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  • Simultanious process mysteriously ending

    - by Matt
    I'm trying to run a large air quality model, written in FORTRAN, setup with bash scripts, and run in a work queue (slurm.) The first part of the modeling is to run an "entry" model, this runs with MPI in the work queue but only on one process. At one point in the logs, there's a mysterious FORTRAN STOP, and then later the model fails because something wasn't set up properly. This FORTRAN STOP isn't from the main process, which continues running. This is a huge model, but as far as I know there should not be any other processes running at the same time. It consistently fails at the exact same spot. (I can move it by adding debug, but the debug is in the main process) How can I determine what this process is? I've tried added a call to strace -feprocess $SHELL in the run script, but I'm new to this, so if it has offered any info, I haven't been able to use it yet. The is no trace output around the FORTRAN STOP. The whole process occurs so fast that I can't seem to observe it by using ps. Is there a way I can somehow monitor all the processes being initiated from the time the work queue starts? Or some other way I can figure out what is failing? This is running on CentOS 6.4, with Slurm, compiled with PGI 13.

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  • How Do I Properly Run OfflineIMAP in a Crontab

    - by alharaka
    Installed Fedora. # cat /etc/redhat_release | awk ' { print F "> " $0; print ""; }' Fedora release 14 (Laughlin) Installed offlineimap from yum, cuz I'm lazy these days. # yum info offlineimap | awk ' { print F "> " $0; print ""; }' Loaded plugins: langpacks, presto, refresh-packagekit Adding en_US to language list Installed Packages Name : offlineimap Arch : noarch Version : 6.2.0 Release : 2.fc14 Size : 611 k Repo : installed From repo : fedora Summary : Powerful IMAP/Maildir synchronization and reader support URL : http://software.complete.org/offlineimap/ License : GPLv2+ Description : OfflineIMAP is a tool to simplify your e-mail reading. With : OfflineIMAP, you can read the same mailbox from multiple : computers. You get a current copy of your messages on each : computer, and changes you make one place will be visible on all : other systems. For instance, you can delete a message on your home : computer, and it will appear deleted on your work computer as : well. OfflineIMAP is also useful if you want to use a mail reader : that does not have IMAP support, has poor IMAP support, or does : not provide disconnected operation. And, lo and behold, every time I run offlineimap and try to redirect output in a crontab, it does not work. Below is my .offlineimaprc. [general] ui = TTY.TTYUI accounts = Personal, Work maxsyncaccounts = 3 [Account Personal] localrepository = Local.Personal remoterepository = Remote.Personal [Account Work] localrepository = Local.Work remoterepository = Remote.Work [Repository Local.Personal] type = Maildir localfolders = ~/mail/gmail [Repository Local.Work] type = Maildir localfolders = ~/mail/companymail [Repository Remote.Personal] type = IMAP remotehost = imap.gmail.com remoteuser = [email protected] remotepass = password ssl = yes maxconnections = 4 # Otherwise "deleting" a message will just remove any labels and # retain the message in the All Mail folder. realdelete = no [Repository Remote.Work] type = IMAP remotehost = server.company.tld remoteuser = username remotepass = password ssl = yes maxconnections = 4 I have tried TTY.TTYUI, NonInteractive.Quiet and NonInteractive.Basic with different variations. With or without redirection, the crontab entries I try cause problems. $ crontab -l | awk ' { print F "> " $0; print ""; }' */5 * * * * offlineimap >> ~/mail/logs/offlineimap.log 2>&1 */5 * * * * offlineimap I always get the same damn error ERROR: No UIs were found usable!. What am I doing wrong!?

