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  • Formatting with echo command

    - by johannix
    The actual situation is a bit complicated, but the issue I'm running into is that I have an echo command within an eval command. Like so: $ eval echo 'keep my spacing' keep my spacing $ echo 'keep my spacing' keep my spacing I was wondering how I could keep eval from stripping my spacing so that the first command prints out the same message as the second...

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  • What size of folders show ls -la

    - by Bkmz
    Hi. I'm interesting in information what show me output ls -la in linux. So, default size is 4K. But if there are a lot of files, maybe with zero size, such as PHP sessions =), the size != 4K. What showing me ls -la? And after, when i clean this folder i see tha last max size.

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  • Unescpaing huge single-line string on Linux

    - by Lajos Nagy
    I ended up with a huge, single line string literal (don't ask me how) where everything is escaped (mostly), including new lines and double quotes. Problem is, I want the original string. The string is huge so I'm not even sure how to begin. Here's what I have: "This\n is \"nice\",\nain\'t it?" This is what I want: This is "nice", ain't it? Again, the problem is that other shell sensitive stuff is not escaped (like $, or !), and that the string is couple of megabytes.

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  • SED, using variables and in with an array

    - by S1syphus
    What I am trying to do is run the sed on multiple files in the directory Server_Upload, using variables: AB${count} Corresponds, to some variables I made that look like: echo " AB1 = 2010-10-09Three " echo " AB2 = 2009-3-09Foo " echo " AB3 = Bar " And these correspond to each line which contains a word in master.ta, that needs changing in all the text files in Server_Upload. If you get what I mean... great, I have tried to explain it the best I can, but if you are still miffed I'll give it another go as I found it really hard to convey what I mean. cd Server_Upload for fl in *.UP; do mv $fl $fl.old done count=1 saveIFS="$IFS" IFS=$'\n' array=($(<master.ta)) IFS="$saveIFS" for i in "${array[@]}" do sed "s/$i/AB${count}/g" $fl.old > $fl (( count++ )) done It runs, doesn't give me any errors, but it doesn't do what I want, so any ideas?

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  • Find directories not containing a specific directory

    - by Morgan ARR Allen
    Been searching around for a bit and cannot find a solution for this one. I guess I'm looking for a leaf-directory by name. In this example I'd like to get a list of directories call 'modules' that do NOT have a subdirectory called module. modules/package1/modules/spackage1 modules/package1/modules/spackage2 modules/package1/modules/spackage3/modules modules/package1/modules/spackage3/modules/spackage1 modules/package2/modules/ The list I desire would contain modules/package1/modules/spackage3/modules/ modules/package2/modules/ All the directories named module that do not have a subdirectory called module I started with trying something this with no luck find . -name modules \! -exec sh -c 'find -name modules' \; -exec works on exit code, okay lets pass the count as exit code find . -name modules -exec sh -c 'exit $(find {} -name modules|grep -n ""|tail -n1|cut -d: -f1)' \; This should take the count of each subdirectory called modules and exit with it. No such love.

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  • Sort command not working as expected

    - by user964689
    If anybody can help me to write a loop to iterate over files in a folder it would save me a huge amount of time. I think it must be quite a simple solution ,but I currently don't know how to nest a loop within a loop. So far I have this script: cd /folderlocation/ for i in `</textfile_containing_lines_to_iterate_through` do #size=`echo $i | perl -nE '/:([\d-]+)/ && say abs(eval $1)'` #echo "$size" zcat dataset | head -n 18 > temp"$i".vcf tabix dataset $i >> temp"$i".vcf vcftools --window-pi 1000000 --vcf temp10individuals"$i".vcf >> run_summary.txt cat out.windowed.pi >> outputfile_2 #rm temp* done grep -v "PI" outputfile_2 > outputfile rm outputfile_2 I need to expand this so that the script will run multiple times, through all of the 'textfiles_containing_lines_to_iterate_through'. Currently I change the name of the textfile manually each time and re-run the script. So I'd need a loop that does this for file in folder, and also that uses the name of the file as part of the outputfile name so that I can match an output file to an inputfile. Any help would be really useful and greatly appreciated! Many thanks in advance.

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  • Can this be done by sed?

    - by SpawnCxy
    Hiall,I need to deal with a file which seems as follows: 1234 4343 5345345 53453 4343 And what I want to do is to execute follow command to the number of each line: grep $num1 ./somepath #get num1_res Then write $num1 and $num1_res to another file which will be: 1234 32 4343 234 5345345 349 53453 78 #...etc Any good solution by sed?Or some other simple way? Thanks.

