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  • def constrainedMatchPair(firstMatch,secondMatch,length):

    - by smart
    matches of a key string in a target string, where one of the elements of the key string is replaced by a different element. For example, if we want to match ATGC against ATGACATGCACAAGTATGCAT, we know there is an exact match starting at 5 and a second one starting at 15. However, there is another match starting at 0, in which the element A is substituted for C in the key, that is we match ATGC against the target. Similarly, the key ATTA matches this target starting at 0, if we allow a substitution of G for the second T in the key string. consider the following steps. First, break the key string into two parts (where one of the parts could be an empty string). Let's call them key1 and key2. For each part, use your function from Problem 2 to find the starting points of possible matches, that is, invoke starts1 = subStringMatchExact(target,key1) and starts2 = subStringMatchExact(target,key2) The result of these two invocations should be two tuples, each indicating the starting points of matches of the two parts (key1 and key2) of the key string in the target. For example, if we consider the key ATGC, we could consider matching A and GC against a target, like ATGACATGCA (in which case we would get as locations of matches for A the tuple (0, 3, 5, 9) and as locations of matches for GC the tuple (7,). Of course, we would want to search over all possible choices of substrings with a missing element: the empty string and TGC; A and GC; AT and C; and ATG and the empty string. Note that we can use your solution for Problem 2 to find these values. Once we have the locations of starting points for matches of the two substrings, we need to decide which combinations of a match from the first substring and a match of the second substring are correct. There is an easy test for this. Suppose that the index for the starting point of the match of the first substring is n (which would be an element of starts1), and that the length of the first substring is m. Then if k is an element of starts2, denoting the index of the starting point of a match of the second substring, there is a valid match with one substitution starting at n, if n+m+1 = k, since this means that the second substring match starts one element beyond the end of the first substring. finally the question is Write a function, called constrainedMatchPair which takes three arguments: a tuple representing starting points for the first substring, a tuple representing starting points for the second substring, and the length of the first substring. The function should return a tuple of all members (call it n) of the first tuple for which there is an element in the second tuple (call it k) such that n+m+1 = k, where m is the length of the first substring.

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  • Error while exiting cherrypy server

    - by Vijayendra Bapte
    Guys, I am getting following error while exiting cherrypy server. What is this error about? 2009-11-04 09:32:35,015 WARNING Error in atexit._run_exitfuncs: 2009-11-04 09:32:35,015 WARNING 2009-11-04 09:32:35,015 WARNING Traceback (most recent call last): 2009-11-04 09:32:35,015 WARNING File "atexit.pyc", line 24, in _run_exitfuncs 2009-11-04 09:32:35,015 WARNING File "logging\__init__.pyc", line 1486, in shutdown 2009-11-04 09:32:35,015 WARNING File "logging\__init__.pyc", line 746, in flush 2009-11-04 09:32:35,015 WARNING IOError: [Errno 9] Bad file descriptor 2009-11-04 09:32:35,015 WARNING Error in sys.exitfunc: 2009-11-04 09:32:35,015 WARNING Traceback (most recent call last): 2009-11-04 09:32:35,015 WARNING File "atexit.pyc", line 24, in _run_exitfuncs 2009-11-04 09:32:35,015 WARNING File "logging\__init__.pyc", line 1486, in shutdown 2009-11-04 09:32:35,015 WARNING File "logging\__init__.pyc", line 746, in flush 2009-11-04 09:32:35,015 WARNING IOError 2009-11-04 09:32:35,015 WARNING : 2009-11-04 09:32:35,015 WARNING [Errno 9] Bad file descriptor 2009-11-04 09:32:35,015 WARNING

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  • what would be a frozen dict ?

    - by dugres
    A frozen set is a frozenset. A frozen list could be a tuple. What would be a frozen dict ? An immutable, hashable dict. I guess it could be something like collections.namedtuple, but namedtuple is more like a frozenkeys dict (an half-frozen dict). No ?

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  • Matching First Alphanumeric Character skipping (The |An? )

    - by TheLizardKing
    I have a list of artists, albums and tracks that I want to sort using the first letter of their respective name. The issue arrives when I want to ignore "The ", "A ", "An " and other various non-alphanumeric characters (Talking to you "Weird Al" Yankovic and [dialog]). Django has a nice start '^(An?|The) +' but I want to ignore those and a few others of my choice. I am doing this in Django, using a MySQL db with utf8_bin collation. EDIT Well my fault for not mentioning this but the database I am accessing is pretty much ready only. It's created and maintained by Amarok and I can't alter it without a whole mess of issues. That being said the artist table has The Chemical Brothers listed as The Chemical Brothers so I think I am stuck here. It probably will be slow but that's not so much of a concern for me as it's a personal project.