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  • Ubuntu 10.04 install - frozen at splash, no errors

    - by Andrew Bolster
    Has anyone else come across this? After about as much of a fresh install as i can muster without buying new drives, and after walking through the amd64 alternate install with ease, and after a little 'pre-splash' screen where the orange dots under the (very sexy) new ubuntu logo blink away, I'm left with a vista of purple hues and logo plonked in the middle, with the dots not going anywhere. I was at this same position last night at 3 in the morning, left it lying overnight, and nothing had changed, so I'm pretty sure its frozen, the virtual terminals are not accessible, ie, c+a+F1 etc does nothing, but when i go in and inspect /var/log/* in the recovery console by booting off the installation cd, no errors, no complaints, no problems. I'm at my wits end and am just about ready to try anything. If this was on SO I'd be bountying, but if anyone can help you'll just have to cope with my thanks! Additional Details on my blog and my first attempt at asking for help Update: I can reasonably say it is not a hardware fault, as a full install of 9.10 with dual screen nvidia xinemara indicate that nothing is wonky

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  • Why does my $LD_LIBRARY_PATH get unset when using screen with bash?

    - by UltraNurd
    This is related to http://superuser.com/questions/27376/why-does-my-ld-library-path-get-unset-launching-terminal, but a different set of symptoms. First, /usr/bin/screen is setuid as per the other question. Second, the default shell on this system is /bin/tcsh for various historical reasons, and we're not allowed to chsh to /bin/bash, so I typically run bash manually immediately after login. Third, I almost always use screen, but I want ctrl-a ctrl-c in screen to create a new bash "tab", so I always invoke bash first. That is: {~} $ echo $SHELL /bin/tcsh {~} $ bash [~] echo $SHELL /bin/bash [~] screen -U [~] ...and when reconnecting: {~} $ echo $SHELL /bin/tcsh {~} $ screen -dUr [~] echo $SHELL /bin/bash [~] However, my $LD_LIBRARY_PATH is there in tcsh, there in bash, but empty once I run screen; it is still present if I just run screen from tcsh, but then I get new tcsh "tabs" when I use ctrl-a ctrl-c in screen. Any ideas?

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  • Setup staging with multiple SVN

    - by Kapil Sharma
    We are a startup, setting new environments for product to be released soon. Planned server structure with planned release flow is as shown in below image It ideally have a local server (or Staging server, shown in green) in local office, without public IP address and Production Server (Red) at Amazon EC2. Both local and production server have there own SVN copy. Management here want to update production server with production SVN and without providing its access to developers (including freelancers/contract employees). So for developers, there is a Local SVN on local server. Another purpose of local SVN to keep a copy of code on local server, which is under our direct control. Although there are some technical concerns like how will code at local server will be updated from local SVN and commit on production SVN but bigger question is, is that structure correct? Major requirement remain don't provide production SVN access to developers. What are other possible options to achieve that? Another minor question, if suitable here, if above structure is correct, is it possible for a SVN checkout to get updated from one SVN (Local SVN) but commit to other (Production SVN)? If yes, How? edit An answer has been accepted but for bounty, I'm still looking for answer Is that structure correct? Its pros/Cons? Technical solution is already provided by accepted answer.

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  • Going to directory using bash variables doesn't work when directory names have spaces

    - by gsingh2011
    Let's say I want to store the following command in a variable cd "/cygdrive/c/Program Files/" So I do this dir="cd \"/cygdrive/c/Program Files/\"" That should store the command to navigate to the Program Files directory, so when I type $dir it takes me to that directory. To check that the quotations have been properly escaped, I type echo $dir which gives me cd "/cygdrive/c/Program Files/" So everything should be working fine. However, when I type, $dir I get bash: cd: "/cygdrive/c/Program: No such file or directory What am I doing wrong? I'm using Cygwin, but I assume this problem applies to bash in general.

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  • How to keep groups when pulling with git

    - by mimrock
    I have a staging site that is a working directory of a git repository. How to set up git to let a developer pull out a branch or release without changing the group of the modified files? An example. Let's say I have two developers, robin and david. They are both in git-users group, so initially they can both have write permissions on site.php. -rw-rw-r-- 1 robin git-users 46068 Nov 16 12:12 site.php drwxrwxr-x 8 robin git-users 4096 Nov 16 14:11 .git After robin-server1$ git pull origin master: -rw-rw-r-- 1 robin robin 46068 Nov 16 12:35 site.php drwxrwxr-x 8 robin git-users 4096 Nov 16 14:11 .git And david do not have write permissions on site.php, because the group changed from 'git-users' to 'robin'. From now on, david will get a permission denied, when he tries to pull to this repository.

