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  • Tissue Specific Electrochemical Fingerprinting on the NetBeans Platform

    - by Geertjan
    Proteomics and metalloproteomics are rapidly developing interdisciplinary fields providing enormous amounts of data to be classified, evaluated, and interpreted. Approaches offered by bioinformatics and also by biostatistical data analysis and treatment are therefore becoming increasingly relevant. A bioinformatics tool has been developed at universities in Prague and Brno, in the Czech Republic, for analysis and visualization in this domain, on the NetBeans Platform: More info:  http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0049654

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  • Reduced Tree View in NetBeans IDE 7.2

    - by Geertjan
    Right-click within the Projects window in NetBeans IDE 7.2 and from the "View Java Packages As" menu, you can now choose "Reduced Tree".I never really understood the difference between "Reduced Tree" and the already existing "Tree". But it makes sense when you see it. Here's Reduced Tree view: And here's Tree view, where you can see that the "actions" and "nodes" packages above each have their own top level package nodes, which takes up more space than the above: What's cool is that your selected package view is persisted across restarts of the IDE. To be complete, here's the List view, which is the third option you have in the "View Java Packages As" menu: Seems to me like the new Reduced Tree view combines the best of the Tree view with the best of the List view! Related issue: http://netbeans.org/bugzilla/show_bug.cgi?id=53192

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  • Maven Command Line for NetBeans RCP Developers

    - by Geertjan
    In the ongoing work being done on Maven documentation support for NetBeans Platform developers, the tutorial describing how to use the Maven command line to set up and develop applications on the NetBeans Platform has ben updated: http://platform.netbeans.org/tutorials/nbm-maven-commandline.html An interesting next step after following the tutorial above is to... open the result into the free community edition of IntelliJ IDEA: It's not hard to register the JDK and Maven in IntelliJ IDEA and to then run your application directly from there. The point is that there's no requirement to use NetBeans IDE if you want to create applications on top of its framework.

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  • I have a performance problem

    - by Alan
    (copied from my wordpress blog). So start 95% of the performance calls that I receive. They usually continue something like: I have gathered some *stat data for you (eg the guds tool from Document 1285485.1), can you please root cause our problem? So, do you think you could? Neither can I, based on this my answer inevitably has to be "No". Given this kind of problem statement, I have no idea about the expectations, the boundary conditions, or even the application. The answer may as well be "Performance problems? Consult your local Doctor for Viagra". It's really not a lot to go on. So, What kind of problem description is going to allow me to start work on the issue that is being seen? I don't doubt that there really is an issue, it just needs to be pinned down somewhat. What behavior exactly are you expecting to see? Be specific and use business metrics. For example "run-time", "response-time" and "throughput". This helps us define exit criterea. Now, let's look at the system that is having problems. How is what you are seeing different? Use the same type of metrics. The answers to these two questions take us a long way towards being able to work a call. Even more helpful are answers to questions like Has this system ever worked to expectation? If so, when did it start exhibiting this behavior? Is the problem always present, or does it sometimes work to expectation? If it sometimes works to expectation, when are you seeing the problem? Is there any discernible pattern? Is the impact of the problem getting better, worse, or remaining constant? What kind of differences are there between when the system was performing to expectation and when it is not? Are there other machines where we could expect to see the same issue (eg similar usage and load), but are not? Again, differences? Once we start to gather information like this we start to build up a much clearer picture of exactly what we need to investigate, and what we need to achieve so that both you and me agree that the problem has been solved. Please help get that figure of poorly defined problem statements down from it's current 95% value.

