbie questions" and based on another question. Go to http://python.net/~goodger/projects/pycon/2007/idiomatic/handout.html#other-languages-have-variables and scroll down to "Default Parameter Values". There you can find the following: def bad_append(new_item, a_list=[]): a_list.append(new_item) return a_list def good_append(new_item, a_list=None): if a_list is None: a_list = [] a_list.append(new_item) return a_list So, question here is: why is the "good" syntax over a known issue ugly like that in a programming language that promotes "elegant syntax" and "easy-to-use"? Why not just something in the definition itself, that the "argument" name is attached to a "localized" mutable object like: def better_append(new_item, a_list=[].local): a_list.append(new_item) return a_list I'm sure there would be a better way to do this syntax, but I'm also almost positive there's a good reason to why it hasn't been done. So, anyone happens to know why?

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  • hierarchical clustering with gene expression matrix in python

    - by user248237
    how can I do a hierarchical clustering (in this case for gene expression data) in Python in a way that shows the matrix of gene expression values along with the dendrogram? What I mean is like the example here: http://www.mathworks.cn/access/helpdesk/help/toolbox/bioinfo/ug/a1060813239b1.html shown after bullet point 6 (Figure 1), where the dendrogram is plotted to the left of the gene expression matrix, where the rows have been reordered to reflect the clustering. How can I do this in Python using numpy/scipy or other tools? Also, is it computationally practical to do this with a matrix of about 11,000 genes, using euclidean distance as a metric? thanks.

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  • exceptions with python unicode encode/decode functions (why doesn't errors=ignore actually ignore th

    - by gatoatigrado
    Does anyone know why the string conversion functions throw exceptions when errors="ignore" is passed? How can I convert from regular Python string objects to unicode without errors being thrown? Thanks very much! python -c "import codecs; codecs.open('tmp', 'wb', encoding='utf8', errors='ignore').write('?????')" returns Traceback (most recent call last): File "", line 1, in File "/usr/lib/python2.6/codecs.py", line 686, in write return self.writer.write(data) File "/usr/lib/python2.6/codecs.py", line 351, in write data, consumed = self.encode(object, self.errors) UnicodeDecodeError: 'ascii' codec can't decode byte 0xd0 in position 0: ordinal not in range(128)

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  • Python proxy an application

    - by sharvey
    Does anyone know of a library that enables you to run an application inside some kind of sandbox, with virtual mouse and keyboard support. The use case would be to create some kind of visual test runner, that would replay all actions taken during recording and play them back. So far I found autopy, but the fact that it controls the real mouse position is problematic, because it prevents user interaction with other tools (debugger or anything) while running. Cross platform would be nice, but either windows or os x is fine. Python would be ideal but anything that you could create python bindings for would be ok too.

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  • Problems with South/Django: not recognizing the Django App

    - by christmasgorilla
    I've got a Django project on my machine and when I try to use South to migrate the data schema, I get several odd errors. Example: $ python manage.py convert_to_south thisLocator /Library/Python/2.6/site-packages/registration/models.py:4: DeprecationWarning: the sha module is deprecated; use the hashlib module instead import sha /Users/cm/code/thisLocator/../thisLocator/batches/models.py:6: DeprecationWarning: the md5 module is deprecated; use hashlib instead import md5 There is no enabled application matching 'thisLocator'. I've followed the South documentation. Settings.py has it in the installed apps, I can run import south from the manage.py shell. Everyone else on my team is calling the app thisLocator. Am I doing something really stupid?

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  • Python: win32console import problem

    - by David
    I want to run wexpect (the windows port of pexpect) on my Windows 7 64-bit machine. I am getting the following error: C:\Program Files (x86)\wexpect\build\libwexpect.py Traceback (most recent call last): File "C:\Program Files (x86)\wexpect\build\lib\wexpect.py", line 97, in raise ImportError(str(e) + "This package was intended for Windows like operating systems.") ImportError: No module named win32console This package requires the win32 python packages.This package was intended for Windows like operatin g systems. In the code it is failing on the following line: from win32console import * I am using Python 2.6.4. I cannot figure out how to install win32console.