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  • How to convert aspell dictionary to simple list of words?

    - by rafalmag
    I want to get list of all words from aspell dictionary. I downloaded aspell and aspell polish dictionary, then unziped it using: preunzip pl.cwl I got pl.wl: ... hippie hippies hippiesowski/bXxYc hippika/MNn hippis/NOqsT hippisiara/MnN hippiska/mMN hippisowski/bXxYc ... but they appear with sufix like /bXxYc or /MNn. These suffixes are defined in pl_affix.dat, which looks like ... SFX n Y 5 SFX n a 0 [^ij]a SFX n ja yj [^aeijoóuy]ja SFX n a 0 [aeijoóuy]ja SFX n ia ij [^drt]ia SFX n ia yj [drt]ia ... It is connected to the declination and conjugation. How can I add to the first list all forms (with all corresponding suffixes as defined in .dat file ) ? BTW: I need this list to spell-checker jazzy.

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  • How to configure mod_proxy_balancer to gracefully fail under high load

    - by bramp
    We have a system which has one Apache instance in front of multiple tomcats. These tomcats then connect to various databases. We balance the load to the tomcat with mod_proxy_balancer. Currently we are receiving 100 requests a second, the load on the Apache server is quite low, but due to database heavy operations on the tomcats, the load there is roughly 25% (of what I estimate they can handle). In a few weeks there is an event happening and we estimate that our requests will jump significant, maybe by a factor of 10. I'm doing everything I can do reduce the load on our tomcats, but I know we are going to run out of capacity, so I would like to fail gracefully. By this I mean, instead of trying to deal with too many connections which all timeout, I would like Apache to somehow monitor average response time, and as soon as the response time to Tomcat is getting above some threshold, I would like a error page displayed. This means that users who are lucky still get a page rendered quickly, and those who are unlucky get a error page quickly. Instead of everyone waiting far too long for their page, and eventually everyone timing out, and the database being swamped with queries which are never used. Hopefully this makes sense, so I was looking for suggestions on how I could achieve this. thanks

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  • PNP4Nagios creates infinite .perfdata files

    - by Kevin Maschke
    at our company we have installed a Icinga together with PNP4Nagios. We've got a rare problem with the perfdata files PNP4Nagios creates. Each couple of weeks, we notice that our icinga server stops working correctly because it runs out of inodes. I've been looking around, and I've noticed that the problem is here: /usr/local/pnp4nagios/var/spool Each couple of weeks, this folder contains over 300k perfdata files of this type: perfdata.1336058870 I think it must be a PNP4Nagios problem, because I think that normally each "X" time, PNP4Nagios should override existing perfdata files to NOT generate new ones. Do you have any idea on what I could change or what I must do to solve this problem? Thanks in advance.

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  • Problem with PXE boot

    - by user70523
    I followed the following link for PXE boot, http://www.howtoforge.com/setting-up-a-pxe-install-server-on-ubuntu-9.10-p3 and I was able to ping the client from the server and also when I booted up the client It is getting the IP address from the server. But later,I got this error PXELinux 3.82 2009-06-09 . . . [other informations] !PXE Entry point found (we hope) at 9D3B:0109 via plan A UNDI code segment at 9D3B len 16C2 UNDI data segment at 933B len A000 Getting cached packet 01 02 03 . . . [other informations] TFTP prefix: Trying to load: pxelinux.cfg/ec5db4c0-74fe-d511-b9e7-3d9235afe5a1 Trying to load: pxelinux.cfg/01-00-17-31-b6-5e-a8 Trying to load: pxelinux.cfg/0A64491E Trying to load: pxelinux.cfg/0A64491 Trying to load: pxelinux.cfg/0A6449 Trying to load: pxelinux.cfg/0A644 Trying to load: pxelinux.cfg/0A64 Trying to load: pxelinux.cfg/0A6 Trying to load: pxelinux.cfg/0A Trying to load: pxelinux.cfg/0 Trying to load: pxelinux.cfg/default Unable to locate configuration file Boot failed: press a key to retry or wait for reset I have put all the files mentioned in the link in tftpboot. Can anyone explain what could be the problem. Thanks in advance

