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  • What is wrong here (will update): subset in geom_point does not work as expected

    - by Andreas
    I ask the following in the hope that someone might come up with a generic description about the problem.Basically I have no idea whats wrong with my code. When I run the code below, plot nr. 8 turns out wrong. Specifically the subset in geom_point does not work the way it should. If somebody can tell me what the problem is, I'll update this post. SOdata <- structure(list(id = 10:55, one = c(7L, 8L, 7L, NA, 7L, 8L, 5L, 7L, 7L, 8L, NA, 10L, 8L, NA, NA, NA, NA, 6L, 5L, 6L, 8L, 4L, 7L, 6L, 9L, 7L, 5L, 6L, 7L, 6L, 5L, 8L, 8L, 7L, 7L, 6L, 6L, 8L, 6L, 8L, 8L, 7L, 7L, 5L, 5L, 8L), two = c(7L, NA, 8L, NA, 10L, 10L, 8L, 9L, 4L, 10L, NA, 10L, 9L, NA, NA, NA, NA, 7L, 8L, 9L, 10L, 9L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 8L, 8L, 8L, 10L, 9L, 10L, 8L, 9L, 10L, 8L, 8L, 7L, 10L, 8L, 9L, 7L, 9L), three = c(7L, 10L, 7L, NA, 10L, 10L, NA, 10L, NA, NA, NA, NA, 10L, NA, NA, 4L, NA, 7L, 7L, 4L, 10L, 10L, 7L, 4L, 7L, NA, 10L, 4L, 7L, 7L, 7L, 10L, 10L, 7L, 10L, 4L, 10L, 10L, 10L, 4L, 10L, 10L, 10L, 10L, 7L, 10L), four = c(7L, 10L, 4L, NA, 10L, 7L, NA, 7L, NA, NA, NA, NA, 10L, NA, NA, 4L, NA, 10L, 10L, 7L, 10L, 10L, 7L, 7L, 7L, NA, 10L, 7L, 4L, 10L, 4L, 7L, 10L, 2L, 10L, 4L, 12L, 4L, 7L, 10L, 10L, 12L, 12L, 4L, 7L, 10L), five = c(7L, NA, 6L, NA, 8L, 8L, 7L, NA, 9L, NA, NA, NA, 9L, NA, NA, NA, NA, 7L, 8L, NA, NA, 7L, 7L, 4L, NA, NA, NA, NA, 5L, 6L, 5L, 7L, 7L, 6L, 9L, NA, 10L, 7L, 8L, 5L, 7L, 10L, 7L, 4L, 5L, 10L), six = structure(c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), .Label = c("2010-05-25", "2010-05-27", "2010-06-07"), class = "factor"), seven = c(0.777777777777778, 0.833333333333333, 0.333333333333333, 0.888888888888889, 0.5, 0.888888888888889, 0.777777777777778, 0.722222222222222, 0.277777777777778, 0.611111111111111, 0.722222222222222, 1, 0.888888888888889, 0.722222222222222, 0.555555555555556, NA, 0, 0.666666666666667, 0.666666666666667, 0.833333333333333, 0.833333333333333, 0.833333333333333, 0.833333333333333, 0.722222222222222, 0.833333333333333, 0.888888888888889, 0.666666666666667, 1, 0.777777777777778, 0.722222222222222, 0.5, 0.833333333333333, 0.722222222222222, 0.388888888888889, 0.722222222222222, 1, 0.611111111111111, 0.777777777777778, 0.722222222222222, 0.944444444444444, 0.555555555555556, 0.666666666666667, 0.722222222222222, 0.444444444444444, 0.333333333333333, 0.777777777777778), eight = c(0.666666666666667, 0.333333333333333, 0.833333333333333, 0.666666666666667, 1, 1, 0.833333333333333, 0.166666666666667, 0.833333333333333, 0.833333333333333, 1, 1, 0.666666666666667, 0.666666666666667, 0.333333333333333, 0.5, 0, 0.666666666666667, 0.5, 1, 0.666666666666667, 0.5, 0.666666666666667, 0.666666666666667, 0.666666666666667, 0.333333333333333, 0.333333333333333, 1, 0.666666666666667, 0.833333333333333, 0.666666666666667, 0.666666666666667, 