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  • iPhone --- 3DES Encryption returns "wrong" results?

    - by Jan Gressmann
    Hello fellow developers, I have some serious trouble with a CommonCrypto function. There are two existing applications for BlackBerry and Windows Mobile, both use Triple-DES encryption with ECB mode for data exchange. On either the encrypted results are the same. Now I want to implent the 3DES encryption into our iPhone application, so I went straight for CommonCrypto: http://www.opensource.apple.com/source/CommonCrypto/CommonCrypto-32207/CommonCrypto/CommonCryptor.h I get some results if I use CBC mode, but they do not correspond with the results of Java or C#. Anyway, I want to use ECB mode, but I don't get this working at all - there is a parameter error showing up... This is my call for the ECB mode... I stripped it a little bit: const void *vplainText; plainTextBufferSize = [@"Hello World!" length]; bufferPtrSize = (plainTextBufferSize + kCCBlockSize3DES) & ~(kCCBlockSize3DES - 1); plainText = (const void *) [@"Hello World!" UTF8String]; NSString *key = @"abcdeabcdeabcdeabcdeabcd"; ccStatus = CCCrypt(kCCEncrypt, kCCAlgorithm3DES, kCCOptionECBMode, key, kCCKeySize3DES, nil, // iv, not used with ECB plainText, plainTextBufferSize, (void *)bufferPtr, // output bufferPtrSize, &movedBytes); t is more or less the code from here: http://discussions.apple.com/thread.jspa?messageID=9017515 But as already mentioned, I get a parameter error each time... When I use kCCOptionPKCS7Padding instead of kCCOptionECBMode and set the same initialization vector in C# and my iPhone code, the iPhone gives me different results. Is there a mistake by getting my output from the bufferPtr? Currently I get the encrypted stuff this way: NSData *myData = [NSData dataWithBytes:(const void *)bufferPtr length:(NSUInteger)movedBytes]; result = [[NSString alloc] initWithData:myData encoding:NSISOLatin1StringEncoding]; It seems I almost tried every setting twice, different encodings and so on... where is my error?

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  • Calculating collision for a moving circle, without overlapping the boundaries

    - by Robert Vella
    Let's say I have circle bouncing around inside a rectangular area. At some point this circle will collide with one of the surfaces of the rectangle and reflect back. The usual way I'd do this would be to let the circle overlap that boundary and then reflect the velocity vector. The fact that the circle actually overlaps the boundary isn't usually a problem, nor really noticeable at low velocity. At high velocity it becomes quite clear that the circle is doing something it shouldn't. What I'd like to do is to programmatically take reflection into account and place the circle at it's proper position before displaying it on the screen. This means that I have to calculate the point where it hits the boundary between it's current position and it's future position -- rather than calculating it's new position and then checking if it has hit the boundary. This is a little bit more complicated than the usual circle/rectangle collision problem. I have a vague idea of how I should do it -- basically create a bounding rectangle between the current position and the new position, which brings up a slew of problems of it's own (Since the rectangle is rotated according to the direction of the circle's velocity). However, I'm thinking that this is a common problem, and that a common solution already exists. Is there a common solution to this kind of problem? Perhaps some basic theories which I should look into?

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  • I need help on this data file to be edited in SOM_PAK format

    - by Mola
    Hi Experts, I am working on Self Organizing Map (SOM) Implementation and i have a microarray dataset which i am trying to read in using some_read_data function, but i keep having an errors when i edit it to have it in SOM_PAK form which is recognise by SOM for reading such as ??? Error using == somtoolbox\som_read_data.m Only 69 vector components on input file data line 1 (dimension is 70) Error in == SomMainFunction at 3 sD = som_read_data('B_r2.txt'); but when i try to read the data without editing which is the original file as shown here: http://rapidshare.com/files/376239367/DLBCL.txt.html It indicates "Data read OK", but i have the following error ??? Error using == unknown Out of memory. Type HELP MEMORY for your options. Error in == somtoolbox\som_bmus.m at 189 Bmus = zeros(dlen,length(which_bmus)); Error in == somvis\somvis_p_matrix.m at 41 [dummy dists] = som_bmus (dat, dat, 2:datlen); Error in == SomMainFunction at 16 [pheight rad_real perc] = somvis_p_matrix(sM,sD); You can get the datafile from here:http://rapidshare.com/files/376239367/DLBCL.txt.html I need someone to help me correct this data for me and put it in SOM_PAK format. I have tried getting it in SOM_PAK format, but it still giving me errors:

