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  • strange chi-square result using scikit_learn with feature matrix

    - by user963386
    I am using scikit learn to calculate the basic chi-square statistics(sklearn.feature_selection.chi2(X, y)): def chi_square(feat,target): """ """ from sklearn.feature_selection import chi2 ch,pval = chi2(feat,target) return ch,pval chisq,p = chi_square(feat_mat,target_sc) print(chisq) print("**********************") print(p) I have 1500 samples,45 features,4 classes. The input is a feature matrix with 1500x45 and a target array with 1500 components. The feature matrix is not sparse. When I run the program and I print the arrray "chisq" with 45 components, I can see that the component 13 has a negative value and p = 1. How is it possible? Or what does it mean or what is the big mistake that I am doing? I am attaching the printouts of chisq and p: [ 9.17099260e-01 3.77439701e+00 5.35004211e+01 2.17843312e+03 4.27047184e+04 2.23204883e+01 6.49985540e-01 2.02132664e-01 1.57324454e-03 2.16322638e-01 1.85592258e+00 5.70455805e+00 1.34911126e-02 -1.71834753e+01 1.05112366e+00 3.07383691e-01 5.55694752e-02 7.52801686e-01 9.74807972e-01 9.30619466e-02 4.52669897e-02 1.08348058e-01 9.88146259e-03 2.26292358e-01 5.08579194e-02 4.46232554e-02 1.22740419e-02 6.84545170e-02 6.71339545e-03 1.33252061e-02 1.69296016e-02 3.81318236e-02 4.74945604e-02 1.59313146e-01 9.73037448e-03 9.95771327e-03 6.93777954e-02 3.87738690e-02 1.53693158e-01 9.24603716e-04 1.22473138e-01 2.73347277e-01 1.69060817e-02 1.10868365e-02 8.62029628e+00] ********************** [ 8.21299526e-01 2.86878266e-01 1.43400668e-11 0.00000000e+00 0.00000000e+00 5.59436980e-05 8.84899894e-01 9.77244281e-01 9.99983411e-01 9.74912223e-01 6.02841813e-01 1.26903019e-01 9.99584918e-01 1.00000000e+00 7.88884155e-01 9.58633878e-01 9.96573548e-01 8.60719653e-01 8.07347364e-01 9.92656816e-01 9.97473024e-01 9.90817144e-01 9.99739526e-01 9.73237195e-01 9.96995722e-01 9.97526259e-01 9.99639669e-01 9.95333185e-01 9.99853998e-01 9.99592531e-01 9.99417113e-01 9.98042114e-01 9.97286030e-01 9.83873717e-01 9.99745466e-01 9.99736512e-01 9.95239765e-01 9.97992843e-01 9.84693908e-01 9.99992525e-01 9.89010468e-01 9.64960636e-01 9.99418323e-01 9.99690553e-01 3.47893682e-02]

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  • uWSGI with Cherokee: first steps

    - by Steve
    Has anyone tried using uWSGI with Cherokee? Can you share your experiences and what documents you relied upon the most? I am trying to get started from the documentation on both (uWSGI and Cherokee) websites. Nothing works yet. I am using Ubuntu 10.04.

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  • Loading url with cyrillic symbols

    - by Ockonal
    Hi guys, I have to load some url with cyrillic symbols. My script should work with this: http://wincode.org/%D0%BF%D1%80%D0%BE%D0%B3%D1%80%D0%B0%D0%BC%D0%BC%D0%B8%D1%80%D0%BE%D0%B2%D0%B0%D0%BD%D0%B8%D0%B5/ If I'll use this in browser it would replaced into normal symbols, but urllib code fails with 404 error. How to decode correctly this url? When I'm using that url directly in code, like address = 'that address', it works perfect. But I used parsing page for getting this url. I have a list of urls which contents cyrillic. Maybe they have uncorrect encoding? Here is more code: requestData = urllib2.Request( %SOME_ADDRESS%, None, {"User-Agent": user_agent}) requestHandler = pageHandler.open(requestData) pageData = requestHandler.read().decode('utf-8') soupHandler = BeautifulSoup(pageData) topicLinks = [] for postBlock in soupHandler.findAll('a', href=re.compile('%SOME_REGEXP%')): topicLinks.append(postBlock['href']) postAddress = choice(topicLinks) postRequestData = urllib2.Request(postAddress, None, {"User-Agent": user_agent}) postHandler = pageHandler.open(postRequestData) postData = postHandler.read() File "/usr/lib/python2.6/urllib2.py", line 518, in http_error_default raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) urllib2.HTTPError: HTTP Error 404: Not Found

