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  • Creating multiple csv files from data within a csv file.

    - by S1syphus
    System OSX or Linux I'm trying to automate my work flow at work, each week I receive an excel file, which I convert to a csv. An example is: ,,L1,,,L2,,,L3,,,L4,,,L5,,,L6,,,L7,,,L8,,,L9,,,L10,,,L11, Title,r/t,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,neede d,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst EXAMPLEfoo,60,6,6,6,0,0,0,0,0,0,6,6,6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 EXAMPLEbar,30,6,6,12,6,7,14,6,6,12,6,6,12,6,8,16,6,7,14,6,7.5,15,6,6,12,6,8,16,6,0,0,6,7,14 EXAMPLE1,60,3,3,3,3,5,5,3,4,4,3,3,3,3,6,6,3,4,4,3,3,3,3,4,4,3,8,8,3,0,0,3,4,4 EXAMPLE2,120,6,6,3,0,0,0,6,8,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 EXAMPLE3,60,6,6,6,6,8,8,6,6,6,6,6,6,0,0,0,0,0,0,6,8,8,6,6,6,0,0,0,0,0,0,0,10,10 EXAMPLE4,30,6,6,12,6,7,14,6,6,12,6,6,12,3,5.5,11,6,7.5,15,6,6,12,6,0,0,6,9,18,6,0,0,6,6.5,13 And so you can get a picture of how it looks in excel: What I need to do, is create multiple csv files for each instance in row 1, so L1, L2, L3, L4... And within that each csv file it needs to contain the title, r/t, needed So for L1 an example out put would look like: EXAMPLEfoo,60,6 EXAMPLEbar,30,6 EXAMPLE1,60,3 EXAMPLE2,120,6 EXAMPLE3,60,6 EXAMPLE4,30,6 And for L2: EXAMPLEfoo,60,0 EXAMPLEbar,30,6 EXAMPLE1,60,3 EXAMPLE2,120,0 EXAMPLE3,60,6 EXAMPLE4,30,6 And so on. I have tried playing around with sed and awk and hit google but I have found nothing that really solves the issue. I'd imagine perl would be particular suited to this or maybe python, so I would be more than happy to accept suggestions from users. So, any suggestions? Thanks in advance.

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  • How to: Simulating keystroke inputs in shell to an app running in an embedded target

    - by fzkl
    I am writing an automation script that runs on an embedded linux target. A part of the script involves running an app on the target and obtaining some data from the stdout. Stdout here is the ssh terminal connection I have to the target. However, this data is available on the stdout only if certain keys are pressed and the key press has to be done on the keyboard connected to the embedded target and not on the host system from which I have ssh'd into the target. Is there any way to simulate this? Edit: Elaborating on what I need - I have an OpenGL app that I run on the embedded linux (works like regular linux) target. This displays some graphics on the embedded system's display device. Pressing f on the keyboard connected to the target outputs the fps data onto the ssh terminal from which I control the target. Since I am automating the process of running this OpenGL app and obtaining the fps scores, I can't expect a keyboard to be connected to the target let alone expect a user to input a keystroke on the embedded target keyboard. How do I go about this? Thanks.

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  • unix How to compare two files and get results to third file?

    - by Martin Mocik
    I have two files 1st file is like this: www.example.com www.domain.com www.otherexample.com www.other-domain.com www.other-example.com www.exa-ample.com 2nd file is like this (numbers after ;;; are between 0-10): www.example.com;;;2 www.domain.com;;;5 www.other-domain;;;0 www.exa-ample.com;;;4 and i want compare these two files and output to third file like this: www.otherexample.com www.other-example.com Both files have large size (over 500mb)

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  • What size of folders show ls -la

    - by Bkmz
    Hi. I'm interesting in information what show me output ls -la in linux. So, default size is 4K. But if there are a lot of files, maybe with zero size, such as PHP sessions =), the size != 4K. What showing me ls -la? And after, when i clean this folder i see tha last max size.

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  • Formatting with echo command

    - by johannix
    The actual situation is a bit complicated, but the issue I'm running into is that I have an echo command within an eval command. Like so: $ eval echo 'keep my spacing' keep my spacing $ echo 'keep my spacing' keep my spacing I was wondering how I could keep eval from stripping my spacing so that the first command prints out the same message as the second...

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  • Tool to create UI for Linux (Gnome) shell scripts

    - by stwissel
    I'm writing a bunch of Linux shell scripts with complex selections. For now I use zenity for prompts. I'd rather use something where I can show more than one UI element at a time and query it in a script (e.g. a list and some checkboxed and a file picker and an entry field. What are my options?

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  • SED, using variables and in with an array

    - by S1syphus
    What I am trying to do is run the sed on multiple files in the directory Server_Upload, using variables: AB${count} Corresponds, to some variables I made that look like: echo " AB1 = 2010-10-09Three " echo " AB2 = 2009-3-09Foo " echo " AB3 = Bar " And these correspond to each line which contains a word in master.ta, that needs changing in all the text files in Server_Upload. If you get what I mean... great, I have tried to explain it the best I can, but if you are still miffed I'll give it another go as I found it really hard to convey what I mean. cd Server_Upload for fl in *.UP; do mv $fl $fl.old done count=1 saveIFS="$IFS" IFS=$'\n' array=($(<master.ta)) IFS="$saveIFS" for i in "${array[@]}" do sed "s/$i/AB${count}/g" $fl.old > $fl (( count++ )) done It runs, doesn't give me any errors, but it doesn't do what I want, so any ideas?

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  • Unescpaing huge single-line string on Linux

    - by Lajos Nagy
    I ended up with a huge, single line string literal (don't ask me how) where everything is escaped (mostly), including new lines and double quotes. Problem is, I want the original string. The string is huge so I'm not even sure how to begin. Here's what I have: "This\n is \"nice\",\nain\'t it?" This is what I want: This is "nice", ain't it? Again, the problem is that other shell sensitive stuff is not escaped (like $, or !), and that the string is couple of megabytes.