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  • Rendering maps from raw SVG data in Java

    - by Lunikon
    In an application of mine I have to display locations and great circle paths in a map which is rendered to PNG and then displayed on the web. For this I simply use a world map (NASA's Blue Marbel in fact) scaled to various "zoom levels" as base image and only display the a part of it matching the final image size and fitting all items to be displayed. Straight forward so far. Now I came across Wikipedia's awesome blank SVG maps which contain all the country codes for easy reference and I was wondering whether it was possible to use those to have more customized colors and to highliht countries etc. So I did a bit of googling and was looking for Java libraries which would enable me to load the blank SVG map to memory allows for easy reference/selection of certain paths do manipulations of coloring, stroke widths etc render to a buffered image as the background for the great-circle paths/nodes What I came across quite often was Batik, but it looks like a really heavy framework and I'm not quite sure whether it is what I'm looking for. I have recently played around with Raphaël a bit and I like the way it handles working with vector graphics in code. If the Java framework for my purpose would feature a similar interface, that would be a nice-to-have. Any recommendations what toolset would be approriate for my purposes?

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  • Solving for the coefficent of linear equations with one known coefficent

    - by CppLearner
    clc; clear all; syms y a2 a3 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % [ 0.5 0.25 0.125 ] [ a2 ] [ y ] % [ 1 1 1 ] [ a3 ] = [ 3 ] % [ 2 4 8 ] [ 6 ] [ 2 ] %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% M = [0.5 0.25 0.125; 1 1 1; 2 4 8]; t = [a2 a3 6]; r = [y 3 2]; sol = M * t' s1 = solve(sol(1), a2) % solve for a2 s2 = solve(sol(2), a3) % solve for a3 This is what I have so far. These are my output sol = conj(a2)/2 + conj(a3)/4 + 3/4 conj(a2) + conj(a3) + 6 2*conj(a2) + 4*conj(a3) + 48 s1 = - conj(a3)/2 - 3/2 - Im(a3)*i s2 = - conj(a2) - 6 - 2*Im(a2)*i sol looks like what we would have if we put them back into equation form: 0.5 * a2 + 0.25 * a3 + 0.125 * a4 a2 + a3 + a4 = 3 2*a2 + 4*a3 + 8*a4 = 2 where a4 is known == 6. My problem is, I am stuck with how to use solve to actually solve these equations to get the values of a2 and a3. s2 solve for a3 but it doesn't match what we have on paper (not quite). a2 + a3 + 6 = 3 should yield a3 = -3 - a2. because of the imaginary. Somehow I need to equate the vector solution sol to the values [y 3 2] for each row.

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  • Convert Justified Paragraph To Image

    - by rsrobbins
    I need to convert a paragraph of text into an image. Converting the text into an image is no problem. I have the code to do that. But the text must be shown as a paragraph with each line centered. That is a problem! Currently I can convert the text into a left justified paragraph because there are carriage returns in the text string. I suppose it could be center justified with spaces in the string but it would be hard to calculate the required spaces. There must be an easier way. What I need is some way to format the text into a paragraph and then convert it back into a string, preserving spaces. This needs to be done in VB.NET for an ASP.NET web application. Any ideas? I could get the paragraph justified in Rich Text Format but I don't know if it can be converted back into a string, preserving spaces. Creating a PDF is another possibility. The image created from the text needs to be 300 DPI with a transparent background. I'm using the DrawString method of a Graphics object to create the image.

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  • Solving quadratic programming using R