0.5, 0, 0.833333333333333, 1, 0.666666666666667, 0.5, 0.666666666666667, 0.666666666666667, 0.5, 1, 0.833333333333333, 0.666666666666667, 0.833333333333333, 0.666666666666667), nine = c(0.307692307692308, NA, 0.461538461538462, 0.538461538461538, 1, 0.769230769230769, 0.538461538461538, 0.692307692307692, 0, 0.153846153846154, 0.769230769230769, NA, 0.461538461538462, NA, NA, NA, NA, 0, 0.615384615384615, 0.615384615384615, 0.769230769230769, 0.384615384615385, 0.846153846153846, 0.923076923076923, 0.615384615384615, 0.692307692307692, 0.0769230769230769, 0.846153846153846, 0.384615384615385, 0.384615384615385, 0.461538461538462, 0.384615384615385, 0.461538461538462, NA, 0.923076923076923, 0.692307692307692, 0.615384615384615, 0.615384615384615, 0.769230769230769, 0.0769230769230769, 0.230769230769231, 0.692307692307692, 0.769230769230769, 0.230769230769231, 0.769230769230769, 0.615384615384615), ten = c(0.875, 0.625, 0.375, 0.75, 0.75, 0.75, 0.625, 0.875, 1, 0.125, 1, NA, 0.625, 0.75, 0.75, 0.375, NA, 0.625, 0.5, 0.75, 0.875, 0.625, 0.875, 0.75, 0.625, 0.875, 0.5, 0.75, 0, 0.5, 0.875, 1, 0.75, 0.125, 0.5, 0.5, 0.5, 0.625, 0.375, 0.625, 0.625, 0.75, 0.875, 0.375, 0, 0.875), elleven = c(1, 0.8, 0.7, 0.9, 0, 1, 0.9, 0.5, 0, 0.8, 0.8, NA, 0.8, NA, NA, 0.8, NA, 0.4, 0.8, 0.5, 1, 0.4, 0.5, 0.9, 0.8, 1, 0.8, 0.5, 0.3, 0.9, 0.2, 1, 0.8, 0.1, 1, 0.8, 0.5, 0.2, 0.7, 0.8, 1, 0.9, 0.6, 0.8, 0.2, 1), twelve = c(0.666666666666667, NA, 0.133333333333333, 1, 1, 0.8, 0.4, 0.733333333333333, NA, 0.933333333333333, NA, NA, 0.6, 0.533333333333333, NA, 0.533333333333333, NA, 0, 0.6, 0.533333333333333, 0.733333333333333, 0.6, 0.733333333333333, 0.666666666666667, 0.533333333333333, 0.733333333333333, 0.466666666666667, 0.733333333333333, 1, 0.733333333333333, 0.666666666666667, 0.533333333333333, NA, 0.533333333333333, 0.6, 0.866666666666667, 0.466666666666667, 0.533333333333333, 0.333333333333333, 0.6, 0.6, 0.866666666666667, 0.666666666666667, 0.6, 0.6, 0.533333333333333)), .Names = c("id", "one", "two", "three", "four", "five", "six", "seven", "eight", "nine", "ten", "elleven", "twelve"), class = "data.frame", row.names = c(NA, -46L)) iqr <- function(x, ...) { qs <- quantile(as.numeric(x), c(0.25, 0.5, 0.75), na.rm = T) names(qs) <- c("ymin", "y", "ymax") qs } magic <- function(y, ...) { high <- median(SOdata[[y]], na.rm=T)+1.5*sd(SOdata[[y]],na.rm=T) low <- median(SOdata[[y]], na.rm=T)-1.5*sd(SOdata[[y]],na.rm=T) ggplot(SOdata, aes_string(x="six", y=y))+ stat_summary(fun.data="iqr", geom="crossbar", fill="grey", alpha=0.3)+ geom_point(data = SOdata[SOdata[[y]] > high,], position=position_jitter(w=0.1, h=0),col="green", alpha=0.5)+ geom_point(data = SOdata[SOdata[[y]] < low,], position=position_jitter(w=0.1, h=0),col="red", alpha=0.5)+ stat_summary(fun.y=median, geom="point",shape=18 ,size=4, col="orange") } for (i in names(SOdata)[-c(1,7)]) { p<- magic(i) ggsave(paste("magig_plot_",i,".png",sep=""), plot=p, height=3.5, width=5.5) }

