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• How to declare a vector or array of reducer objects in Cilk++?

  - by Jin

  Hi All, I had a problem when I am using Cilk++, an extension to C++ for parallel computing. I found that I can't declare a vector of reducer objects: typedef cilk::reducer_opadd<int> T_reducer; vector<T_reducer> bitmiss_vec; for (int i = 0; i < 24; ++i) { T_reducer r; bitmiss_vec.push_back(r); } However, when I compile the code with Cilk++, it complains at the push_back() line: cilk++ geneAttack.cilk -O1 -g -lcilkutil -o geneAttack /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Tp*, const _Tp&) [with _Tp = cilk::reducer_opadd<int>]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:601: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/ext/new_allocator.h:107: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:252: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:230: error: ‘cilk::reducer_opadd<Type>& cilk::reducer_opadd<Type>::operator=(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:256: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In static member function ‘static _BI2 std::__copy_backward<_BoolType, std::random_access_iterator_tag>::__copy_b(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*, bool _BoolType = false]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:465: instantiated from ‘_BI2 std::__copy_backward_aux(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:474: instantiated from ‘static _BI2 std::__copy_backward_normal<<anonymous>, <anonymous> >::__copy_b_n(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*, bool <anonymous> = false, bool <anonymous> = false]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:540: instantiated from ‘_BI2 std::copy_backward(_BI1, _BI1, _BI2) [with _BI1 = cilk::reducer_opadd<int>*, _BI2 = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:253: instantiated from ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:230: error: ‘cilk::reducer_opadd<Type>& cilk::reducer_opadd<Type>::operator=(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_algobase.h:433: error: within this context /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h: In function ‘void std::_Construct(_T1*, const _T2&) [with _T1 = cilk::reducer_opadd<int>, _T2 = cilk::reducer_opadd<int>]’: /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:87: instantiated from ‘_ForwardIterator std::__uninitialized_copy_aux(_InputIterator, _InputIterator, _ForwardIterator, std::__false_type) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:114: instantiated from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_uninitialized.h:254: instantiated from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>) [with _InputIterator = cilk::reducer_opadd<int>*, _ForwardIterator = cilk::reducer_opadd<int>*, _Tp = cilk::reducer_opadd<int>]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/vector.tcc:275: instantiated from ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_vector.h:605: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp = cilk::reducer_opadd<int>, _Alloc = std::allocator<cilk::reducer_opadd<int> >]’ geneAttack.cilk:667: instantiated from here /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/cilk++/reducer_opadd.h:229: error: ‘cilk::reducer_opadd<Type>::reducer_opadd(const cilk::reducer_opadd<Type>&) [with Type = int]’ is private /usr/local/cilk/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.2.4/../../../../include/c++/4.2.4/bits/stl_construct.h:81: error: within this context make: *** [geneAttack] Error 1 jinchen@galactica:~/workspace/biometrics/genAttack$ make cilk++ geneAttack.cilk -O1 -g -lcilkutil -o geneAttack geneAttack.cilk: In function ‘int cilk cilk_main(int, char**)’: geneAttack.cilk:670: error: expected primary-expression before ‘,’ token geneAttack.cilk:670: error: expected primary-expression before ‘}’ token geneAttack.cilk:674: error: ‘bitmiss_vec’ was not declared in this scope make: *** [geneAttack] Error 1 The Cilk++ manule says it supports array/vector of reducers, although there are performance issues to consider: "If you create a large number of reducers (for example, an array or vector of reducers) you must be aware that there is an overhead at steal and reduce that is proportional to the number of reducers in the program. " Anyone knows what is going on? How should I declare/use vector of reducers? Thank you

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• Ajax based progress bar

  - by Punit

  I am developing a progress bar using Ajax. My client side code is working fine, but I have issue at server side. I am using C based CGI. if(i == inc && pb_inc<=100) { fptr = fopen("progress_bar.txt", "w"); fprintf(fptr,"%d", j); fclose(fptr); pb_inc++; } basically I am increasing progress bar after certain number of bytes. What I see here is that the CGI doesn't let display any data to text file until it has sent all the data to file one by one. i have referred to http://www.redips.net/javascript/ajax-progress-bar/ Any idea whats happening here?

