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  • def constrainedMatchPair(firstMatch,secondMatch,length):

    - by smart
    matches of a key string in a target string, where one of the elements of the key string is replaced by a different element. For example, if we want to match ATGC against ATGACATGCACAAGTATGCAT, we know there is an exact match starting at 5 and a second one starting at 15. However, there is another match starting at 0, in which the element A is substituted for C in the key, that is we match ATGC against the target. Similarly, the key ATTA matches this target starting at 0, if we allow a substitution of G for the second T in the key string. consider the following steps. First, break the key string into two parts (where one of the parts could be an empty string). Let's call them key1 and key2. For each part, use your function from Problem 2 to find the starting points of possible matches, that is, invoke starts1 = subStringMatchExact(target,key1) and starts2 = subStringMatchExact(target,key2) The result of these two invocations should be two tuples, each indicating the starting points of matches of the two parts (key1 and key2) of the key string in the target. For example, if we consider the key ATGC, we could consider matching A and GC against a target, like ATGACATGCA (in which case we would get as locations of matches for A the tuple (0, 3, 5, 9) and as locations of matches for GC the tuple (7,). Of course, we would want to search over all possible choices of substrings with a missing element: the empty string and TGC; A and GC; AT and C; and ATG and the empty string. Note that we can use your solution for Problem 2 to find these values. Once we have the locations of starting points for matches of the two substrings, we need to decide which combinations of a match from the first substring and a match of the second substring are correct. There is an easy test for this. Suppose that the index for the starting point of the match of the first substring is n (which would be an element of starts1), and that the length of the first substring is m. Then if k is an element of starts2, denoting the index of the starting point of a match of the second substring, there is a valid match with one substitution starting at n, if n+m+1 = k, since this means that the second substring match starts one element beyond the end of the first substring. finally the question is Write a function, called constrainedMatchPair which takes three arguments: a tuple representing starting points for the first substring, a tuple representing starting points for the second substring, and the length of the first substring. The function should return a tuple of all members (call it n) of the first tuple for which there is an element in the second tuple (call it k) such that n+m+1 = k, where m is the length of the first substring.

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  • pyramid traversal resource url no attribute __name__

    - by Santana
    So I have: resources.py: def _add(obj, name, parent): obj.__name__ = name obj.__parent__ = parent return obj class Root(object): __parent__ = __name__ = None def __init__(self, request): super(Root, self).__init__() self.request = request self.collection = request.db.post def __getitem__(self, key): if u'profile' in key: return Profile(self.request) class Profile(dict): def __init__(self, request): super(Profile, self).__init__() self.__name__ = u'profile' self.__parent__ = Root self.collection = request.db.posts def __getitem__(self, name): post = Dummy(self.collection.find_one(dict(username=name))) return _add(post, name, self) and I'm using MongoDB and pyramid_mongodb views.py: @view_config(context = Profile, renderer = 'templates/mytemplate.pt') def test_view(request): return {} and in mytemplate.pt: <p tal:repeat='item request.context'> ${item} </p> I can echo what's in the database (I'm using mongodb), but when I provided a URL for each item using resource_url() <p tal:repeat='item request.context'> <a href='${request.resource_url(item)}'>${item}</a> </p> I got an error: 'dict' object has no attribute '__name__', can someone help me?

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  • Is there a functional way to do this?

    - by Ishpeck
    def flattenList(toFlatten): final=[] for el in toFlatten: if isinstance(el, list): final.extend(flattenList(el)) else: final.append(el) return final When I don't know how deeply the lists will nest, this is the only way I can think to do this. 2

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  • Making only one task run at a time in celerybeat

    - by Noufal Ibrahim
    I have a task which I execute once a minute using celerybeat. It works fine. Sometimes though, the task takes a few seconds more than a minute to run because of which two instances of the task run. This leads to some race conditions that mess things up. I can (and probably should) fix my task to work properly but I wanted to know if celery has any builtin ways to ensure this. My cursory Google searches and RTFMs yielded no results.