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  • Why do i get a circular reference exception when calling to_json on an ActiveRecord::Relation

    - by midas06
    In Rails 3 (beta 3 on 1.8.7), when calling to_json on a relation i get a circular reference exception. Converting that relation to an array first, and THEN calling to_json works. Code That fails: Model.where().to_json (Where model is any model in your Rails 3 app) Code that works: Model.where().to_a.to_json This can be reproed on the console. Has anyone else run in to this? Is this expected?

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  • how to fix my error saying expected expression before 'else'

    - by user292489
    this program intended to read a .txt, a set of numbers, file and wwrite to another two .txt files called even amd odd as follows: #include <stdio.h> #include <stdlib.h> int main(int argc, char *argv[]) { int i=0,even,odd; int number[i]; // check to make sure that all the file names are entered if (argc != 3) { printf("Usage: executable in_file output_file\n"); exit(0); } FILE *dog = fopen(argv[1], "r"); FILE *feven= fopen(argv[2], "w"); FILE *fodd= fopen (argv[3], "w"); // check whether the file has been opened successfully if (dog == NULL) { printf("File %s cannot open!\n", argv[1]); exit(0); } //odd = fopen(argv[2], "w"); { if (i%2!=1) i++;} fprintf(feven, "%d", even); fscanf(dog, "%d", &number[i]); else { i%2==1; i++;} fprintf(fodd, "%d", odd); fscanf(dog, "%d", &number[i]); fclose(feven); fclose(fodd);

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  • Bad_alloc exception when using new for a struct c++

    - by bsg
    Hi, I am writing a query processor which allocates large amounts of memory and tries to find matching documents. Whenever I find a match, I create a structure to hold two variables describing the document and add it to a priority queue. Since there is no way of knowing how many times I will do this, I tried creating my structs dynamically using new. When I pop a struct off the priority queue, the queue (STL priority queue implementation) is supposed to call the object's destructor. My struct code has no destructor, so I assume a default destructor is called in that case. However, the very first time that I try to create a DOC struct, I get the following error: Unhandled exception at 0x7c812afb in QueryProcessor.exe: Microsoft C++ exception: std::bad_alloc at memory location 0x0012f5dc.. I don't understand what's happening - have I used up so much memory that the heap is full? It doesn't seem likely. And it's not as if I've even used that pointer before. So: first of all, what am I doing that's causing the error, and secondly, will the following code work more than once? Do I need to have a separate pointer for each struct created, or can I re-use the same temporary pointer and assume that the queue will keep a pointer to each struct? Here is my code: struct DOC{ int docid; double rank; public: DOC() { docid = 0; rank = 0.0; } DOC(int num, double ranking) { docid = num; rank = ranking; } bool operator>( const DOC & d ) const { return rank > d.rank; } bool operator<( const DOC & d ) const { return rank < d.rank; } }; //a lot of processing goes on here; when a matching document is found, I do this: rank = calculateRanking(table, num); //if the heap is not full, create a DOC struct with the docid and rank and add it to the heap if(q.size() < 20) { doc = new DOC(num, rank); q.push(*doc); doc = NULL; } //if the heap is full, but the new rank is greater than the //smallest element in the min heap, remove the current smallest element //and add the new one to the heap else if(rank > q.top().rank) { q.pop(); cout << "pushing doc on to queue" << endl; doc = new DOC(num, rank); q.push(*doc); } Thank you very much, bsg.