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• What is the effect of running an application with "Unlimited Stack" size

  - by NSA

  Hello All, I have inherited some code that I need to maintain that can be less than stable at times. The previous people are no longer available to query as to why they ran the application in an environment with unlimited stack set, I am curious what the effects of this could be? The application seems to have some unpredictable memory bugs that we cannot find and running the application under valgrind is not an option because it slows the application down so much that we cannot actually run it. So any thoughts on what the effects of this might be are appreciated. Thank you.

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• UML or design tools for websites

  - by Malfist

  What is a good tool to design the implementation of websites? I typically use UMl to design applications, but I feel that does not apply well to websites, specifically the heavy emphasis on UI that websites require. What would be a good tool to use to plan a webpage?

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• how to create a window in c

  - by astha goyal

  hello i want to create a window,for that i know i hve to use gtk+ toolkit bt how to use it???

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• Regex for capturing number in brackets

  - by neversaint

  I have a lines like this NF419andZNF773 (e=10^-92,). ZNF571 (e=2 10^-14,) What's the regex for extracting the results above so that it gives NF419andZNF773 - 10^-92 ZNF571 - 2 10^-14 I tried this but fail. $line =~ /(\w+)\s\(e=\s(.*),\)/; print "$1 - $2\n";

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• Query size of block device file in Python

  - by ??O?????

  Hello. I have a Python script that reads a file (typically from optical media) marking the unreadable sectors, to allow a re-attempt to read said unreadable sectors on a different optical reader. I discovered that my script does not work with block devices (e.g. /dev/sr0), in order to create a copy of the contained ISO9660/UDF filesystem, because os.stat().st_size is zero. The algorithm currently needs to know the filesize in advance; I can change that, but the issue (of knowing the block device size) remains, and it's not answered here, so I open this question. I am aware of the following two related SO questions: Determine the size of a block device (/proc/partitions, ioctl through ctypes) how to check file size in python? (about non-special files) Therefore, I'm asking: in Python, how can I get the file size of a block device file?

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• Real-time aggregation of files from multiple machines to one

  - by dmitry-kay

  I need a tool which gets a list of machine names and file wildcards. Then it connects to all these machines (SSH) and begins to monitor changes (appendings to the end) in each file matched by wildcards. New lines in each such file are saved to the local machine to the file with the same name. (This is a task of real-time log files collecting.) I could use ssh + tail -f, of course, but it is not very robust: if a monitoring process dies and then restarts, some data from remote files may be lost (because tail -f does not save the position at which it is finished before). I may write this tool manually, but before - I'd like to know if such tool already exists or not.

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• Inode to device information

  - by Methos

  I have 3 questions: I want to figure out if a file belongs to a USB device given the file inode. By looking in the latest kernel sources (2.6.33) on LXR, I think one can find that information by following pointers as follows: inode-super_block-block_device-backing_dev_info-device-device_driver(or device_type). However, the kernel that I am working with - 2.6.22.14 - does not have struct device pointer in the backing_dev_info object. So how can I figure out to which device does a file belong to from just the inode? I see that each of the inode, super_block and block_device contain an object of type 'dev_t'. But even after searching a lot, I could not find out how to convert 'dev_t' into struct device *. Is there any way to get that infomation? I tried to print device major and minor numbers using imajor(inode) and iminor(inode). However, for every file - belonging to hdd or usb - it always prints major and minor number as zero. Why would that be happening? I searched online for USB major numbers and I found out that major number for a USB is 180. However, on multiple machines, it showed me the major number associated with the USB dev as 253. $ ls -ltr /dev/usb* crw-rw---- 1 root root 253, 4 2010-04-13 17:20 /dev/usbmon4 crw-rw---- 1 root root 253, 3 2010-04-13 17:20 /dev/usbmon3 crw-rw---- 1 root root 253, 8 2010-04-13 17:20 /dev/usbmon8 crw-rw---- 1 root root 253, 5 2010-04-13 17:20 /dev/usbmon5 crw-rw---- 1 root root 253, 1 2010-04-13 17:20 /dev/usbmon1 crw-rw---- 1 root root 253, 7 2010-04-13 17:20 /dev/usbmon7 Why is that so?

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• Is this how I do a crontab? Just put it in the file?

  - by alex

  crontab -e Then, paste it in? 5 * * * * python /home/alex/scanTags.py

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• compile with -ansi -pedantic -Wall switches automatically with gcc

  - by Jef Ty

  We are required to compile C source codes using gcc in this manner: gcc -ansi -pedantic -Wall program.c I'm wondering how can I 'automate' this so when I enter: gcc program.c It will automatically compile with the 3 switches. Is this possible?