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  • Emptying the datastore in GAE

    - by colwilson
    I know what you're thinking, 'O not that again!', but here we are since Google have not yet provided a simpler method. I have been using a queue based solution which worked fine: import datetime from models import * DELETABLE_MODELS = [Alpha, Beta, AlphaBeta] def initiate_purge(): for e in config.DELETABLE_MODELS: deferred.defer(delete_entities, e, 'purging', _queue = 'purging') class NotEmptyException(Exception): pass def delete_entities(e, queue): try: q = e.all(keys_only=True) db.delete(q.fetch(200)) ct = q.count(1) if ct > 0: raise NotEmptyException('there are still entities to be deleted') else: logging.info('processing %s completed' % queue) except Exception, err: deferred.defer(delete_entities, e, then, queue, _queue = queue) logging.info('processing %s deferred: %s' % (queue, err)) All this does is queue a request to delete some data (once for each class) and then if the queued process either fails or knows there is still some stuff to delete, it re-queues itself. This beats the heck out of hitting the refresh on a browser for 10 minutes. However, I'm having trouble deleting AlphaBeta entities, there are always a few left at the end. I think because it contains Reference Properties: class AlphaBeta(db.Model): alpha = db.ReferenceProperty(Alpha, required=True, collection_name='betas') beta = db.ReferenceProperty(Beta, required=True, collection_name='alphas') I have tried deleting the indexes relating to these entity types, but that did not make any difference. Any advice would be appreciated please.

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  • All minimum spanning trees implementation

    - by russtbarnacle
    I've been looking for an implementation (I'm using networkx library.) that will find all the minimum spanning trees (MST) of an undirected weighted graph. I can only find implementations for Kruskal's Algorithm and Prim's Algorithm both of which will only return a single MST. I've seen papers that address this problem (such as http://fano.ics.uci.edu/cites/Publication/Epp-TR-95-50.html) but my head tends to explode someway through trying to think how to translate it to code. In fact i've not been able to find an implementation in any language!

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  • Looping through a directory on the web and displaying its contents (files and other directories) via

    - by al jaffe
    In the same vein as http://stackoverflow.com/questions/2593399/process-a-set-of-files-from-a-source-directory-to-a-destination-directory-in-pyth I'm wondering if it is possible to create a function that when given a web directory it will list out the files in said directory. Something like... files[] for file in urllib.listdir(dir): if file.isdir: # handle this as directory else: # handle as file I assume I would need to use the urllib library, but there doesn't seem to be an easy way of doing this, that I've seen at least.

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  • google contacts api service account oauth2.0 sub user

    - by user3709507
    I am trying to use the Google Contacts API to connect to a user's contact information, on my Google apps domain. Generating an access_token using the gdata api's ContactsService clientlogin function while using the API key for my project works fine, but I would prefer to not store the user's credentials, and from the information I have found that method uses OAuth1.0 So, to use OAuth2.0 I have: Generated a Service Account in the developer's console for my project Granted access to the service account for the scope of https://www.google.com/m8/feeds/ in the Google apps domain admin panel Attempted to generate credentials using SignedJwtAssertionCredentials: credentials = SignedJwtAssertionCredentials( service_account_name=service_account_email, private_key=key_from_p12_file, scope='https://www.google.com/m8/feeds/', sub=user_email') The problem I am running into is that attempting to generate an access token using this method fails. It succeeds in generating the token when I remove the sub parameter, but then that token fails when I try to fetch the user's contacts. Does anyone know why this might be happening?

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  • Why doesn't this list comprehension do what I expect it to do?

    - by Az
    The original list project_keys = sorted(projects.keys()) is [101, 102, 103, 104, 105, 106, 107, 108, 109, 110] where the following projects were deemed invalid this year: 108, 109, 110. Thus: for project in projects.itervalues(): # The projects dictionary is mapped to the Project class if project.invalid: # Where invalid is a Bool parameter in the Project class project_keys.remove(project.proj_id) print project_keys This will return a list of integers (which are project id's) as such: [101, 102, 103, 104, 105, 106, 107] Sweet. Now, I wanted it try the same thing using a list comprehension. project_keys = [project_keys.remove(project.proj_id) for project in projects.itervalues() if project.invalid print project_keys This returns: [None, None, None] So I'm populating a list with the same number as the removed elements but they're Nones? Can someone point out what I'm doing wrong? Additionally, why would I use a list comprehension over the for-if block at the top? Conciseness? Looks nicer?