    - by user702846
    I would like to solve the following quadratic programming equation using ipop function from kernlab : min 0.5*x'*H*x + f'*x subject to: A*x <= b Aeq*x = beq LB <= x <= UB where in our example H 3x3 matrix, f is 3x1, A is 2x3, b is 2x1, LB and UB are both 3x1. edit 1 My R code is : library(kernlab) H <- rbind(c(1,0,0),c(0,1,0),c(0,0,1)) f = rbind(0,0,0) A = rbind(c(1,1,1), c(-1,-1,-1)) b = rbind(4.26, -1.73) LB = rbind(0,0,0) UB = rbind(100,100,100) > ipop(f,H,A,b,LB,UB,0) Error in crossprod(r, q) : non-conformable arguments I know from matlab that is something like this : H = eye(3); f = [0,0,0]; nsamples=3; eps = (sqrt(nsamples)-1)/sqrt(nsamples); A=ones(1,nsamples); A(2,:)=-ones(1,nsamples); b=[nsamples*(eps+1); nsamples*(eps-1)]; Aeq = []; beq = []; LB = zeros(nsamples,1); UB = ones(nsamples,1).*1000; [beta,FVAL,EXITFLAG] = quadprog(H,f,A,b,Aeq,beq,LB,UB); and the answer is a vector of 3x1 equals to [0.57,0.57,0.57]; However when I try it on R, using ipop function from kernlab library ipop(f,H,A,b,LB,UB,0)) and I am facing Error in crossprod(r, q) : non-conformable arguments I appreciate any comment

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  • C++ design related question

    - by Kotti
    Hi! Here is the question's plot: suppose I have some abstract classes for objects, let's call it Object. It's definition would include 2D position and dimensions. Let it also have some virtual void Render(Backend& backend) const = 0 method used for rendering. Now I specialize my inheritance tree and add Rectangle and Ellipse class. Guess they won't have their own properties, but they will have their own virtual void Render method. Let's say I implemented these methods, so that Render for Rectangle actually draws some rectangle, and the same for ellipse. Now, I add some object called Plane, which is defined as class Plane : public Rectangle and has a private member of std::vector<Object*> plane_objects; Right after that I add a method to add some object to my plane. And here comes the question. If I design this method as void AddObject(Object& object) I would face trouble like I won't be able to call virtual functions, because I would have to do something like plane_objects.push_back(new Object(object)); and this should be push_back(new Rectangle(object)) for rectangles and new Circle(...) for circles. If I implement this method as void AddObject(Object* object), it looks good, but then somewhere else this means making call like plane.AddObject(new Rectangle(params)); and this is generally a mess because then it's not clear which part of my program should free the allocated memory. ["when destroying the plane? why? are we sure that calls to AddObject were only done as AddObject(new something).] I guess the problems caused by using the second approach could be solved using smart pointers, but I am sure there have to be something better. Any ideas?

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  • I need an IDE for typo3 core development in php

    - by Flugan
    Php in itself is difficult for IDEs because of the dynamic nature of the language. My current development environment is mostly netbeans against a local svn copy of the codebase setup in a local development webserver. The code is full text indexed by vistas search engine for almost instant searches. I do a lot of development directly against the main development server using a combination of tools. Putty to interact with the server and deploy by updating an svn checkout on the development server. Tortoise SVN locally to have a fairly rich SVN experience. Netbeans obviously have SVN integration. Most of the changes on the remote server is commited using the putty session. WinSCP to interact with the development server with norton commander like interface as well as the good putty integration. Finally my text editor for remote editing is notepad++ out of habit and because of some nice features and good price. What I'm really missing is good php editing. Because of the way typo3 works almost all objects are instanciated through make instance abstraction that either returns the base class or the customized class if the framework has been extended. I'm not looking for a magic editing package and would like to find an editor which can use annotations to specify the type of commonly used variables.

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  • How do I overload () operator with two parameters; like (3,5)?

    - by hkBattousai
    I have a mathematical matrix class. It contains a member function which is used to access any element of the class. template >class T> class Matrix { public: // ... void SetElement(T dbElement, uint64_t unRow, uint64_t unCol); // ... }; template <class T> void Matrix<T>::SetElement(T Element, uint64_t unRow, uint64_t unCol) { try { // "TheMatrix" is define as "std::vector<T> TheMatrix" TheMatrix.at(m_unColSize * unRow + unCol) = Element; } catch(std::out_of_range & e) { // Do error handling here } } I'm using this method in my code like this: // create a matrix with 2 rows and 3 columns whose elements are double Matrix<double> matrix(2, 3); // change the value of the element at 1st row and 2nd column to 6.78 matrix.SetElement(6.78, 1, 2); This works well, but I want to use operator overloading to simplify things, like below: Matrix<double> matrix(2, 3); matrix(1, 2) = 6.78; // HOW DO I DO THIS?

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  • How to Refresh / Reload a KML layer in OpenLayers. Dynamic KML Layer.