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  • Solaris 11 VNC Server is "blurry" or "smeared"

    - by user12620111
    I've been annoyed by quality of the image that is displayed by my VNC viewer when I visit a Solaris 11 VNC server. How should I describe the image? Blurry? Grainy? Smeared? Low resolution? Compressed? Badly encoded? This is what I have gotten used to seeing on Solaris 11: This is not a problem for me when I view Solaris 10 VNC servers. I've finally taken the time to investigate, and the solution is simple. On the VNC client, don't allow "Tight" encoding. My VNC Viewer will negotiate to Tight encoding if it is available. When negotiating with the Solaris 10 VNC server, Tight is not a supported option, so the Solaris 10 server and my client will agree on ZRLE.  Now that I have disabled Tight encoding on my VNC client, the Solaris 11 VNC Servers looks much better: How should I describe the display when my VNC client is forced to negotiate to ZRLE encoding with the Solaris 11 VNC Server? Crisp? Clear? Higher resolution? Using a lossless compression algorithm? When I'm on a low bandwidth connection, I may re-enable Tight compression on my laptop. In the mean time, the ZRLE compression is sufficient for a coast-to-coast desktop, through the corporate firewall, encoded with VPN, through my ISP and onto my laptop. YMMV.

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  • enable iptables firewall on linux

    - by user13278061
     Here is a very basic set of instruction to setup a simple iptables firewall configuration on linux (redhat) Enable firewall log as root thenenter the following command, it launch a text gui #> setup first screen: Choose firewall configuration second screen: choose "Enabled" then "Customize" third screen: select you interface in "Trusted Devices", select "Allow Incoming" for "SSH" "Telnet" "FTP" (add eventually other ports, then press "OK" (2 times, then "Quit") At that point the firewall is enabled. You can start/stop/monitor using service iptables start/stop/status Change timeout to changed the tcp established connection timeout #> echo 120 >    /proc/sys/net/ipv4/netfilter/ip_conntrack_tcp_timeout_established Monitor connection in iptables tables for example if you want to track a connection establish from a host  152.68.65.207 #> cat /proc/net/ip_conntrack |grep 152.68.65.207

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  • Gesture Based NetBeans Tip Infrastructure

    - by Geertjan
    All/most/many gestures you make in NetBeans IDE are recorded in an XML file in your user directory, "var/log/uigestures", which is what makes the Key Promoter I outlined yesterday possible. The idea behind it is for analysis to be made possible, when you periodically pass the gestures data back to the NetBeans team. See http://statistics.netbeans.org for details. Since the gestures in the 'uigestures' file are identifiable by distinct loggers and other parameters, there's no end to the interesting things that one is able to do with it. While the NetBeans team can see which gestures are done most frequently, e.g., which kinds of projects are created most often, thus helping in prioritizing new features and bugs, etc, you as the user can, depending on who and how the initiative is taken, directly benefit from your collected data, too. Tim Boudreau, in a recent article, mentioned the usefulness of hippie completion. So, imagine that whenever you use code completion, a tip were to appear reminding you about hippie completion. And then you'd be able to choose whether you'd like to see the tip again or not, etc, i.e., customize the frequency of tips and the types of tips you'd like to be shown. And then, it could be taken a step further. The tip plugin could be set up in such a way that anyone would be able to register new tips per gesture. For example, maybe you have something very interesting to share about code completion in NetBeans. So, you'd create your own plugin in which there'd be an HTML file containing the text you'd like to have displayed whenever you (or your team members, or your students, maybe?) use code completion. Then you'd register that HTML file in plugin's layer file, in a subfolder dedicated to the specific gesture that you're interested in commenting on. The same is true, not just for NetBeans IDE, but for anyone creating their applications on top of the NetBeans Platform, of course.

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  • *raine Trip Report (Lorraine & Ukraine)

    - by delabassee
    Last week, I had the opportunity to talk about Java EE 7 in Nancy (Lorrraine - France) and Kiev (Ukraine). The first event was arranged by the local Lorraine JUG while the second one was a largest conference organised by the Ukraine Java User Group. Based on the overall feedback and discussions I had during those two events, it is clear that the WebSocket API (JSR 356) is really a hot topic. And travel issues aside, I have really enjoyed my time during those two events. Thanks to both JUGs for having me! A more detailed report can be found on my personal blog.