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  • Filezilla connection error

    - by Kumar P
    I have RHEL 5 lan server with squid 2.6 stable proxy settings, Under this have some windows xp desktops Now i installed filezilla ftp client in windows xp, for give services to my client's websites But i can't connect ftp servers throw filezilla , I set generic proxy too. ( HTTP/1.1 USING CONNECT method ) I get error message like this, Status: Connecting to (ftp hostname) through proxy Status: Connecting to hostname:port... Status: Connection with proxy established, performing handshake... Response: Proxy reply: HTTP/1.0 403 Forbidden How can i solve this problem ?

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  • Apache strace to hunt down a memory leak

    - by Zipp
    We have a server with a memory issue: the server keeps allocating itself memory and doesn't release it. We're running Apache. I set MaxReqsPerClient to a really low value just so the threads don't hold a lot of memory, but has anyone seen calls like this? Am I wrong in thinking that it's probably Drupal pulling too much data back from the cache in DB? read(52, "h_index\";a:2:{s:6:\"weight\";i:1;s"..., 6171) = 1368 read(52, "\";a:2:{s:6:\"author\";a:3:{s:5:\"la"..., 4803) = 1368 read(52, ":\"description\";s:19:\"Term name t"..., 3435) = 1368 read(52, "abel\";s:4:\"Name\";s:11:\"descripti"..., 2067) = 1368 read(52, "ions\";a:2:{s:4:\"form\";a:3:{s:4:\""..., 16384) = 708 brk(0x2ab554396000) = 0x2ab5542f5000 mmap(NULL, 1048576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2ab55f653000 brk(0x2ab554356000) = 0x2ab5542f5000 mmap(NULL, 1048576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2ab55f753000 brk(0x2ab554356000) = 0x2ab5542f5000 mmap(NULL, 1048576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2ab55f853000 brk(0x2ab554356000) = 0x2ab5542f5000 mmap(NULL, 1048576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2ab55f953000 brk(0x2ab554356000) = 0x2ab5542f5000 mmap(NULL, 1048576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2ab55fa53000 brk(0x2ab554356000) = 0x2ab5542f5000 mmap(NULL, 1048576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2ab55fb53000 brk(0x2ab554356000) = 0x2ab5542f5000 mmap(NULL, 1048576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2ab55fc53000 poll([{fd=52, events=POLLIN|POLLPRI}], 1, 0) = 0 (Timeout) write(52, "d\0\0\0\3SELECT cid, data, created, "..., 104) = 104 read(52, "\1\0\0\1\5E\0\0\2\3def\23drupal_database_nam"..., 16384) = 1368 read(52, ";s:11:\"granularity\";a:5:{s:4:\"ye"..., 34783) = 1368 read(52, ":4:\"date\";}s:9:\"datestamp\";a:9:{"..., 33415) = 1368 read(52, "\";i:0;s:15:\"display_default\";i:0"..., 32047) = 1368 read(52, "e as an integer value.\";s:8:\"set"..., 30679) = 1368 read(52, "label' pairs, i.e. 'Fraction': 0"..., 29311) = 1368 top (the procs just keep growing in memory..): 12845 apache 15 0 581m 246m 37m S 0.0 4.1 0:17.39 httpd 12846 apache 15 0 571m 235m 37m S 0.0 4.0 0:12.13 httpd 12833 apache 15 0 420m 117m 37m S 0.0 2.0 0:06.04 httpd 12851 apache 15 0 412m 113m 37m S 0.0 1.9 0:05.32 httpd 13871 apache 15 0 409m 109m 37m S 0.0 1.8 0:04.90 httpd 12844 apache 15 0 407m 108m 37m S 0.0 1.8 0:04.50 httpd 13870 apache 15 0 407m 108m 37m S 0.3 1.8 0:03.50 httpd 14903 apache 15 0 402m 103m 37m S 0.3 1.7 0:01.29 httpd 14850 apache 15 0 397m 100m 37m S 0.0 1.7 0:02.08 httpd 14907 apache 15 0 390m 93m 36m S 0.0 1.6 0:01.32 httpd 13872 apache 15 0 386m 91m 37m S 0.0 1.5 0:03.13 httpd 12843 apache 15 0 373m 81m 37m S 0.0 1.4 0:02.51 httpd 14901 apache 15 0 370m 75m 33m S 0.0 1.3 0:00.78 httpd 14904 apache 15 0 335m 29m 15m S 0.0 0.5 0:00.26 httpd