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  • Problem with stackless python, cannot write to a dict

    - by ANON
    I have simple map-reduce type algorithm, which I want to implement in python and make use of multiple cores. I read somewhere that threads using native thread module in 2.6 dont make use of multiple cores. is that true? I even implemented it using stackless python however i am getting into weird errors [Update: a quick search showed that the stack less does not allows multiple cores So are their any other alternatives?] def Propagate(start,end): print "running Thread with range: ",start,end def maxVote(nLabels): count = {} maxList = [] maxCount = 0 for nLabel in nLabels: if nLabel in count: count[nLabel] += 1 else: count[nLabel] = 1 #Check if the count is max if count[nLabel] > maxCount: maxCount = count[nLabel]; maxList = [nLabel,] elif count[nLabel]==maxCount: maxList.append(nLabel) return random.choice(maxList) for num in range(start,end): node=MapList[num] nLabels = [Label[k] for k in Adj[node]] if (nLabels!=[]): Label[node] = maxVote(nLabels) else: Label[node]=node However in above code the values assigned to Label, that is the change in dictionary are lost. Above propagate function is used as callable for MicroThreads (i.e. TaskLets)

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  • python foursquare - SSL3 certificate verify failed

    - by user1814277
    I'm trying to make a userless request to the Foursquare API using Mike Lewis' Python wrapper - https://github.com/mLewisLogic/foursquare: client = foursquare.Foursquare(client_id=Client_ID, client_secret=Client_Secret) categs = client.venues.categories() Intermittently, I get a "Error connecting to Foursquare API" msg. Running a logger to catch a more detailed message produces: "SSL routines:SSL3_GET_SERVER_CERTIFICATE:certificate verify failed" This didn't use to happen and occurs both on my local Windows development machine and on a server running ubuntu. Am I missing something basic here about security certificates? The problem is intermittent and sometimes just leaving it a minute and retrying fixes the problem temporarily. I've downloaded the latest 20120716 version of the wrapper although in the code for init.py it still says API_VERSION = '20120608'. I'm using Python 2.73 and have also signed up for the Foursquare API key, using the id and secret in the above code. I listed the urls, using my local IP:8000 and tried using separate keys for the local and dev machines but this seems to make no difference. Help much appreciated. Thanks.

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  • Google App Engine ClassNotPersistenceCapableException

    - by Frank
    I have the following class : import javax.jdo.annotations.IdGeneratorStrategy; import javax.jdo.annotations.IdentityType; import javax.jdo.annotations.PersistenceCapable; import javax.jdo.annotations.Persistent; import javax.jdo.annotations.PrimaryKey; import com.google.appengine.api.datastore.*; @PersistenceCapable(identityType=IdentityType.APPLICATION) public class PayPal_Message { @PrimaryKey @Persistent(valueStrategy=IdGeneratorStrategy.IDENTITY) private Long id; @Persistent private Text content; @Persistent private String time; public PayPal_Message(Text content,String time) { this.content=content; this.time=time; } public Long getId() { return id; } public Text getContent() { return content; } public String getTime() { return time; } public void setContent(Text content) { this.content=content; } public void setTime(String time) { this.time=time; } } It used to be in a package, and works fine, now I put all classes in the default package, which caused me this error : org.datanucleus.jdo.exceptions.ClassNotPersistenceCapableException: The class "The class "PayPal_Message" is not persistable. This means that it either hasnt been enhanced, or that the enhanced version of the file is not in the CLASSPATH (or is hidden by an unenhanced version), or the Meta-Data/annotations for the class are not found." is not persistable. This means that it either hasnt been enhanced, or that the enhanced version of the file is not in the CLASSPATH (or is hidden by an unenhanced version), or the Meta-Data for the class is not found. NestedThrowables: org.datanucleus.exceptions.ClassNotPersistableException: The class "PayPal_Message" is not persistable. This means that it either hasnt been enhanced, or that the enhanced version of the file is not in the CLASSPATH (or is hidden by an unenhanced version), or the Meta-Data/annotations for the class are not found. What should I do to fix it ?