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  • Splitting a person's name into forename and surname

    - by Nick
    ok so basically I am asking the question of their name I want this to be one input rather than Forename and Surname. Now is there any way of splitting this name? and taking just the last word from the "Sentence" e.g. name = "Thomas Winter" print name.split() and what would be output is just "Winter"

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  • How do I store multiple copies of the same field in Django?

    - by Alistair
    I'm storing OLAC metadata which describes linguistic resources. Many of the elements of the metadata are repeatable -- for example, a resource can have two languages, three authors and four dates associated with it. Is there any way of storing this in one model? It seems like overkill to define a model for each repeatable metadata element -- especially since the models will only have one field: it's value.

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  • SQLAlchemy - SQLite for testing and Postgresql for devlopment - How to port?

    - by StackUnderflow
    I want to use sqlite memory database for all my testing and Postgresql for my development/production server. But the SQL syntax is not same in both dbs. for ex: SQLite has autoincrement, and Postgresql has serial Is it easy to port the SQL script from sqlite to postgresql... what are your solutions? If you want me to use standard SQL, how should I go about generating primary key in both the databases?

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  • Project design / FS layout for large django projects

    - by rcreswick
    What is the best way to layout a large django project? The tutuorials provide simple instructions for setting up apps, models, and views, but there is less information about how apps and projects should be broken down, how much sharing is allowable/necessary between apps in a typical project (obviously that is largely dependent on the project) and how/where general templates should be kept. Does anyone have examples, suggestions, and explanations as to why a certain project layout is better than another? I am particularly interested in the incorporation of large numbers of unit tests (2-5x the size of the actual code base) and string externalization / templates.

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  • Django and json request

    - by Hulk
    In a template i have the following code <script> var url="/mypjt/my_timer" $.post(url, paramarr, function callbackHandler(dict) { alert('got response back'); if (dict.flag == 2) { alert('1'); $.jGrowl("Data could not be saved"); } else if(dict.ret_status == 1) { alert('2'); $.jGrowl("Data saved successfully"); window.location = "/mypjt/display/" + dict.rid; } }, "json" ); </script> In views i have the following code, def my_timer(request): dict={} try: a= timer.objects.get(pk=1) dict({'flag':1}) return HttpResponse(simplejson.dumps(dict), mimetype='application/javascript') except: dict({'flag':1}) return HttpResponse(simplejson.dumps(dict), mimetype='application/javascript') My question is since we are making a json request and in the try block ,after setting the flag ,cant we return a page directly as return render_to_response('mypjt/display.html',context_instance=RequestContext(request,{'dict': dict})) instead of sending the response, because on success again in the html page we redirect the code Also if there is a exception then only can we return the json request. My only concern is that the interaction between client and server should be minimal. Thanks..

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  • Django Grouping Query

    - by Matt
    I have the following (simplified) models: class Donation(models.Model): entry_date = models.DateTimeField() class Category(models.Model): name = models.CharField() class Item(models.Model): donation = models.ForeignKey(Donation) category = models.ForeignKey(Category) I'm trying to display the total number of items, per category, grouped by the donation year. I've tried this: Donation.objects.extra(select={'year': "django_date_trunc('year', %s.entry_date)" % Donation._meta.db_table}).values('year', 'item__category__name').annotate(items=Sum('item__quantity')) But I get a Field Error on item__category__name. I've also tried: Item.objects.extra(select={"year": "django_date_trunc('year', entry_date)"}, tables=["donations_donation"]).values("year", "category__name").annotate(items=Sum("quantity")).order_by() Which generally gets me what I want, but the item quantity count is multiplied by the number of donation records. Any ideas? Basically I want to display this: 2010 - Category 1: 10 items - Category 2: 17 items 2009 - Category 1: 5 items - Category 3: 8 items

