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  • Python structure mistake

    - by jaddy123
    I'm writing a program in which I can Reverse the sequence and Replace all As with Ts, all Cs with Gs, all Gs with Cs, and all Ts with As. the program is to read a sequence of bases and output the reverse complement sequence. I am having trouble to do it so can anyone please help me with this by having a look on my code: word = raw_input("Enter sequence: ") a = word.replace('A', 'T') b = word.replace('C', 'G') c = word.replace('G', 'C') d = word.replace('T', 'A') if a == word and b == word and c == word and d == word: print "Reverse complement sequence: ", word And I want this sort of output: Enter sequence: CGGTGATGCAAGG Reverse complement sequence: CCTTGCATCACCG Regards

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  • An array of structures in C...

    - by 00010000
    For the life of me I can't figure out the proper syntax for creating an array of structures in C. I tried this: struct foo { int x; int y; } foo[][] = { { { 1, 2 }, { 4, 5 }, { -1, -1 } }, { { 55, 44 } { 100, 200 }, } }; So for example foo[1][0].x == 100, foo[0][1].y == 5, etc. But GCC spits out a lot of errors. If anyone could provide the proper syntax that'd be great. EDIT: Okay, I tried this: struct foo { const char *x; int y; }; struct foo bar[2][] = { { { "A", 1 }, { "B", 2 }, { NULL, -1 }, }, { { "AA", 11 }, { "BB", 22 }, { NULL, -1 }, }, { { "ZZ", 11 }, { "YY", 22 }, { NULL, -1 }, }, { { "XX", 11 }, { "UU", 22 }, { NULL, -1 }, }, }; But GCC gives me "elements of array bar have incomplete type" and "excess elements in array initializer".

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  • Structure within union and bit field

    - by java
    #include <stdio.h> union u { struct st { int i : 4; int j : 4; int k : 4; int l; } st; int i; } u; int main() { u.i = 100; printf("%d, %d, %d", u.i, u.st.i, u.st.l); } I'm trying to figure out the output of program. The first outputs u.i = 100 but I can't understand the output for u.st.i and u.st.l. Please also explain bit fields.

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  • Data Structure Brushup (Java)

    - by Daddy Warbox
    This should be easy for many of you, but for me it's just another bit of rust needing to be chipped away as I get back into basic Java coding. Using bloody associative arrays for so long in other languages have turned me nice and spoiled. :P My problem is simple: I'm storing a set of objects, each containing a string and a number, in a list. I would like each object inserted into this list to be sorted alphabetically by its string. I would also like to be able to retrieve objects from the list by their string as well. I would like to do this as formally and/or efficiently as possible. Is there something already available in the Java standard libraries for this?

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  • Mysql database structure...

    - by Patrick
    I'm creating a members site, and I'm currently working on the user Preference settings. Should I create a table with all the preference fields (about 17 fields) or should I include them in the main member table along with the account settings? Is there a limit as to how many fields I should have in a table? currently the member table has about 21 fields... not sure if its okay to add another 17 more fields when I can easily just put them in another table. It'll take more coding to pull up the data though... any sugguestions?

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  • dictionary/map/key-value pairs data structure in C

    - by morgancodes
    How does one construct and access a set of key-value pairs in C? To use a silly simple example, let's say I want to create a table which translates between an integer and its square root. If I were writing javascript, I could just do this: var squareRoots = { 4: 2, 9: 3, 16: 4, 25: 5 } and then access them like: var squareRootOf25 = squareRoots[5] What's the prettiest way to do this in C? What if I want to use one type of enum as the key and another type of enum as the value?

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  • Class Inside Structure

    - by Knvn
    Could some one please explain, What happens when a reference type is defined inside the value type. I write the following code: namespace ClassInsideStruct { class ClassInsideStruct { static void Main(string[] args) { ValueType ObjVal = new ValueType(10); ObjVal.Display(); ValueType.ReferenceType ObjValRef = new ValueType.ReferenceType(10); ObjValRef.Display(); Test(ObjVal, ObjValRef); ObjVal.Display(); ObjValRef.Display(); Console.ReadKey(); } private static void Test(ValueType v, ValueType.ReferenceType r) { v.SValue = 50; r.RValue = 50; } } struct ValueType { int StructNum; ReferenceType ObjRef; public ValueType(int i) { StructNum = i; ObjRef = new ReferenceType(i); } public int SValue { get { return StructNum; } set { StructNum = value; ObjRef.RValue = value; } } public void Display() { Console.WriteLine("ValueType: " + StructNum); Console.Write("ReferenceType Inside ValueType Instance: "); ObjRef.Display(); } public class ReferenceType { int ClassNum; public ReferenceType(int i) { ClassNum = i; } public void Display() { Console.WriteLine("Reference Type: " + ClassNum); } public int RValue { get { return ClassNum; } set { ClassNum = value; } } } } } Which outputs: ValueType: 10 ReferenceType Inside ValueType Instance: Reference Type: 10 Reference Type: 10 ValueType: 10 ReferenceType Inside ValueType Instance: Reference Type: 50 Reference Type: 50 I'm curious to know, after calling the method Test(ObjVal, ObjValRef), how the values of ReferenceType is changed to 50 which resides inside the ValueType who's value is not changed?