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  • Thread runs only once

    - by folone
    When a Thread is finished, you cannot run it once more, using start() method: it throws an Exception. Could anyone explain, why? What stands behind such an architectural decision?

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  • XQuery fn:replace not behaving as expected

    - by CoolGravatar
    I have an Excel worksheet in XML format which contains <Cell ss:StyleID="s127"><Data ss:Type="String">A01-Replace</Data></Cell> I want to replace @A01-Replace with a different string. I'm using the XQuery's replace function like so: let $excel := doc("excel.xml") let $test := "another string" return replace($excel, "(A[0-9]+-Replace)", $test) Before calling replace, the variable $excel is valid XML upon output. However, when I output $excel after I call the replace function, all of the XML tags have been stripped, and $excel is a string with the content of the cells as its values. I would like to keep the XML tags there. Any ideas?

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  • Problems finding classes in namespace and testing extend expected parent

    - by Matt
    So I am in the process of building a site in ASP.Net MVC, and in the process I am adding certain things to my Site.Master I want to make sure that all of my model classes extend a certain base class that contains all of the pieces the Site.Master needs to be operable. I want to test to make sure this assumption isn't broken (I believe this will save me time when I forget about it and can't figure out why a new combination isn't working.) I wrote a test that I thought would help with this, but I am running into two problems. First it isn't finding the one example model class I have so far in the LINQ call all of a sudden, I am admittedly still a bit new to LINQ. Second, I had it finding the class earlier, but I couldn't get it to verify that the class inherits from the base class. Here is the example test. [Test] public void AllModelClassesExtendAbstractViewModel() { var abstractViewModelType = typeof (AbstractViewModel); Assembly baseAssembly = Assembly.GetAssembly(abstractViewModelType); var modelTypes = baseAssembly.GetTypes() .Where(assemblyType => (assemblyType.Namespace.EndsWith("Models") && assemblyType.Name != "AbstractViewModel")) .Select(assemblyType => assemblyType); foreach (var modelType in modelTypes) { Assert.That(modelType.IsSubclassOf(abstractViewModelType), Is.True , modelType.Name + " does not extend AbstractViewModel"); } }

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  • MessageBroker.getMessageBroker(null) getting null pointer Exception

    - by Shital
    I am creating Dynamic Destinations MessageBroker broker = MessageBroker.getMessageBroker(null); MessageService service = (MessageService) broker.getService("message-service"); MessageDestination destination = (MessageDestination) service.createDestination("Group1"); if (service.isStarted()) { destination.start(); } But I am getting Null Pointer Exception MessageBroker broker = MessageBroker.getMessageBroker(null); Can Anyone Help Me

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  • Jquery .Show() .Hide() not working as expected

    - by fizgig07
    I'm trying to use the show and hide to display a different set of select options when a certain report type is selected. I have a couple problems with this: The .show .hide only execute properly if I pass params, slow fast, in the the first result of my conditional statement. If I take out the params or pass params in both results, only one select shows and it never changes.. here's is the code that currently kind of works. if ($('#ReportType').val() == 'PbuseExport') { $('#PbuseServices').show('fast'); $('#ReportServiceDropdown').hide('fast'); } else { $('#PbuseServices').hide(); $('#ReportServiceDropdown').show(); } After i've used this control I am taken to a differnt page. When I use the control again, it reatins the original search values and repopulates the control. Then again I only want to show one select option if a certain report is chosen.. This works correctly if the report type I originally searched on is not the "PbuseExport". If I searched on the report type "PbuseExport", then both selects show on the screen, and only until I change the report type does it show only one select. I know this probably isn't very clear.. Here is the code that handles the change event on the report type drop down. var serviceValue = $("#ReportType").val(); switch (serviceValue) { case 'PbuseExport': $('#PbuseServices').show('fast'); $('#ReportServiceDropdown').hide('fast'); default: $('#PbuseServices').hide(); $('#ReportServiceDropdown').show(); break; }