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  • Django: Summing values

    - by Anry
    I have a two Model - Project and Cost. class Project(models.Model): title = models.CharField(max_length=150) url = models.URLField() manager = models.ForeignKey(User) class Cost(models.Model): project = models.ForeignKey(Project) cost = models.FloatField() date = models.DateField() I must return the sum of costs for each project. view.py: from mypm.costs.models import Project, Cost from django.shortcuts import render_to_response from django.db.models import Avg, Sum def index(request): #... return render_to_response('index.html',... How?

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  • Content-Length header not returned from Pylons response

    - by Evgeny
    I'm still struggling to Stream a file to the HTTP response in Pylons. In addition to the original problem, I'm finding that I cannot return the Content-Length header, so that for large files the client cannot estimate how long the download will take. I've tried response.content_length = 12345 and I've tried response.headers['Content-Length'] = 12345 In both cases the HTTP response (viewed in Fiddler) simply does not contain the Content-Length header. How do I get Pylons to return this header? (Oh, and if you have any ideas on making it stream the file please reply to the original question - I'm all out of ideas there.)

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  • How to set the size of a wx.aui.AuiManager Pane that is centered?

    - by aF
    Hello, I have three panes with the InfoPane center option. I want to know how to set their size. Using this code: import wx import wx.aui class MyFrame(wx.Frame): def __init__(self, parent, id=-1, title='wx.aui Test', pos=wx.DefaultPosition, size=(800, 600), style=wx.DEFAULT_FRAME_STYLE): wx.Frame.__init__(self, parent, id, title, pos, size, style) self._mgr = wx.aui.AuiManager(self) # create several text controls text1 = wx.TextCtrl(self, -1, 'Pane 1 - sample text', wx.DefaultPosition, wx.Size(200,150), wx.NO_BORDER | wx.TE_MULTILINE) text2 = wx.TextCtrl(self, -1, 'Pane 2 - sample text', wx.DefaultPosition, wx.Size(200,150), wx.NO_BORDER | wx.TE_MULTILINE) text3 = wx.TextCtrl(self, -1, 'Main content window', wx.DefaultPosition, wx.Size(200,150), wx.NO_BORDER | wx.TE_MULTILINE) # add the panes to the manager self._mgr.AddPane(text1, wx.CENTER) self._mgr.AddPane(text2, wx.CENTER) self._mgr.AddPane(text3, wx.CENTER) # tell the manager to 'commit' all the changes just made self._mgr.Update() self.Bind(wx.EVT_CLOSE, self.OnClose) def OnClose(self, event): # deinitialize the frame manager self._mgr.UnInit() # delete the frame self.Destroy() app = wx.App() frame = MyFrame(None) frame.Show() app.MainLoop() I want to know what is called when we change the size of the panes. If you tell me that, I can do the rest by myself :)

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  • How to create instances of related models in Django

    - by sevennineteen
    I'm working on a CMSy app for which I've implemented a set of models which allow for creation of custom Template instances, made up of a number of Fields and tied to a specific Customer. The end-goal is that one or more templates with a set of custom fields can be defined through the Admin interface and associated to a customer, so that customer can then create content objects in the format prescribed by the template. I seem to have gotten this hooked up such that I can create any number of Template objects, but I'm struggling with how to create instances - actual content objects - in those templates. For example, I can define a template "Basic Page" for customer "Acme" which has the fields "Title" and "Body", but I haven't figured out how to create Basic Page instances where these fields can be filled in. Here are my (somewhat elided) models... class Customer(models.Model): ... class Field(models.Model): ... class Template(models.Model): label = models.CharField(max_length=255) clients = models.ManyToManyField(Customer, blank=True) fields = models.ManyToManyField(Field, blank=True) class ContentObject(models.Model): label = models.CharField(max_length=255) template = models.ForeignKey(Template) author = models.ForeignKey(User) customer = models.ForeignKey(Customer) mod_date = models.DateTimeField('Modified Date', editable=False) def __unicode__(self): return '%s (%s)' % (self.label, self.template) def save(self): self.mod_date = datetime.datetime.now() super(ContentObject, self).save() Thanks in advance for any advice!