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  • slicing 2d numpy array

    - by MedicalMath
    I have a 2d numpy array called FilteredOutput that has 2 columns and 10001 rows, though the number of rows is a variable. I am trying to take the 2nd column of FilteredOutput and use it to populate a new 1d numpy array called timeSeriesArray using the following line of code: timeSeriesArray=p.array(FilteredOutput[:,0]) I got this syntax from the following link. But the problem is that I am getting the following error message: TypeError: list indices must be integers, not tuple Can anyone show me the proper syntax for populating the 1d array timeSeriesArray with the contents of the second column of the 2d array FilteredOutput?

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  • MUD (game) design concept question about timed events.

    - by mudder
    I'm trying my hand at building a MUD (multiplayer interactive-fiction game) I'm in the design/conceptualizing phase and I've run into a problem that I can't come up with a solution for. I'm hoping some more experienced programmers will have some advice. Here's the problem as best I can explain it. When the player decides to perform an action he sends a command to the server. the server then processes the command, determines whether or not the action can be performed, and either does it or responds with a reason as to why it could not be done. One reason that an action might fail is that the player is busy doing something else. For instance, if a player is mid-fight and has just swung a massive broadsword, it might take 3 seconds before he can repeat this action. If the player attempts to swing again to soon, the game will respond indicating that he must wait x seconds before doing that. Now, this I can probably design without much trouble. The problem I'm having is how I can replicate this behavior from AI creatures. All of the events that are being performed by the server ON ITS OWN, aka not as an immediate reaction to something a player has done, will have to be time sensitive. Some evil monster has cast a spell on you but must wait 30 seconds before doing it again... I think I'll probably be adding all these events to some kind of event queue, but how can I make that event queue time sensitive?

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  • Iterating dictionary indexes in django templates

    - by unclaimedbaggage
    Hi folks...I have a dictionary with embedded objects, which looks something like this: notes = { 2009: [<Note: Test note>, <Note: Another test note>], 2010: [<Note: Third test note>, <Note: Fourth test note>], } I'm trying to access each of the note objects inside a django template, and having a helluva time navigating to them. In short, I'm not sure how to extract by index in django templating. Current template code is: <h3>Notes</h3> {% for year in notes %} {{ year }} # Works fine {% for note in notes.year %} {{ note }} # Returns blank {% endfor %} {% endfor %} If I replace {% for note in notes.year %} with {% for note in notes.2010 %} things work fine, but I need that '2010' to be dynamic. Any suggestions much appreciated.

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  • Removing the port number from URL

    - by DrewSSP
    I'm new to anything related to servers and am trying to deploy a django application. Today I bought a domain name for the app and am having trouble configuring it so that the base URL does not need the port number at the end of it. I have to type www.trackthecharts.com:8001 to see the website when I only want to use www.trackethecharts.com. I think the problem is somewhere in my nginx, gunicorn or supervisor configuration. gunicorn_config.py command = '/opt/myenv/bin/gunicorn' pythonpath = '/opt/myenv/top-chart-app/' bind = '162.243.76.202:8001' workers = 3 root@django-app:~# nginx config server { server_name 162.243.76.202; access_log off; location /static/ { alias /opt/myenv/static/; } location / { proxy_pass http://127.0.0.1:8001; proxy_set_header X-Forwarded-Host $server_name; proxy_set_header X-Real-IP $remote_addr; add_header P3P 'CP="ALL DSP COR PSAa PSDa OUR NOR ONL UNI COM NAV"'; } } supervisor config [program:top_chart_gunicorn] command=/opt/myenv/bin/gunicorn -c /opt/myenv/gunicorn_config.py djangoTopChartApp.wsgi autostart=true autorestart=true stderr_logfile=/var/log/supervisor_gunicorn.err.log stdout_logfile=/var/log/supervisor_gunicorn.out.log Thanks for taking a look.

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  • Google App Engine - Document Editor Creation/Tap Into Google Docs?

    - by Josh Patton
    What is the best way to create a custom document editor in GAE? I'm making a website meant for a School Robotics Club (With support for any other organization - DRY). We currently use Google services for online collaboration, I'm wondering if there is a way to tap into Google Docs and allow users to edit a Google Document without using Google Accounts or the Google Doc interface. If that is not possible (I've researched and I don't think it is), what is the best way to make a document editor? I want it completely on the website I'm creating, so I'm assuming just some javascript editor like TinyMCE + Ajax + Datastore. Is their anything that replicates Google Doc's/Microsoft Offices's/OpenOffice.org's feature set as far as fonts, spacing, alignment, justification, etc.?

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  • How to create a HTML world map with GeoDjango ?