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  • f# interactive System.OutOfMemoryException

    - by user343550
    f# interactive throws System.OutOfMemoryException when loading large objects into memory. Exception is thrown at approximately 1.3 gigs. Data set is 2.2 gigs, and loads fine in debugger mode. Using VS2008 with April 2010 CTP This is mostly a java library that is being used via ikvmc, but if that were an issue, it shouldn't be running in the debugger either.

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  • converting string to valid datetime

    - by Ranjana
    strdate=15/06/2010 DateTime dt = DateTime.Parse(strdate, System.Threading.Thread.CurrentThread.CurrentCulture.DateTimeFormat); i cannot able to get the datetime value as dd/mm/yyyy. it is giving exception 'string is not recognized as a valid datetime' oly if it is in 06/15/2010 it is working. how to get the same format in dt.

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  • Why is log4j not behaving as expected?

    - by Kieveli
    I have a co-worker who is trying to get log4j to behave as follows: Log to Stdout By default, disable most output Show only messages from java.sql.PrepareStatement at level debug and up He's getting caught up in the 'level' vs 'priority'. Here is his config file: <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE log4j:configuration SYSTEM "D:/Java/apache-log4j-1.2.15/src/main/resources/org/apache/log4j/xml/log4j.dtd" > <log4j:configuration> <!-- Appenders --> <appender name="stdout" class="org.apache.log4j.ConsoleAppender"> <layout class="org.apache.log4j.PatternLayout"> <param name="ConversionPattern" value="%5p %d{ISO8601} [%t][%x] %c - %m%n" /> </layout> </appender> <!-- Loggers for ibatus and JDBC database --> <logger name="java.sql.PreparedStatement"> <level value="debug"/> </logger> <!-- The Root Logger --> <root> <level value="error"/> <appender-ref ref="stdout"/> </root> </log4j:configuration> The output from this shows no messages in the log output. How does he need to change his log4j.xml config file to make it behave as he's expecting?

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  • `return value' from Constructor Exception in Java?

    - by Lajos Nagy
    Take a look that the following code snippet: A a = null try { a = new A(); } finally { a.foo(); // What happens at this point? } Suppose A's constructor throws a runtime exception. At the marked line, am I always guaranteed to get a NullPointerException, or foo() will get invoked on a half constructed instance?

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  • Silverlight DataGrid Exception Reordering Column Headers

    - by Mike
    I'm trying to set the initial display order of the column headers in a silverlight datagrid by changing the column header DisplayIndex values. If I try to set the column order at page load time, I get an out of range exception. If I set the column order (same routine) at a later time like, in a button click handler, it works. Is this just a bug in the silverlight datagrid control? Suggestions for a possible work around?

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  • imagecopyresampled to resize and crop an image - not returning the expected result

    - by David
    imagecopyresized ( resource $dst_image , resource $src_image , int $dst_x , int $dst_y , int $src_x , int $src_y , int $dst_w , int $dst_h , int $src_w , int $src_h ) This is what I want to do: I have an image that's 600x1000px in size, and I want to create a thumb that's 100x100px after resizing that image to 300x500px, the x coordinate for the top left point of the thumb square should be at 100(src x) and 120(src y). According to what I understand from the manual, the command should be $dst_image = imagecreatetruecolor(100,100); $src_image = imagecreatefromjpeg('/home/sandbox/imagetoresize.jpg'); imagecopyresized ($dst_image, $src_image, 0, 0, 100, 120, **300 , 500 , 600 , 1000** ) It is cropping the image just fine, but it isn't resizing it correctly. I never got it to match what I see in my image editor (the GIMP). What am I doing wrong? I confirmed that all the numbers are correct, but it's always shifted up or down no matter what I do. Your help would really be appreciated!