    - by Ozaki
    TLDR See my answer below on how to refresh the layer. So far I have tried action function as follows: function RefreshKMLData(layer) { layer.loaded = false; layer.setVisibility(true); layer.redraw({ force: true }); } set interval of the function: window.setInterval(RefreshKMLData, 5000, KMLLAYER); the layer itself: var KMLLAYER = new OpenLayers.Layer.Vector("MYKMLLAYER", { projection: new OpenLayers.Projection("EPSG:4326"), strategies: [new OpenLayers.Strategy.Fixed()], protocol: new OpenLayers.Protocol.HTTP({ url: MYKMLURL, format: new OpenLayers.Format.KML({ extractStyles: true, extractAttributes: true }) }) }); the url for KMLLAYER with Math random so it doesnt cache: var MYKMLURL = var currentanchorpositionurl = 'http://' + host + '/data?_salt=' + Math.random(); I would have thought that this would Refresh the layer. As by setting its loaded to false unloads it. Visibility to true reloads it and with the Math random shouldn't allow it to cache? So has anyone done this before or know how I can get this to work? TLDR See my answer below on how to refresh the layer.

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  • Variable length argument list - How to understand we retrieved the last argument?

    - by hkBattousai
    I have a Polynomial class which holds coefficients of a given polynomial. One of its overloaded constructors is supposed to receive these coefficients via variable argument list. template <class T> Polynomial<T>::Polynomial(T FirstCoefficient, ...) { va_list ArgumentPointer; va_start(ArgumentPointer, FirstCoefficient); T NextCoefficient = FirstCoefficient; std::vector<T> Coefficients; while (true) { Coefficients.push_back(NextCoefficient); NextCoefficient = va_arg(ArgumentPointer, T); if (/* did we retrieve all the arguments */) // How do I implement this? { break; } } m_Coefficients = Coefficients; } I know that we usually pass an extra parameter which tells the recipient method the total number of parameters, or we pass a sentimental ending parameter. But in order to keep thing short and clean, I don't prefer passing an extra parameter. Is there any way of doing this without modifying the method signature in the example?

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  • Strange Access Denied warning when running the simplest C++ program.

    - by DaveJohnston
    I am just starting to learn C++ (coming from a Java background) and I have come across something that I can't explain. I am working through the C++ Primer book and doing the exercises. Every time I get to a new exercise I create a new .cpp file and set it up with the main method (and any includes I think I will need) e.g.: #include <list> #include <vector> int main(int argc, char **args) { } and just to make sure I go to the command prompt and compile and run: g++ whatever.cpp a.exe Normally this works just fine and I start working on the exercise, but I just did it and got a strange error. It compiles fine, but when I run it it says Access Denied and AVG pops up telling me that a threat has been detected 'Trojan Horse Generic 17.CKZT'. I tried compiling again using the Microsoft Compiler (cl.exe) and it runs fines. So I went back, and added: #include <iostream> compiled using g++ and ran. This time it worked fine. So can anyone tell me why AVG would report an empty main method as a trojan horse but if the iostream header is included it doesn't?

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  • no instance of overloaded function getline c++

    - by Dave
    I'm a bit confused as to what i have incorrect with my script that is causing this error. I have a function which calls a fill for game settings but it doesn't like my getline. Also i should mention these are the files i have included for it: #include <fstream> #include <cctype> #include <map> #include <iostream> #include <string> #include <algorithm> #include <vector> using namespace std;' This is what i have: std::map<string, string> loadSettings(std::string file){ ifstream file(file); string line; std::map<string, string> config; while(std::getline(file, line)) { int pos = line.find('='); if(pos != string::npos) { string key = line.substr(0, pos); string value = line.substr(pos + 1); config[trim(key)] = trim(value); } } return (config); } The function is called like this from my main.cpp //load settings for game std::map<string, string> config = loadSettings("settings.txt"); //load theme for game std::map<string, string> theme = loadSettings("theme.txt"); Where did i go wrong ? Please help! The error: settings.h(61): error C2784: 'std::basic_istream<_Elem,_Traits> &std::getline(std::basic_istream<_Elem,_Traits> &&,std::basic_string<_Elem,_Traits,_Alloc> &)' : could not deduce template argument for 'std::basic_istream<_Elem,_Traits> &&' from 'std::string'

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  • Template trick to optimize out allocations