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• PIL's Image.show() brings up *two* different viewers

  - by DarenW

  When toying with images in the python shell, I use image.show(), where image is an instance of Image. Long ago nothing happened, but after defining a symlink to mirage named "xv", I was happy. The last few days, show() will bring up both ImageMagick's display and also Mirage. It's not clear where show() gets information on what to run. Documentation wasn't helpful. How to make it behave and bring up only what it thinks is xv?

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• how to find the last instance of a setting in a config file

  - by Glenn Kelley

  I am trying to figure out how to find the last entry of a string in multiple config files across a server. Each of the strings will be in the /home/***usernamewouldbehere/public_html/typo3conf/localconf.php file In short - the last entry in the config files will point to the database server the application is utilizing - and we need to know which accounts point to which db server. While I can run something like this - grep "$_db_host" /home/*/public_html/conf/localconf.php It does not really help much because it gives us way to much information ... and not what we really need. What i really need to know is the last entry of this string $_db_host = 'xx'; and to sort them out in an export file Since the config files may have multiple entries (example below) $_db_host = 'localhost'; $_db_host = '10.0.1.234'; It would be great to list in a file all of those that have the entry for 'localhost' and then list all of those that have the entry for '10.0.1.234' (or whichever server there may be there) but even if I need to do that manually that would be great. I am not sure how to get to it using Awk - ... and really stuck What I am hoping for is something that would be piped as follows db_host = localhost /home/username1/www/conf/localconf.php db_host = localhost / home/username2/public_html/conf/localconf.php db_host= '10.1.2.23' /home/username55/public_html/conf/localconf.php hoping that helps you help me :-)

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• vim: highlight bash scripts?

  - by ajsie

  my vim editor auto highlights php files, html files and so on. but when i type: vim scriptname and inside it write a bash script, it doesnt highlight it. how come?

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• Perl: Recursively rename all files and directories

  - by user305801

  I need to recursively rename every file and directory. I convert spaces to underscores and make all file/directory names to lowercase. How can I make the following script rename all files in one run? Currently the script needs to be run several times before all the files/directories are converted. The code is below: #!/usr/bin/perl use File::Find; $input_file_dir = $ARGV[0]; sub process_file { $clean_name=lc($_); $clean_name=~s/\s/_/g; rename($_,$clean_name); print "file/dir name: $clean_name\n"; } find(\&process_file, $input_file_dir);

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• /proc/user_beancounter how to perform monitoring

  - by glaz666

  Hi, I want to perform monitoring of /proc/user_beancounters to see when the system hits the limits and what process is to blame. Does anybody know tools for this issue?

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• help finding a hosing company with unixODBC and FreeTDS support

  - by patrick

  I need to find a hosting company that provides a LAMP stack, the P being PHP. Finding that is pretty easy, but I have a further requirement of unixODBC and FreeTDS or some equilant. The project will require a remote connection to a Microsoft SQL 2005 database. Most of the project will use a local MySQL database but it also requires data from a remote MS SQL 2005 database. In my reading it looks like I'll need unixODBC and FreeTDS installed on the server to make that connection. So far I've been unable to find a shared host that provides these. Can anyone suggest or use a host that might work? The project has budget limits so we we're hoping to find a shared host.

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• not able to register sip user on red5server, using red5phone

  - by sunil221

  I start the red5, and then i start red5phone i try to register sip user , details i provide are username = 999999 password = **** ip = asteriskserverip and i got --- Registering contact -- sip:[email protected]:5072 the right contact could be --- sip :99999@asteriskserverip this is the log: SipUserAgent - listen -> Init... Red5SIP register [SIPUser] register RegisterAgent: Registering contact <sip:[email protected]:5072> (it expires in 3600 secs) RegisterAgent: Registration failure: No response from server. [SIPUser] SIP Registration failure Timeout RegisterAgent: Failed Registration stop try. Red5SIP Client leaving app 1 Red5SIP Client closing client 35C1B495-E084-1651-0C40-559437CAC7E1 Release ports: sip port 5072 audio port 3002 Release port number:5072 Release port number:3002 [SIPUser] close1 [SIPUser] hangup [SIPUser] closeStreams RTMPUser stopStream [SIPUser] unregister RegisterAgent: Unregistering contact <sip:[email protected]:5072> SipUserAgent - hangup -> Init... SipUserAgent - closeMediaApplication -> Init... [SIPUser] provider.halt RegisterAgent: Registration failure: No response from server. [SIPUser] SIP Registration failure Timeout please let me know if i am doing anything wrong. regards Sunil