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  • Python equivalent of Java's compareTo()

    - by astay13
    I'm doing a project in Python (3.2) for which I need to compare user defined objects. I'm used to OOP in Java, where one would define a compareTo() method in the class that specifies the natural ordering of that class, as in the example below: public class Foo { int a, b; public Foo(int aa, int bb) { a = aa; b = bb; } public int compareTo(Foo that) { // return a negative number if this < that // return 0 if this == that // return a positive number if this > that if (this.a == that.a) return this.b - that.b; else return this.a - that.a; } } I'm fairly new to classes/objects in Python, so I'd like to know what is the "pythonic" way to define the natural ordering of a class?

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  • Mac OS X pygame input goes to Terminal instead of Python

    - by Parappa
    I'm having trouble running a pygame based app on Mac OS X via Terminal. Input events such as keystrokes go to the Terminal instead of my Python app, and are detected by pygame. For example, I have the following test script: import pygame pygame.init() screen = pygame.display.set_mode((640, 480)) done = False while not done: pygame.event.pump() keys = pygame.key.get_pressed() if keys[pygame.K_ESCAPE]: done = True if keys[pygame.K_SPACE]: print "got here" Neither K_ESCAPE nor K_SPACE will be handled by this script when I run it from a Mac OS X Terminal, but Terminal will echo back the spaces. I'm running the MacPorts port of pygame (py-game), which depends on Python 2.4, and I've also used python_select to make python24 the active version.

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  • running an outside program (executable) in python?

    - by Mesut
    Hello all, I just started working on python and I have been trying to run an outside executable form python. I have an executable for a program written in Fortran. Lets say the name for the executable is flow.exe. And my executable is lacated in C:\Documents and Settings\flow_model I tried both os.system and popen commands but so far couldnt make it work. The following code seems like opens the command window but wouldnt execute the model. # Import system modules import sys, string, os, arcgisscripting os.system("C:/Documents and Settings/flow_model/flow.exe") Any suggestions out there? Any help would be greatly appreciated.

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  • Python Framework for small website

    - by mvid
    I am planning a small, simple website to showcase myself as an engineer. My preferred language is Python and I hope to use it to create my website. My pages will be mostly static, with some database stored posts/links. The site will be simple, but I would like to have freedom in how it operates. I plan on using CSS/JS for the design, so I really just need an easy way to throw a small amount of content around. Some frameworks I have come across: Flask cherry.py Pinax Are there any suggestions? Does anyone have any experience with Python on small/hobby websites?

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  • Django syncdb not making tables for my app

    - by Rosarch
    It used to work, and now it doesn't. python manage.py syncdb no longer makes tables for my app. From settings.py: INSTALLED_APPS = ( 'django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.sites', 'mysite.myapp', 'django.contrib.admin', ) What could I be doing wrong? The break appeared to coincide with editing this model in models.py, but that could be total coincidence. I commented out the lines I changed, and it still doesn't work. class MyUser(models.Model): user = models.ForeignKey(User, unique=True) takingReqSets = models.ManyToManyField(RequirementSet, blank=True) takingTerms = models.ManyToManyField(Term, blank=True) takingCourses = models.ManyToManyField(Course, through=TakingCourse, blank=True) school = models.ForeignKey(School) # minCreditsPerTerm = models.IntegerField(blank=True) # maxCreditsPerTerm = models.IntegerField(blank=True) # optimalCreditsPerTerm = models.IntegerField(blank=True) UPDATE: When I run python manage.py loadddata initial_data, it gives an error: DeserializationError: Invalid model identifier: myapp.SomeModel Loading this data had worked fine before. This error is thrown on the very first data object in the data file.