    - by anon
    I have: struct DoubleVec { std::vector<double> data; }; DoubleVec operator+(const DoubleVec& lhs, const DoubleVec& rhs) { DoubleVec ans(lhs.size()); for(int i = 0; i < lhs.size(); ++i) { ans[i] = lhs[i]] + rhs[i]; // assume lhs.size() == rhs.size() } return ans; } DoubleVec someFunc(DoubleVec a, DoubleVec b, DoubleVec c, DoubleVec d) { DoubleVec ans = a + b + c + d; } Now, in the above, the "a + b + c + d" will cause the creation of 3 temporary DoubleVec's -- is there a way to optimize this away with some type of template magic ... i.e. to optimize it down to something equivalent to: DoubleVec ans(a.size()); for(int i = 0; i < ans.size(); i++) ans[i] = a[i] + b[i] + c[i] + d[i]; You can assume all DoubleVec's have the same # of elements. The high level idea is to have do some type of templateied magic on "+", which "delays the computation" until the =, at which point it looks into itself, goes hmm ... I'm just adding thes numbers, and syntheizes a[i] + b[i] + c[i] + d[i] ... instead of all the temporaries. Thanks!

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  • Ping broadcast on Win XP SP3

    - by PaulH
    I'm trying to ping the broadcast address 255.255.255.255 on WinXP SP3. If I use the command line, I get host error: C:\>ping 255.255.255.255 Ping request could not find host 255.255.255.255. Please check the name and try again. If I try a C++ program using the iphlpapi, IcmpSendEcho() fails and GetLastError returns 11010 IP_REQ_TIMED_OUT. HANDLE h = ::IcmpCreateFile(); IPAddr broadcast = inet_addr( "255.255.255.255" ); BYTE payload[ 32 ] = { 0 }; IP_OPTION_INFORMATION option = { 255, 0, 0, 0, 0 }; // a buffer with room for 32 replies each containing the full payload std::vector< BYTE > replies( 32 * ( sizeof( ICMP_ECHO_REPLY ) + 32 ) ); DWORD res = ::IcmpSendEcho( h, broadcast, payload, sizeof( payload ), &option, &replies[ 0 ], replies.size(), 1000 ); ::IcmpCloseHandle( h ); I can ping the local broadcast 192.168.0.255 with no problem. What do I need to do to ping the global broadcast? Thanks, PaulH

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  • Which cms or script for social network wiki?

    - by Jason
    Hi, I am building a social network. I need a cms that will allow users to contribute content. Each content item will need to have a google map, list of features, ratings, comments, etc. And the content must be editable by other users with revision control. Also, each user should have a profile with their bookmarked content items, contributed items, comments, etc. It's very important that I can create a template for the wiki/content entries so that each item looks uniform. (and as a kick in the teeth, I would like to be able to search for wiki items using a radial search or map) Joomla was my first choice, as I've used it for many projects, but the wiki functionality is not there. I was also setting up a grou.ps site, but the wiki is so-so - not feature rich and it really doesn't have the option I need. Additionally, I know someone out there will mention Drupal. I may consider it if I can see it put to use without and overabundance of custom programming (I don't mind initial coding, but drupal requires constant coding & recoding - with this site, I dont' have that time commitment) I thought about using mediawiki with buddypress, but i'm not sure if that's the way to go. Thoughts?

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  • J2EE and alternatives

    - by Ilya K
    Hello, I am J2SE developer but I have rich web-background (php, perl/cgi and so on) and now I am starting new project. It will have web interface, spaghetti business logic, relational database as storage and connections to other services. I do it from the scratch. My colleagues told me to use spring, spring security and struts. I look briefly at J2EE spec and found that it covers almost all aspects of enterprise application. I asked my colleagues why do they need spring and struts, but looks like they use technologies simply because they are familiar with them and not familiar with classic J2EE stack. So, my question is: what is bad about J2EE? Why do I need spring if there are JNDI lookups? It will take a day or two to create fake InitialContext for unit-tests. And that is all: I stand with out of external tools like spring. Why do I need spring-security if there is a security built in Servlets spec? I can map any request to any servlet using web.xml, no struts.xml is needed. I can use servlet-filters instead of struts interceptors. There is RMI, so I do not need spring-remote. And so on.. Why should I bother my self with all that fancy stuff if there is J2EE? I really want to find situation when J2EE is not enough. Do you have any? Thanks!