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  • Can you change/redirect a django form's function by passing in your own function?

    - by Derek
    I'm dealing with django-paypal and want to change the button src images. So I went the the conf.py file in the source and edited the src destination. However, I really want to leave the source alone, and I noticed that the class PayPalPaymentsForm(forms.Form): has def get_image(self): return { (True, self.SUBSCRIBE): SUBSCRIPTION_SANDBOX_IMAGE, (True, self.BUY): SANDBOX_IMAGE, (True, self.DONATE): DONATION_SANDBOX_IMAGE, (False, self.SUBSCRIBE): SUBSCRIPTION_IMAGE, (False, self.BUY): IMAGE, (False, self.DONATE): DONATION_IMAGE, }[TEST, self.button_type] which handles all the image src destinations. Since changing this def in the source is worse than changing conf, I was wondering if there was a way to pass in customized defs you make like passing in initial arguments in forms? This way no source code is changed, and I can customize the get_image def as much as I need. passing in def something like this? def get_image(self): .... .... paypal = { 'amount': 10, 'item_name': 'test1', 'item_number': 'test1_slug', # PayPal wants a unique invoice ID 'invoice': str(uuid.uuid4()), } form = PayPalPaymentsForm(initial=paypal, get_image) Thanks!

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  • Google App Engine - Document Editor Creation/Tap Into Google Docs?

    - by Josh Patton
    What is the best way to create a custom document editor in GAE? I'm making a website meant for a School Robotics Club (With support for any other organization - DRY). We currently use Google services for online collaboration, I'm wondering if there is a way to tap into Google Docs and allow users to edit a Google Document without using Google Accounts or the Google Doc interface. If that is not possible (I've researched and I don't think it is), what is the best way to make a document editor? I want it completely on the website I'm creating, so I'm assuming just some javascript editor like TinyMCE + Ajax + Datastore. Is their anything that replicates Google Doc's/Microsoft Offices's/OpenOffice.org's feature set as far as fonts, spacing, alignment, justification, etc.?

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  • ProgrammingError: (1146, "Table 'test_<DB>.<TABLE>' doesn't exist") when running unit test for Djang

    - by abigblackman
    I'm running a unit test using the Django framework and get this error. Running the actual code does not have this problem, running the unit tests creates a test database on the fly so I suspect the issue lies there. The code that throws the error looks like this member = Member.objects.get(email=email_address) and the model looks like class Member(models.Model): member_id = models.IntegerField(primary_key=True) created_on = models.DateTimeField(editable=False, default=datetime.datetime.utcnow()) flags = models.IntegerField(default=0) email = models.CharField(max_length=150, blank=True) phone = models.CharField(max_length=150, blank=True) country_iso = models.CharField(max_length=6, blank=True) location_id = models.IntegerField(null=True, blank=True) facebook_uid = models.IntegerField(null=True, blank=True) utc_offset = models.IntegerField(null=True, blank=True) tokens = models.CharField(max_length=3000, blank=True) class Meta: db_table = u'member' there's nothing too odd there i can see. the user running the tests has the same permissions to the database server as the user that runs the website where else can I look to see what's going wrong, why is this table not being created?

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  • How do you automatically remove the preview window after autocompletion in Vim?

    - by Ben Davini
    I'm using omnifunc=pythoncomplete. When autocompleting a word (e.g., os.), I get the list of eligible class members and functions, as expected, as well as a scratch buffer preview window with documentation about the selected member or function. This is great, but after selecting the function I want, the preview window remains. I can get rid of it with ":pc", but I'd like it just to automatically disappear after I've selected my function, a la Eclipse. I've played around with "completeopt" but to no avail.