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  • xinet vs iptables for port forwarding performance

    - by jamie.mccrindle
    I have a requirement to run a Java based web server on port 80. The options are: Web proxy (apache, nginx etc.) xinet iptables setuid The baseline would be running the app using setuid but I'd prefer not to for security reasons. Apache is too slow and nginx doesn't support keep-alives so new connections are made for every proxied request. xinet is easy to set up but creates a new process for every request which I've seen cause problems in a high performance environment. The last option is port forwarding with iptables but I have no experience of how fast it is. Of course, the ideal solution would be to do this on a dedicated hardware firewall / load balancer but that's not an option at present.

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  • Running git-svn with cron results in garbage in .git

    - by Paul
    I've setup a git-svn repo with cron to fetch from the svn repo daily. I have a script to do the fetching, and this is what is invoked by cron. Everything is fine with the repo, and the script works fine when executed manually. However, when it runs under cron, empty files get dropped into the .git directory. The files have names that look like they are some base64 output, e.g. juTrvjP6m8 and kcKf3hu3b4. Two of these files show up for every cron run. I thought these might be commit hashes, but they're not, git-show says it's an unknown revision. I set-up the repo as follows: git svn init http://svn.ip.addr/repo git svn fetch svn-remote My script looks like this: cd /gitsvn/dir git svn fetch svn-remote git svn push pub The last line pushes the repo to a separate (bare) public repo from which others can clone. I'm piping the output from the cron job to a file, which looks like this: fatal: unable to run 'git-svn' Counting objects: 21, done. Delta compression using up to 2 threads. Compressing objects: 100% (10/10), done. Writing objects: 100% (11/11), 59.08 KiB, done. Total 11 (delta 8), reused 0 (delta 0) To /gitpub/repo.git 360faf5..a153b0d trunk -> trunk The line "fatal: unable to run 'git-svn'" is alarming, but the fetch seems to go ahead anyway. Any suggestions? Where are these empty garbage files coming from, and how to stop them? Am I in for bigger problems in the future? BTW, I'm using git 1.6.3.3.

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  • cgconfig.conf : setting root control group parameters

    - by delerious010
    I've got cpu, cpuacct and memory cgroups configured via /etc/cgconfig.conf ( cgconfig-bin on Lucid ). I can add new control groups, and assign processes to them however there does not seem to be a facility for changing the paramters of the root level memory cgroup ( the actual mount point ). How would one best set such parameters in a clean manner withoput c For example, I've the memory cgroup mounted to /var/run/cgroup/memory. I'd like to have /var/run/cgroup/memory/memory.use_hierarchy set to 1 on boot.

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  • What useful things can one add to one's .bashrc ?