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  • How to write an R function that evaluates an expression within a data-frame

    - by Prasad Chalasani
    Puzzle for the R cognoscenti: Say we have a data-frame: df <- data.frame( a = 1:5, b = 1:5 ) I know we can do things like with(df, a) to get a vector of results. But how do I write a function that takes an expression (such as a or a > 3) and does the same thing inside. I.e. I want to write a function fn that takes a data-frame and an expression as arguments and returns the result of evaluating the expression "within" the data-frame as an environment. Never mind that this sounds contrived (I could just use with as above), but this is just a simplified version of a more complex function I am writing. I tried several variants ( using eval, with, envir, substitute, local, etc) but none of them work. For example if I define fn like so: fn <- function(dat, expr) { eval(expr, envir = dat) } I get this error: > fn( df, a ) Error in eval(expr, envir = dat) : object 'a' not found Clearly I am missing something subtle about environments and evaluation. Is there a way to define such a function?

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  • Should I learn to code?

    - by saltcod
    Hi All, This is more of a philosophical question than a technical one, but I’d like some opinions on it, and I think that there are many others in my position that would benefit. My issue is that I don’t really have time to learn how to code. I know, I know… no one has time anymore, but please hear me out. Since learning to use Drupal about 2 years ago I’ve been involved with several projects wherein I’ve become the default quasi-developer, front-end designer, site manager, and system administrator. What I’ve found is that I can produce fairly nice, feature rich Drupal sites with the wealth of contrib. modules out there (Views, CCK, image handling, etc….). BUT! I can’t code. I know enough PHP to insert something into a block, or re-word a string, but that’s about it. I still don’t really even know how arrays work. My question Succinctly, my question is: Given the time that I have available for all of this stuff – in addition to a full-time job and regular life – am I better off trying to become more expert at the front-end stuff, or should I just learn PHP already? Pros 1. If a project doesn’t use Drupal, I’ll know enough PHP to be able to participate. 2. Learning PHP would help my Drupal development too 3. Learning PHP would make front-end theming easier 4. Learning PHP should give me that missing background in programming – and should allow me to learn other languages in the future Cons 1. At 28, I know I’m not too old to learn anything. But am I too old to become ‘good’? 2. Am I better off getting better and better at front-end UX work? 3. Am I better off farming out the PHP work? Suggestions from coders welcome! Thanks Terry

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  • Span with white-space style in IE (7) applied _past_ end of span

    - by WaldenL
    We've got an application where users can enter "notes" into a rich edit control (Telerik's RedEditor, but that doesn't matter here). We had a user enter notes from w/in Safari that had a <span></span> in the middle of the note, and that span had a style on it specifying white-space:pre The HTML of the note was in the form of: <div> This is a note <span class="Apple-tab-span" style="white-space: pre; "> </span> and here's more of the note. </div> Simple enough, the style should apply to the span, and the span had 4 spaces in it. There should have been 4 spaces in the resulting output. Here's the problem. IE seems to apply that white-space: pre; style not only to the span, but to the enclosing div! Therefore, this long line that should have wrapped since it's not in the span, now pushed the document out until the line fits on the page. What am I missing. I know IE has problems, but this doesn't seem right, even for IE. So, the question(s): 1) Am I correct that the white-space attribute should only have applied to the span? 2) Can this be resolved somehow? Remember, I'm not in control of the content being entered. And it's entered from a mac w/Safari and being viewed in IE. Edit: The doctype on the page in question is: <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">

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  • NHibernate / multiple sessions and nested objects

    - by bernhardrusch
    We are using NHibernate in a rich client application. It is a pretty open application (the user searches for a dataset or creates a new one, changes the data and saves the data set. We leave the session open, because sometimes we have to lazy load some properties of the object (nested object structure). This means one big problem if we leave the session open, the db (MySQL) closes the connection and we are not able to find this out and it throws an exception (socket communication error) when accessing the database (we are thinking about testing the db connection before accessing the object - but this is not really optimal neither, the other option would be to set back the timeout of the db connection , but this just doesn't seem to well). So - is it possible to reconnect the session to a new database connection ? Another problem is it possible to get an object from one session and then re-attach it to another session ? (I often hear that session.lock should work for this - but this doesn't work so well in our application - so I ended up getting a "fresh" object from the session and copy the data over manually - which is a little bit cumbersome) Any ideas for this ?