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  • Sort command not working as expected

    - by user964689
    If anybody can help me to write a loop to iterate over files in a folder it would save me a huge amount of time. I think it must be quite a simple solution ,but I currently don't know how to nest a loop within a loop. So far I have this script: cd /folderlocation/ for i in `</textfile_containing_lines_to_iterate_through` do #size=`echo $i | perl -nE '/:([\d-]+)/ && say abs(eval $1)'` #echo "$size" zcat dataset | head -n 18 > temp"$i".vcf tabix dataset $i >> temp"$i".vcf vcftools --window-pi 1000000 --vcf temp10individuals"$i".vcf >> run_summary.txt cat out.windowed.pi >> outputfile_2 #rm temp* done grep -v "PI" outputfile_2 > outputfile rm outputfile_2 I need to expand this so that the script will run multiple times, through all of the 'textfiles_containing_lines_to_iterate_through'. Currently I change the name of the textfile manually each time and re-run the script. So I'd need a loop that does this for file in folder, and also that uses the name of the file as part of the outputfile name so that I can match an output file to an inputfile. Any help would be really useful and greatly appreciated! Many thanks in advance.

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  • VS2010 throws exception while opening project

    - by Prashant
    When I try opening a project I get an exception saying Web application is configured to use IIS. Error : The Web Application Project EntityServices is configured to use IIS. To access local IIS Web sites, you must install the following IIS components: IIS 6 Metabase and IIS 6 Configuration Compatibility In addition, you must run Visual Studio in the context of an administrator account. NOTE - I have already installed IIS 7. My box is a x64 bit Windows 7 box.

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  • Django "Page not found" error page shows only one of two expected urls

    - by Frank V
    I'm working with Django, admittedly for the first time doing anything real. The URL config looks like the following: urlpatterns = patterns('my_site.core_prototype.views', (r'^newpost/$', 'newPost'), (r'^$', 'NewPostAndDisplayList'), # capture nothing... #more here... - perhaps the perma-links? ) This is in an app's url.py which is loaded from the project's url.py via: urlpatterns = patterns('', # only app for now. (r'^$', include('my_site.core_prototype.urls')), ) The problem is, when I receive a 404 attempting to utilize newpost, the error page only shows the ^$ -- it seems to ignore the newpost pattern... I'm sure the solution is probably stupid-simple but right now I'm missing it. Can someone help get me on the right track...

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  • Python RegExp exception

    - by Jasie
    How do I split on all nonalphanumeric characters, EXCEPT the apostrophe? re.split('\W+',text) works, but will also split on apostrophes. How do I add an exception to this rule? Thanks!

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  • Exception throwing

    - by Ben Aston
    In C#, will the folloing code throw e containing the additional information up the call stack? ... catch(Exception e) { e.Data.Add("Additional information","blah blah"); throw; }

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  • Uncaught exception 'Zend_Controller_Dispatcher_Exception'

    - by saurabh
    Hi I am getting the following error on running zendframework . Fatal error: Uncaught exception 'Zend_Controller_Dispatcher_Exception' with message 'Invalid controller specified (error)' in F:\wamp\www\helloworld\library\Zend\Controller\Dispatcher\Standard.php:245 Stack trace: #0 F:\wamp\www\helloworld\library\Zend\Controller\Front.php(946): Zend_Controller_Dispatcher_Standard-dispatch(Object(Zend_Controller_Request_Http), Object(Zend_Controller_Response_Http)) #1 F:\wamp\www\helloworld\library\Zend\Controller\Front.php(212): Zend_Controller_Front-dispatch() #2 F:\wamp\www\helloworld\web_root\index.php(10): Zend_Controller_Front::run('../application/...') #3 {main} thrown in F:\wamp\www\helloworld\library\Zend\Controller\Dispatcher\Standard.php on line 245 please help me out.

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