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  • Google Chrome doesn't delete my browsing history correctly

    - by Derfder
    I have deleted everything that I could from my browser history: chrome://settings/clearBrowserData I checked everything and select the begining of time Then when I access browsing history: chrome://history/ There is nothing (as I expected), or to be precise No history entries found. The problem is that I still see my specific search url with very specific query I have made a month ago, when I start typing the url of the website into chrome address bar. How is that possible? Where is Google stroing these data. How to get rid off them completely? I want to mention that my autosuggestion options look like this: So, what else should I delete to remove everything from autosuggestions? Right now it has some specific URLs (subpages, pages with very specific search query I have made in a month or so). I have tried restarting Chrome and restarting my computer, but the urls are still in the autosuggestion. Also I am unable to turn off the autosuggestion, even I have unchecked that option in settings. My Google Chrome version is: Version 27.0.1453.116 m (probably the latest) Btw. in Firefox deleting the history works as expected. So, I guess that this has nothing to do with the operating system I am using (Windows 7), but only it's an issue with Chrome itself.

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  • Python hooks navigation logger windows

    - by user363054
    Hi, I´m trying to do a path logger (Navigation logger) in Python, the thing that I need is that the program can get the paths that de user is accesing in real time, for example: C:\Documents and Settings\ C:\Documents and Settings\Administrator\ C:\Documents and Settings\Administrator\Desktop\ C:\Documents and Settings\Administrator\Desktop\archivos\ C:\Documents and Settings\Administrator\Desktop\Freescale ZeD 1.1.0.lnk C:\Documents and Settings\Administrator\Desktop\Freescale BeeKit.lnk C:\Documents and Settings\All Users\Desktop\PowerISO.lnk Someone knows how I can do this? I read and used the library pyhook, because I think that I need hooks, specially the WH_GETMESSAGE but pyhook doesn't use it and doesn't give the path only things like the Message, the time, the name of the window, etc. Note: I´m using Windows XP 32bits and python 2.6 Thanks in advance!

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  • Cannot easy_install readline for Python 2.7.3 on Mac Os Lion

    - by user11170
    I am trying to install readline for python 2.7.3 installed via homebrew. If I type easy_install readline I get Downloading http://pypi.python.org/packages/source/r/readline/readline-6.2.2.tar.gz#md5=ad9d4a5a3af37d31daf36ea917b08c77 Processing readline-6.2.2.tar.gz Writing /var/folders/44/dhrdb5sx53s243j4w03063vh0000gn/T/easy_install-64FbG8/readline-6.2.2/setup.cfg Running readline-6.2.2/setup.py -q bdist_egg --dist-dir /var/folders/44/dhrdb5sx53s243j4w03063vh0000gn/T/easy_install-64FbG8/readline-6.2.2/egg-dist-tmp-NOmStB clang: error: no such file or directory: 'readline/libreadline.a' clang: error: no such file or directory: 'readline/libhistory.a' error: Setup script exited with error: command '/usr/bin/clang' failed with exit status 1 Any ideas about how I could fix this ? Thanks

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  • Sending email through a Google Apps account is working locally, but not on my web server...

    - by Janis Baldwin
    Related: Send Email via C# through Google Apps account My question is the same so I implemented Koistya's solution as follows. The heartbreak is that it works beautifully on my dev laptop but when ported to web server it times out with no explanation. My SMTP config is in my web.config file. I made mods based on Koistya's answer: <mailSettings> **Changed** <smtp from="[email protected]"> <network host="smtp.gmail.com" password="[password]" port="587" userName="[email protected]"/> </smtp> **Original** <!--<smtp from="[email protected]"> <network host="mail.domain.com" password="[password]" port="25" userName="[email protected]"/> </smtp>--> </mailSettings> My .Net C# code (before & after removed): SmtpClient mSmtpClient = new SmtpClient(); mSmtpClient.EnableSsl = true; mSmtpClient.Send(message); As I said this works great on my dev environment but not on web. Can anyone help? Thanks.

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