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  • lapply slower than for-loop when used for a BiomaRt query. Is that expected?

    - by ptocquin
    I would like to query a database using BiomaRt package. I have loci and want to retrieve some related information, let say description. I first try to use lapply but was surprise by the time needed for the task to be performed. I thus tried a more basic for-loop and get a faster result. Is that expected or is something wrong with my code or with my understanding of apply ? I read other posts dealing with *apply vs for-loop performance (Here, for example) and I was aware that improved performance should not be expected but I don't understand why performance here is actually lower. Here is a reproducible example. 1) Loading the library and selecting the database : library("biomaRt") athaliana <- useMart("plants_mart_14") athaliana <- useDataset("athaliana_eg_gene",mart=athaliana) 2) Querying the database : loci <- c("at1g01300", "at1g01800", "at1g01900", "at1g02335", "at1g02790", "at1g03220", "at1g03230", "at1g04040", "at1g04110", "at1g05240" ) I create a function for the use in lapply : foo <- function(loci) { getBM("description","tair_locus",loci,athaliana) } When I use this function on the first element : > system.time(foo(cwp_loci[1])) utilisateur système écoulé 0.020 0.004 1.599 When I use lapply to retrieve the data for all values : > system.time(lapply(loci, foo)) utilisateur système écoulé 0.220 0.000 16.376 I then created a new function, adding a for-loop : foo2 <- function(loci) { for (i in loci) { getBM("description","tair_locus",loci[i],athaliana) } } Here is the result : > system.time(foo2(loci)) utilisateur système écoulé 0.204 0.004 10.919 Of course, this will be applied to a big list of loci, so the best performing option is needed. I thank you for assistance. EDIT Following recommendation of @MartinMorgan Simply passing the vector loci to getBM greatly improves the query efficiency. Simpler is better. > system.time(lapply(loci, foo)) utilisateur système écoulé 0.236 0.024 110.512 > system.time(foo2(loci)) utilisateur système écoulé 0.208 0.040 116.099 > system.time(foo(loci)) utilisateur système écoulé 0.028 0.000 6.193

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  • Best (Java) book for understanding 'under the bonnet' for programming?

    - by Ben
    What would you say is the best book to buy to understand exactly how programming works under the hood in order to increase performance? I've coded in assembly at university, I studied computer architecture and I obviously did high level programming, but what I really dont understand is things like: -what is happening when I perform a cast -whats the difference in performance if I declare something global as opposed to local? -How does the memory layout for an ArrayList compare with a Vector or LinkedList? -Whats the overhead with pointers? -Are locks more efficient than using synchronized? -Would creating my own array using int[] be faster than using ArrayList -Advantages/disadvantages of declaring a variable volatile I have got a copy of Java Performance Tuning but it doesnt go down very low and it contains rather obvious things like suggesting a hashmap instead of using an ArrayList as you can map the keys to memory addresses etc. I want something a bit more Computer Sciencey, linking the programming language to what happens with the assembler/hardware. The reason im asking is that I have an interview coming up for a job in High Frequency Trading and everything has to be as efficient as possible, yet I cant remember every single possible efficiency saving so i'd just like to learn the fundamentals. Thanks in advance

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  • Where to place interactive objects in JavaScript?

    - by Chris
    I'm creating a web based application (i.e. JavaScript with jQuery and lots of SVG) where the user interacts with "objects" on the screen (think of DIVs that can be draged around, resized and connected by arraows - like a vector drawing programm or a graphical programming language). As each "object" contains individual information but is allways belonging to a "class" of elements it's obvious that this application should be programmed by using an OOP approach. But where do I store the "objects" best? Should I create a global structure ("registry") with all (JS native) objects and tell them "draw yourself on the DOM"? Or should I avoid such a structure and think of the (relevant) DOM nodes as my objects and attach the relevant data as .data() to them? The first approach is very MVC - but I guess the attachment of all the event handlers will be non trivial. The second approach will handle the events in a trivial way and it doesn't create a duplicate structure, but I guess the usual OO stuff (like methods) will be more complex. What do you recomend? I think the answer will be JavaScript and SVG specific as "usual" programming languages don't have such a highly organized output "canvas".

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