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  • C - How to manipulate typedef structure pointer?

    - by AbhishekJoshi
    typedef struct { int id; char* first; char* last; }* person; person* people; Hi. How can I use this above, all set globally, to fill people with different "person"s? I am having issues wrapping my head regarding the typedef struct pointer. I am aware pointers are like arrays, but I'm having issues getting this all together... I would like to keep the above code as is as well. Edit 1: char first should be char* first.

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  • What is the structure of network managers system-connections files?

    - by Oyks Livede
    could anyone list the complete structure of the configuration files, which network manager stores for known networks in /etc/NetworkManager/system-connections for known networks? Sample (filename askUbuntu): [connection] id=askUbuntu uuid=81255b2e-bdf1-4bdb-b6f5-b94ef16550cd type=802-11-wireless [802-11-wireless] ssid=askUbuntu mode=infrastructure mac-address=00:08:CA:E6:76:D8 [ipv6] method=auto [ipv4] method=auto I would like to create some of them by my own using a script. However, before doing so I would like to know every possible option. Furthermore, this structure seems somehow to resemble the information you can get using the dbus for active connections. dbus-send --system --print-reply \ --dest=org.freedesktop.NetworkManager \ "$active_setting_path" \ # /org/freedesktop/NetworkManager/Settings/2 org.freedesktop.NetworkManager.Settings.Connection.GetSettings Will tell you: array [ dict entry( string "802-11-wireless" array [ dict entry( string "ssid" variant array of bytes "askUbuntu" ) dict entry( string "mode" variant string "infrastructure" ) dict entry( string "mac-address" variant array of bytes [ 00 08 ca e6 76 d8 ] ) dict entry( string "seen-bssids" variant array [ string "02:1A:11:F8:C5:64" string "02:1A:11:FD:1F:EA" ] ) ] ) dict entry( string "connection" array [ dict entry( string "id" variant string "askUbuntu" ) dict entry( string "uuid" variant string "81255b2e-bdf1-4bdb-b6f5-b94ef16550cd" ) dict entry( string "timestamp" variant uint64 1383146668 ) dict entry( string "type" variant string "802-11-wireless" ) ] ) dict entry( string "ipv4" array [ dict entry( string "addresses" variant array [ ] ) dict entry( string "dns" variant array [ ] ) dict entry( string "method" variant string "auto" ) dict entry( string "routes" variant array [ ] ) ] ) dict entry( string "ipv6" array [ dict entry( string "addresses" variant array [ ] ) dict entry( string "dns" variant array [ ] ) dict entry( string "method" variant string "auto" ) dict entry( string "routes" variant array [ ] ) ] ) ] I can create new setting files using the dbus (AddSettings() in /org/freedesktop/NetworkManager/Settings) passing this type of input, so explaining me this structure and telling me all possible options will also help. Afaik, this is a Dictionary{String, Dictionary{String, Variant}}. Will there be any difference creating config files directly or using the dbus?

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  • How did we get saddled with the (hierarchical) filesystem as the basic data structure?

    - by user1936
    I'm self-taught and I don't have a CS degree. The more I've been learning about data structure, the more I wonder, in this day and age, how are we still saddled with the filesystem, with directories and files, as the basic data storage structure on the OS? I understand the simplicity of it, but it seems nowadays that there could be more options available natively. As far as I'm aware, the only project to improve the basic functionality of the filesystem was ReiserFS, where you could tell what line of a file was changed by whom, and when. For instance, if I could have native tagging for files, where I could tag images, diagrams, word-processing documents, an entire code repository, all as belonging to a single project, that would really be helpful to me. Since I'm stuck in the filesystem paradigm, I know that I could put all those into a single folder/directory, but what if they already exist in disparate directories, and they need to stay there? I know there are programs out there that can do this, but why aren't they on the filesystem? Something that would be nice to have is some kind of relational feature in the filesystem, like you get with RDBMSes. I understand that that was supposed to be part of Vista/7, but that fell off the feature list too. Sure, any program can store a binary file and have any data structure it wants in it, by why couldn't the OS offer more complex ways of storing data, beyond the simple heirarchy of the filesystem?