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  • Import Error: No module named testrunner

    - by JiL
    I followed this to add zc.recipe.testrunner to my buildout. I can run buildout successfully but when I run bin/test, I get: ImportError: No module named testrunner I have zope.testrunner-4.0.4-py2.4.egg in /usr/local/lib/python2.4/site-packages I also pinned zope.testrunner = 4.0.4 zc.recipe.testruner = 1.4.0 zc.recipe.egg = 1.3.2 When I ran buildout, I used -vvv and I got: ... Installing 'zc.recipe.testrunner'. We have the distribution that satisfies 'zc.recipe.testrunner==1.4.0'. Egg from site-packages: z3c.recipe.scripts 1.0.1 Egg from site-packages: zope.testrunner 4.0.4 Egg from site-packages: zope.interface 3.8.0 Egg from site-packages: zope.exceptions 3.7.1 ... We have the distribution that satisfies 'zope.testrunner==4.0.4'. Egg from site-packages: zope.testrunner 4.0.4 Adding required 'zope.interface' required by zope.testrunner 4.0.4. We have a develop egg: zope.interface 0.0 Adding required 'zope.exceptions' required by zope.testrunner 4.0.4. We have a develop egg: zope.exceptions 0.0 ... Why is it I get an ImportError? Is zope.testrunner not installed correctly?

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  • New wxpython controls not displaying until resize

    - by acrosman
    I have created a custom control (based on a panel) in wxPython that provides a list of custom controls on panel within it. The user needs to be able to add rows at will and have those rows displayed. I'm having trouble getting the new controls to actually appear after they are added. I know they are present, because they appear after a resize of the frame, or if I add them before Show() is called on the frame. I've convinced myself it's something basic, but I can't find the mistake. The add function looks like this: def addRow(self, id, reference, page, title, note): newRow = NoteListRow(self.listPanel, id, reference, page, title, note) self.listSizer.Add(newRow, flag=wx.EXPAND | wx.LEFT) self.rows.append(newRow) if len(self.rows) == 1: self.highliteRow(newRow) self.Refresh() self.Update() return newRow I assume I'm missing something about how refresh and update are supposed to behave, so even a good extended reference on those would likely be helpful.

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  • Does urllib2.urlopen() actually fetch the page?

    - by beagleguy
    hi all, I was condering when I use urllib2.urlopen() does it just to header reads or does it actually bring back the entire webpage? IE does the HTML page actually get fetch on the urlopen call or the read() call? handle = urllib2.urlopen(url) html = handle.read() The reason I ask is for this workflow... I have a list of urls (some of them with short url services) I only want to read the webpage if I haven't seen that url before I need to call urlopen() and use geturl() to get the final page that link goes to (after the 302 redirects) so I know if I've crawled it yet or not. I don't want to incur the overhead of having to grab the html if I've already parsed that page. thanks!

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  • django join-like expansion of queryset

    - by jimbob
    I have a list of Persons each which have multiple fields that I usually filter what's upon, using the object_list generic view. Each person can have multiple Comments attached to them, each with a datetime and a text string. What I ultimately want to do is have the option to filter comments based on dates. class Person(models.Model): name = models.CharField("Name", max_length=30) ## has ~30 other fields, usually filtered on as well class Comment(models.Model): date = models.DateTimeField() person = models.ForeignKey(Person) comment = models.TextField("Comment Text", max_length=1023) What I want to do is get a queryset like Person.objects.filter(comment__date__gt=date(2011,1,1)).order_by('comment__date') send that queryset to object_list and be able to only see the comments ordered by date with only so many objects on a page. E.g., if "Person A" has comments 12/3/11, 1/2/11, 1/5/11, "Person B" has no comments, and person C has a comment on 1/3, I would see: "Person A", 1/2 - comment "Person C", 1/3 - comment "Person A", 1/5 - comment I would strongly prefer not to have to switch to filtering based on Comments.objects.filter(), as that would make me have to largely repeat large sections of code in the both the view and template. Right now if I tried executing the following command, I will get a queryset returning (PersonA, PersonC, PersonA), but if I try rendering that in a template each persons comment_set will contain all their comments even if they aren't in the date range. Ideally they're would be some sort of functionality where I could expand out a Person queryset's comment_set into a larger queryset that can be sorted and ordered based on the comment and put into a object_list generic view. This normally is fairly simple to do in SQL with a JOIN, but I don't want to abandon the ORM, which I use everywhere else.

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  • how do i insert spaces into a string using the range function?

    - by user1319219
    If I have a string, for example which reads: 'Hello how are you today Joe' How am I able to insert spaces into it at regular intervals? So for example I want to insert spaces into it using the range function in these steps: range(0,27,2). So it will look like this: 'He lo ho w ar e yo u to da y Jo e' It now has a space at every 2nd index going up to it's end. How do I do this does anyone know? thanks.

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