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  • List Directories and get the name of the Directory

    - by chrissygormley
    Hello, I am trying to get the code to list all the directories in a folder, change directory into that folder and get the name of the current folder. The code I have so far is below and isn't working at the minute. I seem to be getting the parent folder name. import os for directories in os.listdir(os.getcwd()): dir = os.path.join('/home/user/workspace', directories) os.chdir(dir) current = os.path.dirname(dir) new = str(current).split("-")[0] print new I also have other files in the folder but I do not want to list them. I have tried the below code but I haven't got it working yet either. for directories in os.path.isdir(os.listdir(os.getcwd())): Can anyone see where I am going wrong? Thanks

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  • Django Querysets -- need a less expensive way to do this..

    - by rh0dium
    Hi all, I have a problem with some code and I believe it is because of the expense of the queryset. I am looking for a much less expensive (in terms of time) way to to this.. log.info("Getting Users") employees = Employee.objects.filter(is_active = True) log.info("Have Users") if opt.supervisor: if opt.hierarchical: people = getSubs(employees, " ".join(args)) else: people = employees.filter(supervisor__name__icontains = " ".join(args)) else: log.info("Filtering Users") people = employees.filter(name__icontains = " ".join(args)) | \ employees.filter(unix_accounts__username__icontains = " ".join(args)) log.info("Filtered Users") log.info("Processing data") np = [] for person in people: unix, p4, bugz = "No", "No", "No" if len(person.unix_accounts.all()): unix = "Yes" if len(person.perforce_accounts.all()): p4 = "Yes" if len(person.bugzilla_accounts.all()): bugz = "Yes" if person.cell_phone != "": exphone = fixphone(person.cell_phone) elif person.other_phone != "": exphone = fixphone(person.other_phone) else: exphone = "" np.append({ 'name':person.name, 'office_phone': fixphone(person.office_phone), 'position': person.position, 'location': person.location.description, 'email': person.email, 'functional_area': person.functional_area.name, 'department': person.department.name, 'supervisor': person.supervisor.name, 'unix': unix, 'perforce': p4, 'bugzilla':bugz, 'cell_phone': fixphone(exphone), 'fax': fixphone(person.fax), 'last_update': person.last_update.ctime() }) log.info("Have data") Now this results in a log which looks like this.. 19:00:55 INFO phone phone Getting Users 19:00:57 INFO phone phone Have Users 19:00:57 INFO phone phone Processing data 19:01:30 INFO phone phone Have data As you can see it's taking over 30 seconds to simply iterate over the data. That is way too expensive. Can someone clue me into a more efficient way to do this. I thought that if I did the first filter that would make things easier but seems to have no effect. I'm at a loss on this one. Thanks To be clear this is about 1500 employees -- Not too many!!

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  • pysvn client.log() returning empty dictionary

    - by nashr rafeeg
    i have the following script that i am using to get the log messages from svn import pysvn class svncheck(): def __init__(self, svn_root="http://10.11.25.3/svn/Moodle/modules", svn_user=None, svn_password=None): self.user = svn_user self.password = svn_password self.root = svn_root def diffrence(self): client = pysvn.Client() client.commit_info_style = 1 client.callback_notify = self.notify client.callback_get_login = self.credentials log = client.log( self.root, revision_start=pysvn.Revision( pysvn.opt_revision_kind.number, 0), revision_end=pysvn.Revision( pysvn.opt_revision_kind.number, 5829), discover_changed_paths=True, strict_node_history=True, limit=0, include_merged_revisions=False, ) print log def notify( event_dict ): print event_dict return def credentials(realm, username, may_save): return True, self.user, self.password, True s = svncheck() s.diffrence() when i run this script its returning a empty dictionary object [<PysvnLog ''>, <PysvnLog ''>, <PysvnLog ''>,.. any idea what i am doing wrong here ? i am using pysvn version 1.7.2 built again svn version 1.6.5 cheers Nash