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  • Using Recursive SQL and XML trick to PIVOT(OK, concat) a "Document Folder Structure Relationship" table, works like MySQL GROUP_CONCAT

    - by Kevin Shyr
    I'm in the process of building out a Data Warehouse and encountered this issue along the way.In the environment, there is a table that stores all the folders with the individual level.  For example, if a document is created here:{App Path}\Level 1\Level 2\Level 3\{document}, then the DocumentFolder table would look like this:IDID_ParentFolderName1NULLLevel 121Level 232Level 3To my understanding, the table was built so that:Each proposal can have multiple documents stored at various locationsDifferent users working on the proposal will have different access level to the folder; if one user is assigned access to a folder level, she/he can see all the sub folders and their content.Now we understand from an application point of view why this table was built this way.  But you can quickly see the pain this causes the report writer to show a document link on the report.  I wasn't surprised to find the report query had 5 self outer joins, which is at the mercy of nobody creating a document that is buried 6 levels deep, and not to mention the degradation in performance.With the help of 2 posts (at the end of this post), I was able to come up with this solution:Use recursive SQL to build out the folder pathUse SQL XML trick to concat the strings.Code (a reminder, I built this code in a stored procedure.  If you copy the syntax into a simple query window and execute, you'll get an incorrect syntax error) Normal 0 false false false EN-US X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0in 5.4pt 0in 5.4pt; mso-para-margin-top:0in; mso-para-margin-right:0in; mso-para-margin-bottom:10.0pt; mso-para-margin-left:0in; line-height:115%; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} -- Get all folders and group them by the original DocumentFolderID in PTSDocument table;WITH DocFoldersByDocFolderID(PTSDocumentFolderID_Original, PTSDocumentFolderID_Parent, sDocumentFolder, nLevel)AS (-- first member      SELECT 'PTSDocumentFolderID_Original' = d1.PTSDocumentFolderID            , PTSDocumentFolderID_Parent            , 'sDocumentFolder' = sName            , 'nLevel' = CONVERT(INT, 1000000)      FROM (SELECT DISTINCT PTSDocumentFolderID                  FROM dbo.PTSDocument_DY WITH(READPAST)            ) AS d1            INNER JOIN dbo.PTSDocumentFolder_DY AS df1 WITH(READPAST)                  ON d1.PTSDocumentFolderID = df1.PTSDocumentFolderID      UNION ALL      -- recursive      SELECT ddf1.PTSDocumentFolderID_Original            , df1.PTSDocumentFolderID_Parent            , 'sDocumentFolder' = df1.sName            , 'nLevel' = ddf1.nLevel - 1      FROM dbo.PTSDocumentFolder_DY AS df1 WITH(READPAST)            INNER JOIN DocFoldersByDocFolderID AS ddf1                  ON df1.PTSDocumentFolderID = ddf1.PTSDocumentFolderID_Parent)-- Flatten out folder path, DocFolderSingleByDocFolderID(PTSDocumentFolderID_Original, sDocumentFolder)AS (SELECT dfbdf.PTSDocumentFolderID_Original            , 'sDocumentFolder' = STUFF((SELECT '\' + sDocumentFolder                                         FROM DocFoldersByDocFolderID                                         WHERE (PTSDocumentFolderID_Original = dfbdf.PTSDocumentFolderID_Original)                                         ORDER BY PTSDocumentFolderID_Original, nLevel                                         FOR XML PATH ('')),1,1,'')      FROM DocFoldersByDocFolderID AS dfbdf      GROUP BY dfbdf.PTSDocumentFolderID_Original) And voila, I use the second CTE to join back to my original query (which is now a CTE for Source as we can now use MERGE to do INSERT and UPDATE at the same time).Each part of this solution would not solve the problem by itself because:If I don't use recursion, I cannot build out the path properly.  If I use the XML trick only, then I don't have the originating folder ID info that I need to link to the document.If I don't use the XML trick, then I don't have one row per document to show in the report.I could conceivably do this in the report function, but I'd rather not deal with the beginning or ending backslash and how to attach the document name.PIVOT doesn't do strings and UNPIVOT runs into the same problem as the above.I'm excited that each version of SQL server provides us new tools to solve old problems and/or enables us to solve problems in a more elegant wayThe 2 posts that helped me along:Recursive Queries Using Common Table ExpressionHow to use GROUP BY to concatenate strings in SQL server?