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• how to compile a program with gtkmozembed.h

  - by ganapati hegde

  Hi, i have written a program under ubuntu, in which i include gtkmozembed.h. I am facing a problem in compiling the program.Below is the simplest form of a program which uses gtkmozembed. #include <gtk/gtk.h> #include <stdio.h> #include <gtkmozembed.h> int main(){ GtkWidget *mozEmbed; mozEmbed = gtk_moz_embed_new(); return 0; } Eventhough, the above program is doing nothing, compiling that program is a lot for me... I am trying to comile the above program like below gcc `pkg-config --libs --cflags gtk+-2.0` test.c -o test and it is giving the following error... error: gtkmozembed.h: No such file or directory I can understand, something else has to be added to the above gcc line,so that the compiler can find the gtkmozembed.h, but not getting what is that, 'something'...Looking for someone's help..Thank you...

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• how do i claim a low-numbered port as non-root the "right way"

  - by qbxk

  I have a script that I want to run as a daemon listening on a low-numbered port (< 1024) Script is in python, though answers in perl are also acceptable. The script is being daemonized using start-stop-daemon in a startup script, which may complicate the answer What I really (think) don't want is to type ps -few and see this process running with a "root" on it's line. How do I do it? ( from my less-than-fully-educated-about-system-calls perspective, I can see 3 avenues, Run the script as root (no --user/--group/--chuid to start-stop-daemon), and have it de-escalate it's user after it claims the port Setuid root on the script (chmod u+s), and run the script as the running user, (via --user/--group/--chuid to start-stop-daemon, the startup script still has to be called as root), in the script, acquire root privileges, claim the port, and then revert back to normal user something else i'm unaware of )

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• Bash script to replace spaces in file names

  - by armandino

  Can anyone recommend a safe solution to recursively replace spaces with underscores in file and directory names starting from a given root directory? For example, $ tree . |-- a dir | `-- file with spaces.txt `-- b dir |-- another file with spaces.txt `-- yet another file with spaces.pdf becomes $ tree . |-- a_dir | `-- file_with_spaces.txt `-- b_dir |-- another_file_with_spaces.txt `-- yet_another_file_with_spaces.pdf

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• how to make a partition which is in ext-2 , a writable disk?

  - by mekasperasky

  i have debian system in which i have mounted the OS on a ext-3 system . I have got a partition of 60 gb , which is formatted to ext-2 partition . Even if I mount , i cant write anything into it . How can i change that ? How can I make the disk writable?

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• Untar, ungz, gz, tar - how do you remember all the useful options?

  - by deadprogrammer

  I am pretty sure I am not the only one with the following problem: every time I need to uncompress a file in *nix I can't remember all the switches, and end up googling it, which is surprizing considering how often I need to do this. Do you have a good compression cheat sheet? Or how about a mnemonic for all those nasty switches in tar? I am making this article a wiki so that we can create a nice cheat sheet here. Oh, and about man pages: is there's one thing they are not helpful for, it's for figuring out how to uncompress a file.

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• How to completely wipe rubygems along with rails etc

  - by Earlz

  Ok, so I decided I'd be cool and try to use Rails3 that's in beta. Then, things were getting hard to manage so I got rvm. I installed ruby 1.9.2-head in rvm and things were working, and then a computer restart later rails wouldn't start up. So I figured I'd just try running the system ruby and start rails in it. same error. Then, I uninstalled rails3 and got rails: no such file or directory type errors.. So now I'm royally screwed because rails2 is still installed but will not uninstall because of invisible dependencies, along with a lot of other random gems. How do I completely clear out all ruby gems and such so I can start anew?

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• How can I get a list of licenses from intalled RPMs?

  - by Peter

  We've been asked to list all the software and licenses used in our organization. Without deciding the value of this request, I'd like to get my Fedora laptop to answer the question easily. rpm -qa Gives me a list of packages, but no license data. My next step is to take that output and write a script to query each package's license. Anyone got an easier idea?

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