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  • In Django, why is user.is_authenticated a method and not a member variable like is_staff

    - by luc
    Hello all, I've lost some time with a bug in my app due to user authentication. I think that it's a bit confusing but maybe someone can explain the reason and it will appear to me very logical. The user.is_staff is a member variable while user.is_authenticated is a method. However is_authenticated only returns True or False depending if the class is User or AnonymousUser (see http://docs.djangoproject.com/en/dev/topics/auth/) Is there a reason for that? Why user.is_authenticated is a method? Thanks in advance

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  • Why does Module::Build's testcover gives me "use of uninitialized value" warnings?

    - by Kurt W. Leucht
    I'm kinda new to Module::Build, so maybe I did something wrong. Am I the only one who gets warnings when I change my dispatch from "test" to "testcover"? Is there a bug in Devel::Cover? Is there a bug in Module::Build? I probably just did something wrong. I'm using ActiveState Perl v5.10.0 with Module::Build version 0.31012 and Devel::Cover 0.64 and Eclipse 3.4.1 with EPIC 0.6.34 for my IDE. UPDATE: I upgraded to Module::Build 0.34 and the warnings are still output. *UPDATE: Looks like a bug in B::Deparse. Hope it gets fixed someday.* Here's my unit test build file: use strict; use warnings; use Module::Build; my $build = Module::Build->resume ( properties => { config_dir => '_build', }, ); $build->dispatch('test'); When I run this unit test build file, I get the following output: t\MyLib1.......ok t\MyLib2.......ok t\MyLib3.......ok All tests successful. Files=3, Tests=24, 0 wallclock secs ( 0.00 cusr + 0.00 csys = 0.00 CPU) But when I change the dispatch line to 'testcover' I get the following output which always includes a bunch of "use of uninitialized value in bitwise and" warning messages: Deleting database D:/Documents and Settings/<username>/My Documents/<SNIP>/cover_db t\MyLib1.......ok Use of uninitialized value in bitwise and (&) at D:/Perl/lib/B/Deparse.pm line 4252. Use of uninitialized value in bitwise and (&) at D:/Perl/lib/B/Deparse.pm line 4252. t\MyLib2.......ok Use of uninitialized value in bitwise and (&) at D:/Perl/lib/B/Deparse.pm line 4252. Use of uninitialized value in bitwise and (&) at D:/Perl/lib/B/Deparse.pm line 4252. t\MyLib3.......ok Use of uninitialized value in bitwise and (&) at D:/Perl/lib/B/Deparse.pm line 4252. Use of uninitialized value in bitwise and (&) at D:/Perl/lib/B/Deparse.pm line 4252. All tests successful. Files=3, Tests=24, 0 wallclock secs ( 0.00 cusr + 0.00 csys = 0.00 CPU) Reading database from D:/Documents and Settings/<username>/My Documents/<SNIP>/cover_db ---------------------------- ------ ------ ------ ------ ------ ------ ------ File stmt bran cond sub pod time total ---------------------------- ------ ------ ------ ------ ------ ------ ------ .../lib/ActivePerl/Config.pm 0.0 0.0 0.0 0.0 0.0 n/a 0.0 ...l/lib/ActiveState/Path.pm 0.0 0.0 0.0 0.0 100.0 n/a 4.8 <SNIP> blib/lib/<SNIP>/MyLib2.pm 100.0 90.0 n/a 100.0 100.0 0.0 98.5 blib/lib/<SNIP>/MyLib3.pm 100.0 90.9 100.0 100.0 100.0 0.6 98.0 Total 14.4 6.7 3.8 18.3 20.0 100.0 11.6 ---------------------------- ------ ------ ------ ------ ------ ------ ------ Writing HTML output to D:/Documents and Settings/<username>/My Documents/<SNIP>/cover_db/coverage.html ... done.

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