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  • JSR 348, 355, and 358: Moving JCP Forward

    - by arungupta
    The three-step JCP evolution consists of the following JSRs: • JSR 348, JCP transparency • JSR 355, Merging the two existing Executive Committees • JSR 358, complex issues moved postponed from JSR 348 The JSR 348 is already completed and JSR 355 is scheduled to be complete later this year. JSR 358 was recently filed and plans to revise several items such as modify the JSPA, Process Document, and a large number of complex issues. Because of the nature and scope of work, the Expert Group consists of representatives from all companies in the Executive Committee. Following the process set by JSR 348, all the work is done in open at jsr358.java.net. All the email discussions are here and JIRA here. Read Patrick Curran's blog for more details as well. The JSR review ballot ends on Jul 9th however the work has already happening for the past few months. Now is your chance to contribute and make JCP more effective!

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  • Focus on Backup

    - by Bertrand Matthelié
    @font-face { font-family: "Arial"; }@font-face { font-family: "Cambria"; }p.MsoNormal, li.MsoNormal, div.MsoNormal { margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: "Times New Roman"; }a:link, span.MsoHyperlink { color: blue; text-decoration: underline; }a:visited, span.MsoHyperlinkFollowed { color: purple; text-decoration: underline; }div.Section1 { page: Section1; } In the latest episode of our “Meet The MySQL Experts” podcast, Sveta Smirnova from the MySQL technical support organization gives us an overview of the common MySQL backup practices and tools, and talks about the benefits of using MySQL Enterprise Backup. Enjoy the podcast!

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  • Enterprise 2.0 - How to

    - by me
    Today I had a very interesting lecture at the  Fachhochschule Nordostschweiz "Hochschule für Wirtschaft" around How to design & implement an Enterprise 2. 0 solution. We had a great (and sometime pretty skeptical)  discussion around Social Value Models. The presentation can be found below. Enterprise 2.0 - How to View more presentations from Peter Reiser Feedback are always welcome.

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  • Warning and error information in stored procedures revisited

    - by user13334359
    Originally way to handle warnings and errors in MySQL stored routine was designed as follows: if warning was generated during stored routine execution which has a handler for such a warning/error, MySQL remembered the handler, ignored the warning and continued execution after routine is executed MySQL checked if there is a remembered handler and activated if any This logic was not ideal and causes several problems, particularly: it was not possible to choose right handler for an instruction which generated several warnings or errors, because only first one was chosen handling conditions in current scope messed with conditions in different there were no generated warning/errors in Diagnostic Area that is against SQL Standard. First try to fix this was done in version 5.5. Patch left Diagnostic Area intact after stored routine execution, but cleared it in the beginning of each statement which can generate warnings or to work with tables. Diagnostic Area checked after stored routine execution.This patch solved issue with order of condition handlers, but lead to new issues. Most popular was that outer stored routine could see warnings which should be already handled by handler inside inner stored routine, although latest has handler. I even had to wrote a blog post about it.And now I am happy to announce this behaviour changed third time.Since version 5.6 Diagnostic Area cleared after instruction leaves its handler.This lead to that only one handler will see condition it is supposed to proceed and in proper order. All past problems are solved.I am happy that my old blog post describing weird behaviour in version 5.5 is not true any more.

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  • JSR Updates

    - by heathervc
    JSR 359, SIP Servlet 2.0, is a new JSR that has been submitted for JSR Review.  The review closes 16 July; the JSR Approval Ballot will be 17-20 July 2012. JSR 355, JCP Executive Committee Merge, has passed the Public Review Ballot and a Proposed Final Draft is now available for review. JSR 340, Java Servlet 3.1 Specification, has posted an Early Draft Review.  The review closes 1 August 2012.

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  • New Java EE 6 Hands-On lab, Devoxx-approved!