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  • Cascading S3 Sink Tap not being deleted with SinkMode.REPLACE

    - by Eric Charles
    We are running Cascading with a Sink Tap being configured to store in Amazon S3 and were facing some FileAlreadyExistsException (see [1]). This was only from time to time (1 time on around 100) and was not reproducable. Digging into the Cascading codem, we discovered the Hfs.deleteResource() is called (among others) by the BaseFlow.deleteSinksIfNotUpdate(). Btw, we were quite intrigued with the silent NPE (with comment "hack to get around npe thrown when fs reaches root directory"). From there, we extended the Hfs tap with our own Tap to add more action in the deleteResource() method (see [2]) with a retry mechanism calling directly the getFileSystem(conf).delete. The retry mechanism seemed to bring improvement, but we are still sometimes facing failures (see example in [3]): it sounds like HDFS returns isDeleted=true, but asking directly after if the folder exists, we receive exists=true, which should not happen. Logs also shows randomly isDeleted true or false when the flow succeeds, which sounds like the returned value is irrelevant or not to be trusted. Can anybody bring his own S3 experience with such a behavior: "folder should be deleted, but it is not"? We suspect a S3 issue, but could it also be in Cascading or HDFS? We run on Hadoop Cloudera-cdh3u5 and Cascading 2.0.1-wip-dev. [1] org.apache.hadoop.mapred.FileAlreadyExistsException: Output directory s3n://... already exists at org.apache.hadoop.mapreduce.lib.output.FileOutputFormat.checkOutputSpecs(FileOutputFormat.java:132) at com.twitter.elephantbird.mapred.output.DeprecatedOutputFormatWrapper.checkOutputSpecs(DeprecatedOutputFormatWrapper.java:75) at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:923) at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:882) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:396) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1278) at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:882) at org.apache.hadoop.mapred.JobClient.submitJob(JobClient.java:856) at cascading.flow.hadoop.planner.HadoopFlowStepJob.internalNonBlockingStart(HadoopFlowStepJob.java:104) at cascading.flow.planner.FlowStepJob.blockOnJob(FlowStepJob.java:174) at cascading.flow.planner.FlowStepJob.start(FlowStepJob.java:137) at cascading.flow.planner.FlowStepJob.call(FlowStepJob.java:122) at cascading.flow.planner.FlowStepJob.call(FlowStepJob.java:42) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.j [2] @Override public boolean deleteResource(JobConf conf) throws IOException { LOGGER.info("Deleting resource {}", getIdentifier()); boolean isDeleted = super.deleteResource(conf); LOGGER.info("Hfs Sink Tap isDeleted is {} for {}", isDeleted, getIdentifier()); Path path = new Path(getIdentifier()); int retryCount = 0; int cumulativeSleepTime = 0; int sleepTime = 1000; while (getFileSystem(conf).exists(path)) { LOGGER .info( "Resource {} still exists, it should not... - I will continue to wait patiently...", getIdentifier()); try { LOGGER.info("Now I will sleep " + sleepTime / 1000 + " seconds while trying to delete {} - attempt: {}", getIdentifier(), retryCount + 1); Thread.sleep(sleepTime); cumulativeSleepTime += sleepTime; sleepTime *= 2; } catch (InterruptedException e) { e.printStackTrace(); LOGGER .error( "Interrupted while sleeping trying to delete {} with message {}...", getIdentifier(), e.getMessage()); throw new RuntimeException(e); } if (retryCount == 0) { getFileSystem(conf).delete(getPath(), true); } retryCount++; if (cumulativeSleepTime > MAXIMUM_TIME_TO_WAIT_TO_DELETE_MS) { break; } } if (getFileSystem(conf).exists(path)) { LOGGER .error( "We didn't succeed to delete the resource {}. Throwing now a runtime exception.", getIdentifier()); throw new RuntimeException( "Although we waited to delete the resource for " + getIdentifier() + ' ' + retryCount + " iterations, it still exists - This must be an issue in the underlying storage system."); } return isDeleted; } [3] INFO [pool-2-thread-15] (BaseFlow.java:1287) - [...] at least one sink is marked for delete INFO [pool-2-thread-15] (BaseFlow.java:1287) - [...] sink oldest modified date: Wed Dec 31 23:59:59 UTC 1969 INFO [pool-2-thread-15] (HiveSinkTap.java:148) - Now I will sleep 1 seconds while trying to delete s3n://... - attempt: 1 INFO [pool-2-thread-15] (HiveSinkTap.java:130) - Deleting resource s3n://... INFO [pool-2-thread-15] (HiveSinkTap.java:133) - Hfs Sink Tap isDeleted is true for s3n://... ERROR [pool-2-thread-15] (HiveSinkTap.java:175) - We didn't succeed to delete the resource s3n://... Throwing now a runtime exception. WARN [pool-2-thread-15] (Cascade.java:706) - [...] flow failed: ... java.lang.RuntimeException: Although we waited to delete the resource for s3n://... 0 iterations, it still exists - This must be an issue in the underlying storage system. at com.qubit.hive.tap.HiveSinkTap.deleteResource(HiveSinkTap.java:179) at com.qubit.hive.tap.HiveSinkTap.deleteResource(HiveSinkTap.java:40) at cascading.flow.BaseFlow.deleteSinksIfNotUpdate(BaseFlow.java:971) at cascading.flow.BaseFlow.prepare(BaseFlow.java:733) at cascading.cascade.Cascade$CascadeJob.call(Cascade.java:761) at cascading.cascade.Cascade$CascadeJob.call(Cascade.java:710) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619)