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  • Sort command not working as expected

    - by user964689
    If anybody can help me to write a loop to iterate over files in a folder it would save me a huge amount of time. I think it must be quite a simple solution ,but I currently don't know how to nest a loop within a loop. So far I have this script: cd /folderlocation/ for i in `</textfile_containing_lines_to_iterate_through` do #size=`echo $i | perl -nE '/:([\d-]+)/ && say abs(eval $1)'` #echo "$size" zcat dataset | head -n 18 > temp"$i".vcf tabix dataset $i >> temp"$i".vcf vcftools --window-pi 1000000 --vcf temp10individuals"$i".vcf >> run_summary.txt cat out.windowed.pi >> outputfile_2 #rm temp* done grep -v "PI" outputfile_2 > outputfile rm outputfile_2 I need to expand this so that the script will run multiple times, through all of the 'textfiles_containing_lines_to_iterate_through'. Currently I change the name of the textfile manually each time and re-run the script. So I'd need a loop that does this for file in folder, and also that uses the name of the file as part of the outputfile name so that I can match an output file to an inputfile. Any help would be really useful and greatly appreciated! Many thanks in advance.

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  • Find directories not containing a specific directory

    - by Morgan ARR Allen
    Been searching around for a bit and cannot find a solution for this one. I guess I'm looking for a leaf-directory by name. In this example I'd like to get a list of directories call 'modules' that do NOT have a subdirectory called module. modules/package1/modules/spackage1 modules/package1/modules/spackage2 modules/package1/modules/spackage3/modules modules/package1/modules/spackage3/modules/spackage1 modules/package2/modules/ The list I desire would contain modules/package1/modules/spackage3/modules/ modules/package2/modules/ All the directories named module that do not have a subdirectory called module I started with trying something this with no luck find . -name modules \! -exec sh -c 'find -name modules' \; -exec works on exit code, okay lets pass the count as exit code find . -name modules -exec sh -c 'exit $(find {} -name modules|grep -n ""|tail -n1|cut -d: -f1)' \; This should take the count of each subdirectory called modules and exit with it. No such love.

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  • Can this be done by sed?

    - by SpawnCxy
    Hiall,I need to deal with a file which seems as follows: 1234 4343 5345345 53453 4343 And what I want to do is to execute follow command to the number of each line: grep $num1 ./somepath #get num1_res Then write $num1 and $num1_res to another file which will be: 1234 32 4343 234 5345345 349 53453 78 #...etc Any good solution by sed?Or some other simple way? Thanks.

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  • CVS branch name from tag name

    - by Jamie
    I have a number of modules in CVS with different tags. How would I go about getting the name of the branch these tagged files exist on? I've tried checking out a file from the module using cvs co -r TAG and then doing cvs log but it appears to give me a list of all of the branches that the file exists on, rather than just a single branch name. Also this needs to be an automated process, so I can't use web based tools like viewvc to gather this info.

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  • I have an Errno 13 Permission denied with subprocess in python

    - by wDroter
    The line with the issue is ret=subprocess.call(shlex.split(cmd)) cmd = /usr/share/java -cp pig-hadoop-conf-Simpsons:lib/pig-0.8.1-cdh3u1-core.jar:lib/hadoop-core-0.20.2-cdh3u1.jar org.apache.pig.Main -param func=cat -param from =foo.txt -x mapreduce fsFunc.pig The error is. File "./run_pig.py", line 157, in process ret=subprocess.call(shlex.split(cmd)) File "/usr/lib/python2.7/subprocess.py", line 493, in call return Popen(*popenargs, **kwargs).wait() File "/usr/lib/python2.7/subprocess.py", line 679, in __init__ errread, errwrite) File "/usr/lib/python2.7/subprocess.py", line 1249, in _execute_child raise child_exception OSError: [Errno 13] Permission denied Let me know if any more info is needed. Any help is appreciated. Thanks.

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  • Accessing variable from ARGV

    - by snaken
    I'm writing a cPanel postwwwact script, if you're not familiar with the script its run after a new account is created. it relies on the user account variable being passed to the script which i then use for various things (creating databases etc). However, I can't seem to find the right way to access the variable i want. I'm not that good with shell scripts so i'd appreciate some advice. I had read somewhere that the value i wanted would be included in $ARGV{'user'} but this simply gives "root" as opposed to the value i need. I've tried looping through all the arguments (list of arguments here) like this: #!/bin/sh for var do touch /root/testvars/$var done and the value i want is in there, i'm just not sure how to accurately target it. There's info here on doing this with PHP or Perl but i have to do this as a shell script. EDIT Ideally i would like to be able to call the variable by something other than $1 or $2 etc as this would create issues if an argument is added or removed Any ideas?

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  • How do I can linux flock command to prevent another root process deleting a file?

    - by Danmaxis
    Hello there, I would like to prevent one of my root process from deleting a certaing file. So I came across the flock command, it seems to fit my need, but I didnt get its sintax. If I only indicate a shared lock, it doesnt work: flock -s "./file.xml" If I add a timeout parameter, it still doesnt work flock -s -w5 "./file.xml" It seems that way, it fits in flock [-sxun][-w #] fd# way. (What is this fd# parameter?) So, I tried the flock [-sxon][-w #] file [-c] command Using flock -s -w5 "./file.xml" -c "tail -3 ./file.xml" and it worked, tail command at ./file.xml was executed. But I would like to know, does the lock end after the command or does it last 5 seconds after the end of the command execution? My main question is, how can I prevent another root process deleting a file in linux?

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