    - by alexismp
    A new Java EE 6 HOL (Hands-On Lab) was successfully used yesterday at Devoxx with a room packed with enthusiast conference participants. This is new material which covers a lot of Java EE ground in a single document. As it is the case for most GlassFish-related labs, the list of software requirements is dead-simple and short: a recent JDK (6 or 7) and NetBeans 7.x ("Java EE" or "All") which comes with GlassFish. Of course GlassFish can also be downloaded separately and used from other IDEs such as Eclipse and IntelliJ or even (Emacs). The didactic nature of the HOL document should make it useful for anyone interested in learning Java EE 6 on their own time and pace. If you have feedback about the content or about GlassFish, make sure you voice your concerns (or praises) to the GlassFish Users alias as indicated in the document. Feedback will be taken into account in the form of updates to the document as well as enhancements to GlassFish (ideally in 3.1.2).

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  • Context Sensitive JTable (Part 2)

    - by Geertjan
    Now, having completed part 1, let's add a popup menu to the JTable. However, the menu item in the popup menu should invoke the same Action as invoked from the toolbar button created yesterday. Add this to the constructor created yesterday: Collection<? extends Action> stockActions =         Lookups.forPath("Actions/Stock").lookupAll(Action.class); for (Action action : stockActions) {     popupMenu.add(new JMenuItem(action)); } MouseListener popupListener = new PopupListener(); // Add the listener to the JTable: table.addMouseListener(popupListener); // Add the listener specifically to the header: table.getTableHeader().addMouseListener(popupListener); And here's the standard popup enablement code: private JPopupMenu popupMenu = new JPopupMenu(); class PopupListener extends MouseAdapter { @Override public void mousePressed(MouseEvent e) { showPopup(e); } @Override public void mouseReleased(MouseEvent e) { showPopup(e); } private void showPopup(MouseEvent e) { if (e.isPopupTrigger()) { popupMenu.show(e.getComponent(), e.getX(), e.getY()); } } }

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  • Software Engineering: Off to a Bad Start?

    - by Bob Rhubart
    The opening remarks for Real Software Engineering, Living Social developer Glenn Vanderburg's keynote presentation at QCon 2012 in San Francisco, include this: The people who started the software engineering field and movement, from the very beginning, misunderstood two very important things: software and engineering. And as a result, the field went off in the wrong direction from the very start, and legitimized certain ways of doing things and certain paths of research that really have not been very fruitful. Vanderburg's presentation is fascinating, often funny, and well worth watching, especially in light of how cloud computing and other technological shifts are redefining IT roles. Related Content Dissing Architects, or "What's wrong with this coffee?" Out of the Tower, into the Trenches Readers react to "Out of the Tower; Into the Trenches" IT Architecture, Complex Systems, and Gardening Podcast: Who Gets to be a Software Architect?

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  • Screencast: "Unlocking the Java EE Platform with HTML5"

    - by Geertjan
    The Java EE platform aims to increase your productivity and reduce the amount of scaffolding code needed in Java enterprise applications. It encompasses a range of specifications, such as JPA, EJB, JSF, and JAX-RS. How do these specifications fit together in an application, and how do they relate to each other? And how can HTML5 be used to leverage Java EE? In this recording of a session I did last week at Oredev in Malmo, Sweden, you learn how Java EE works and how it can be integrated with HTML5 front ends, via HTML, JavaScript, and CSS.

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  • The Freemium-Premium Puzzle

    The more time I spend thinking about the value of information, the more I found that digitalizing information significantly changed the 'information markets', potentially in an irreversible manner. The graph at the bottom outlines my current view. The existing business models tend to be the same in the digital and analogue information world, i.e. revenue is derived from a combination of consumers' payments and advertisement. Even monetizing 'meta-information' such as search engines isn't new. Just think of the once popular 'Who'sWho'. What really changed is the price-value ratio. The curve is pushed down, closer to the axis. You pay less for the same, or often even get more for less. If you recall the capabilities I described in relevance of information you will see that there are many additional features available for digital content compared to analogue content. I think this is a good 'blue ocean strategy' by combining existing capabilities in a new way. (Kim W.C. & Mauborgne, R. (2005) Blue Ocean Strategies. Boston: Harvard Business School Publishing.). In addition the different channels of digital information distribution significantly change the value of information. I will touch on this in one of my next blogs. Right now, many information providers started to offer 'freemium' content through digital channels, hoping to get a premium for the 'full' content. No freemium seems to take them out of business, because they are apparently no longer visible in today's most relevant channels of information consumption. But, the more freemium is provided, the lower the premium gets; a truly puzzling situation. To make it worse, channel providers increasingly regard information as a value adding and differentiating activity. Maybe new types of exclusive, strategic alliances will solve the puzzle, introducing new types of 'gate-keepers', which - to me - somehow does not match the spirit of the WWW and the generation Y's perception of information consumption and exchange.