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  • How to treat compressed folders as files using ShellObject from WindowsAPICodePack?

    - by JustABill
    I am trying to implement a filesystem browser using the WindowsAPICodePack for C# (.Net 4), and it works pretty well, except that the ShellObject system treats zip files as folders, whereas I'd prefer they be files. Is there some way I can force it to work this way? The low-level interop it does is beyond me. As far as I can tell, internally it asks if the item is a Folder or a Filesystem element. It then uses this (and some type checks) to figure out what it actually is. Is it safe to force it to treat it as a file if it's Compressed? Or do I have to do something else?

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  • Display images from server in listview

    - by user1451610
    My images are stored in a folder "Albums" and address for those images are "/Albums/..". i want to concatenate two strings in imageurl but its not working and listview is not displaying images:here is my code: <asp:ListView runat="server" ID="listView" OnItemDataBound="ContactsListView_ItemDataBound"> <ItemTemplate> <asp:Image ID="img" ImageUrl= '<%# String.Concat("/", Eval("PictureLink")) %>' runat="server" /> </ItemTemplate> </asp:ListView> any help?

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  • how to import the blog.py(i import the 'blog' folder)

    - by zjm1126
    my dir location,i am in a.py: my_Project |----blog |-----__init__.py |-----a.py |-----blog.py when i 'from blog import something' in a.py , it show error: from blog import BaseRequestHandler ImportError: cannot import name BaseRequestHandler i think it import the blog folder,not the blog.py so how to import the blog.py

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  • Why can't my Apache see my media folder?

    - by alex
    Alias /media/ /home/matt/repos/hello/media <Directory /home/matt/repos/hello/media> Options -Indexes Order deny,allow Allow from all </Directory> WSGIScriptAlias / /home/matt/repos/hello/wsgi/django.wsgi /media is my directory. When I go to mydomain.com/media/, it says 403 Forbidden. And, the rest of my site doesn't work because all static files are 404s. Why? Edit: hello is my project folder

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  • Problem in iterating sharepoint folder content

    - by Royson
    Hi, I am trying to access Folder from Document Library using web services in C#. I am using SiteData's EnumerateFolder() method to get sub folders and files. But the method gives me only 3 properties for each entry. IsFolder Url Last modified date So how can we get 'Modified By' field value. Or there is another solution for enumerating folders and subfolders. Thanks.

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  • How to set the rpmbuild destination folder

    - by mkotechno
    I noticed rpmbuild (-bb and --buildroot options) creates the .rpm in different locations depending of what OS are you using: GNU/Linux Ubuntu <= 9.04: /usr/src/rpm/... GNU/Linux Ubuntu = 9.10: /home/rpmbuild/... GNU/Linux Fedora: /usr/src/redhat/... So how can I set manually the destination folder for all OS?

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  • IIS7 folder permissions for web application

    - by Andrew
    I am using windows authentication without impersonation on my company's intranet website with IIS7. Under IIS7, what account is used to access the folder which contains my web app using these settings? Would it be IIS_IUSRS? Or NETWORK SERVICE? Or another I don't know about?

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