    - by gyaresu
    Is there anything that you can't live without and will make my life SO much easier? Here are some that I use ('diskspace' & 'folders' are particularly handy). # some more ls aliases alias ll='ls -alh' alias la='ls -A' alias l='ls -CFlh' alias woo='fortune' alias lsd="ls -alF | grep /$" # This is GOLD for finding out what is taking so much space on your drives! alias diskspace="du -S | sort -n -r |more" # Command line mplayer movie watching for the win. alias mp="mplayer -fs" # Show me the size (sorted) of only the folders in this directory alias folders="find . -maxdepth 1 -type d -print | xargs du -sk | sort -rn" # This will keep you sane when you're about to smash the keyboard again. alias frak="fortune" # This is where you put your hand rolled scripts (remember to chmod them) PATH="$HOME/bin:$PATH"

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  • Configure error when installing php

    - by Emenims
    When installing php I configure it like so: ./configure --prefix=/wwwroot/php --with-apxs2=/wwwroot/bin/apxs --with-configure-file-path=/wwwroot/php --with-mysql --with-gd And a configure error shows up saying this: xml2-config not found. Please check your libxml2 installation. What's this all about? And how settle the problem?

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  • Why should krfb use so much cpu when I never use it?

    - by Newton Falls
    I was playing around with KSysGuard and I noticed the process using the most cpu was krfb, which is the server process for desktop sharing. I never use desktop sharing so I suppose it is a default loaded process. Why would this process use so much juice (around 15%) when I never use it and it really shouldn't be doing much of anything? I don't see any network activity so I don't think I am being hacked. I have suspended the process and nothing bad seems to have happened. Can I assume this is a safe thing to do?

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  • Postfix tutorial inconsistency

    - by Desmond Hume
    I'm following this tutorial to setup a Postfix/Dovecot mail server with Postfix Admin as a web front end. As regards directory structure for virtual mail users, the author of the tutorial writes: Virtual mail users are those that do not exist as Unix system users. They thus don't use the standard Unix methods of authentication or mail delivery and don't have home directories. That is how we are managing things here: mail users are defined in the database created by Postfix Admin rather than existing as system users. Mail will be kept in subfolders per domain and account under /var/vmail - e.g. [email protected] will have a mail directory of /var/vmail/example.com/me. But when he gives instructions about configuring Postfix Admin, he suggests this to be contained by Postfix Admin's config.inc.php: // Mailboxes // If you want to store the mailboxes per domain set this to 'YES'. // Examples: // YES: /usr/local/virtual/domain.tld/[email protected] // NO: /usr/local/virtual/[email protected] $CONF['domain_path'] = 'NO'; Is there an inconsistency?

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  • Which mail clients can give reminders about unresponded emails?

    - by ulidtko
    In my daily e-mail often happens the following scenario: I send somebody an email which describes some problem and requests an action from the recipient. Typically, I wish to ensure that this action was taken, or at least somehow resolved; when this happens, the email recipient should notify me with a response email about what was done, and what was not and why. But, sometimes emails don't get read by the recipient, or he forgets to reply to me. At the same time, I cannot constantly keep in memory the list of all emails for which I was waiting an answer and still didn't receive it. So I wonder, is there in any email client such a feature which would allow me to somehow mark specific outgoing emails as "demanding reply"? The mail client could in this case notify me if any "demanding reply" emails still aren't replied for a long time.

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  • sysctl.conf not running on boot

    - by Brian
    At what point is sysctl.conf supposed to be read during boot, and why might it not be running? I have the following settings which are not being applied when I reboot: net.bridge.bridge-nf-call-arptables = 0 net.bridge.bridge-nf-call-ip6tables = 0 net.bridge.bridge-nf-call-iptables = 0 net.bridge.bridge-nf-filter-pppoe-tagged = 0 net.bridge.bridge-nf-filter-vlan-tagged = 0 fs.nfs.nlm_udpport = 32768 fs.nfs.nlm_tcpport = 32768 The first section is needed for KVM bridging, and the second is to run the NFS lock manager on a known port. However, after booting, these values have not taken effect. If I run sysctl -p, then they do. This wouldn't be a huge issue, except that I can't figure out how to restart the lock manager without rebooting. I would really like to know why sysctl.conf isn't working at boot, but I'd settle for just being able to restart the lock manager. This is on Ubuntu server 10.04.2, kernel 2.6.32-31-server. I know some daemons check the permissions on their config files and refuse to work if they're too permissive, but sysctl.conf is 644 root:root, which I'm pretty sure is the default.

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