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  • Recent EC Meetings - RIM forfeits EC seat

    - by heathervc
    Materials and minutes from the JCP EC Face-to-Face Meeting, held September 2012 in Prague, are now available on the EC Meeting Summaries page.  Topics included JCP.Next, a JCP 2.8 progress report, Inactive JSRs, and two Spec Lead presentations. In October 2011, new EC Standing Rules went into effect. The Rules include the following: "Missing five meetings in a row, or missing more than two-thirds of all meetings in any consecutive twelve-month period, results in loss of EC membership."  Last week, the JCP EC met for their October EC teleconference meeting.  RIM missed this meeting, and has now missed five meetings in a row (see the attendance chart); therefore, RIM has forfeited their EC membership. Results from the 2012 EC Elections will be available on 30 October.  The new merged EC will go into effect on 12 November.

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  • JavaFX: Use a Screen with your Scene!

    - by user12610255
    Here's a handy tip for sizing your application. You can use the javafx.stage.Screen class to obtain the width and height of the user's screen, and then use those same dimensions when sizing your scene. The following code modifies default "Hello World" application that appears when you create a new JavaFX project in NetBeans. package screendemo; import javafx.application.Application; import javafx.event.ActionEvent; import javafx.event.EventHandler; import javafx.scene.Group; import javafx.scene.Scene; import javafx.scene.control.Button; import javafx.stage.Stage; import javafx.stage.Screen; import javafx.geometry.Rectangle2D; public class ScreenDemo extends Application { public static void main(String[] args) { Application.launch(args); } @Override public void start(Stage primaryStage) { primaryStage.setTitle("Hello World"); Group root = new Group(); Rectangle2D screenBounds = Screen.getPrimary().getVisualBounds(); Scene scene = new Scene(root, screenBounds.getWidth(), screenBounds.getHeight()); Button btn = new Button(); btn.setLayoutX(100); btn.setLayoutY(80); btn.setText("Hello World"); btn.setOnAction(new EventHandler() { public void handle(ActionEvent event) { System.out.println("Hello World"); } }); root.getChildren().add(btn); primaryStage.setScene(scene); primaryStage.show(); } } Running this program will set the Stage boundaries to visible bounds of the main screen. -- Scott Hommel

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  • JSR updates - First Merged EC Ballots

    - by Heather VanCura
    As the second part of the JCP.Next effort, JCP 2.9 launched 2 weeks ago on 13 November, and the first JCP EC ballots with the Merged EC have concluded.   JSR 339, JAX-RS 2.0: The Java API for RESTful Web Services, passed EC Public Review Ballot and was approved by the EC -- 22 yes votes, 2 abstain, 2 did not vote -- view results. JSR 349, Bean Validation 1.1, passed EC Public Review Ballot and was approved by the EC --17 yes votes, 2 abstain, 5 did not vote --  view results.

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  • Free & Open Source XML Editor Built on Maven

    - by Geertjan
    Here you can download the sources of an XML Editor that uses libraries from NetBeans IDE 7.3 Beta 2 as its basis, while using Maven as its build system: http://java.net/projects/nb-api-samples/sources/api-samples/show/versions/7.3/misc/XMLEditorInMavenNBRCP And here's what it looks like to the user: Note: The Favorites window has been rebranded as "File Browser" and Nimbus is used for the look and feel, thanks to a .conf file that is registered in the POM of the application project.  The cool part is that I didn't type one line of code to get the above result and that only those pieces that an XML Editor actually needs are included in the application, though it could be pruned even further.

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