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  • CVS branch name from tag name

    - by Jamie
    I have a number of modules in CVS with different tags. How would I go about getting the name of the branch these tagged files exist on? I've tried checking out a file from the module using cvs co -r TAG and then doing cvs log but it appears to give me a list of all of the branches that the file exists on, rather than just a single branch name. Also this needs to be an automated process, so I can't use web based tools like viewvc to gather this info.

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  • I have an Errno 13 Permission denied with subprocess in python

    - by wDroter
    The line with the issue is ret=subprocess.call(shlex.split(cmd)) cmd = /usr/share/java -cp pig-hadoop-conf-Simpsons:lib/pig-0.8.1-cdh3u1-core.jar:lib/hadoop-core-0.20.2-cdh3u1.jar org.apache.pig.Main -param func=cat -param from =foo.txt -x mapreduce fsFunc.pig The error is. File "./run_pig.py", line 157, in process ret=subprocess.call(shlex.split(cmd)) File "/usr/lib/python2.7/subprocess.py", line 493, in call return Popen(*popenargs, **kwargs).wait() File "/usr/lib/python2.7/subprocess.py", line 679, in __init__ errread, errwrite) File "/usr/lib/python2.7/subprocess.py", line 1249, in _execute_child raise child_exception OSError: [Errno 13] Permission denied Let me know if any more info is needed. Any help is appreciated. Thanks.

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  • How do I can linux flock command to prevent another root process deleting a file?

    - by Danmaxis
    Hello there, I would like to prevent one of my root process from deleting a certaing file. So I came across the flock command, it seems to fit my need, but I didnt get its sintax. If I only indicate a shared lock, it doesnt work: flock -s "./file.xml" If I add a timeout parameter, it still doesnt work flock -s -w5 "./file.xml" It seems that way, it fits in flock [-sxun][-w #] fd# way. (What is this fd# parameter?) So, I tried the flock [-sxon][-w #] file [-c] command Using flock -s -w5 "./file.xml" -c "tail -3 ./file.xml" and it worked, tail command at ./file.xml was executed. But I would like to know, does the lock end after the command or does it last 5 seconds after the end of the command execution? My main question is, how can I prevent another root process deleting a file in linux?

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  • How can I change the color of xterm titlebar?

    - by tellus55
    Hi, I want to automatically change the color of my xterm titlebar. I would like to put code into my .bashrc so that the color changes automatically (say depending on the directory I am in). I know how to change the prompt and also how to change the text displayed in the titlebar. My question is about the color of the titlebar. Right now the color is orangish. I am using Ubuntu. Thanks

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  • Using terminal to record/save a data stream

    - by jonhurlock
    I want to be able to save a data stream which i am returning using the curl command. I have tried using the cat command, and piping it the curl command, however i'm doing it wrong. The code im currently using is: cat > file.txt | curl http://datastream.com/data Any help would be appreciated.

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  • Best Practice: User generated HTML cleaning

    - by Martin
    I'm coding a WYSIWYG editor width designMode="on" on a iframe. The editor works fine and i store the code as is in the database. Before outputing the html i need to "clean" with php on the server-side to avoid cross-site-scripting and other scary things. Is there some sort of best practice on how to do this? What tags can be dangerous? UPDATE: Typo fixed, it's What You See Is What You Get. Nothing new :)

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  • cd Terminal at a given directory after running a Python script?

    - by Dave Everitt
    I'm working on a simple Python script that can use subprocess and/or os to execute some commands, which is working fine. However, when the script exits I'd like to cd the actual Terminal (in this case OS X) so on exit, the new files are ready to use in the directory where the have been created. All the following (subprocess.Popen, os.system, os.chdir) can do what I want from within the script (i.e. they execute stuff in the target directory) but on exit leave the Terminal at the script's own directory, not the target directory. I'd like to avoid writing a shell script to temporary file just to achieve this, if this is at all possible anyway?

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  • How do I fix my Ruby installation

    - by Robin Fisher
    Hi all, I rather cleverly (or not in hindsight) installed RVM, which kept hanging whilst compiling Rubies. I have removed the .rvm directory but now my system has reverted to Ruby 1.8.7 i.e. when I type: ruby -v which ruby they both point to 1.8.7. How do I get the ruby command to point to my 1.9.1 installation, which is located in /usr/local/lib/ruby/1.9.1? I'm on OSX 10.6. Thanks Robin

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  • escape from a linux cli for loop

    - by aidan
    I'm doing something like this: for f in `find -iname '*.html'`; do scp $f remoteserver:$f; done; I've got through about 3 of the 1000 files and I've decided I want to abort the operation. CTRL+C only escapes the SCP login prompt and takes me to the next one, rather than escaping the for loop. Is there a better way than hitting CTRL+C 9997 times? Thanks!

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