    - by pierre-guillaume-degans
    The GeoDjango tutorial explains how to insert world borders into a spatial database. I would like to create a world Map in HTML with these data, with both map and area tags. Something like that. I just don't know how to retrieve the coordinates for each country (required for the area's coords attribute). from world.models import WorldBorders for country in WorldBorders.objects.all(): print u'<area shape="poly" title="%s" alt="%s" coords="%s" />' % (v.name, v.name, "???") Thanks !

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  • Mean of Sampleset and powered Sampleset

    - by Milla Well
    I am working on an ICA implementation wich is based on the assumption, that all source signals are independent. So I checked on the basic concepts of Dependence vs. Correlation and tried to show this example on sample data from numpy import * from numpy.random import * k = 1000 s = 10000 mn = 0 mnPow = 0 for i in arange(1,k): a = randn(s) a = a-mean(a) mn = mn + mean(a) mnPow = mnPow + mean(a**3) print "Mean X: ", mn/k print "Mean X^3: ", mnPow/k But I couldn't produce the last step of this example E(X^3) = 0: >> Mean X: -1.11174580826e-18 >> Mean X^3: -0.00125229267144 First value I would consider to be zero, but second value is too large, isn't it? Since I subtract the mean of a, I expected the mean of a^3 to be zero as well. Does the problem lie in the random number generator, the precision of the numerical values in my misunderstanding of the concepts of mean and expected value?

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  • How can you dispatch on request method in Django URLpatterns?

    - by rcampbell
    It's clear how to create a URLPattern which dispatches from a URL regex: (r'^books/$', books), where books can further dispatch on request method: def books(request): if request.method == 'POST': ... else ... I'd like to know if there is an idiomatic way to include the request method inside the URLPattern, keeping all dispatch/route information in a single location, such as: (r'^books/$', GET, retrieve-book), (r'^books/$', POST, update-books), (r'^books/$', PUT, create-books),

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  • Self Authenticating Links in Django

    - by awolf
    In my web app I would like to be able to email self-authenticating links to users. These links will contain a unique token (uuid). When they click the link the token being present in the query string will be enough to authenticate them and they won't have to enter their username and password. What's the best way to do this?

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  • Jython java call throws exception asking for 2 args when only one arg is coded

    - by clutch
    I have an Java method I want to call within my Jython servlet running on tomcat5. It looks like this: @SuppressWarnings("unchecked") public School loadByName(String name) { List<School> school; school = getHibernateTemplate().find("from " + getPersistentClass().getName() + " where name = ?", name); return uniqueResult(school); } I call it in Jython using: foobar = SchoolDAOHibernate.loadByName('Univeristy') It throws an error that says loadByName() expects 2 args; got 1. What other argument could it be looking for?

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  • supervisord environment variables setting up application

    - by user1434844
    I'm running an application from supervisord and I have to set up an environment for it. There are about 30 environment variables that need to be set. I've tried putting all on one big environment= line and that doesn't seem to work. I've also tried multiple enviroment= lines, and that doesn't seem to work either. I've also tried both with and without ' around the env value. What's the best way to set up my environment such that it remains intact under supervisord control? Should I be calling my actual program (tornado, fwiw) from a shell script with the environment preloaded there? Ideally, I'd like to put all of the enviroment variables into an include file and load them with supervisor, but I'm open to doing it another way.

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  • Trying and expand the contrib.auth.user model and add a "relatipnships" manage

    - by dotty
    I have the following model setup. from django.db import models from django.contrib.auth.models import User class SomeManager(models.Manager): def friends(self): # return friends bla bla bla class Relationship(models.Model): """(Relationship description)""" from_user = models.ForeignKey(User, related_name='from_user') to_user = models.ForeignKey(User, related_name='to_user') has_requested_friendship = models.BooleanField(default=True) is_friend = models.BooleanField(default=False) objects = SomeManager() relationships = models.ManyToManyField(User, through=Relationship, symmetrical=False) relationships.contribute_to_class(User, 'relationships') Here i take the User object and use contribute_to_class to add 'relationships' to the User object. The relationship show up, but if call User.relationships.friends it should run the friends() method, but its failing. Any ideas how i would do this? Thanks

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  • How to get the related_name of a many-to-many-field?

    - by amann
    I am trying to get the related_name of a many-to-many-field. The m2m-field is located betweeen the models "Group" and "Lection" and is declared in the group-model as following: lections = models.ManyToManyField(Lection, blank=True) The field looks like this: <django.db.models.fields.related.ManyToManyField object at 0x012AD690> The print of field.__dict__ is: {'_choices': [], '_m2m_column_cache': 'group_id', '_m2m_name_cache': 'group', '_m2m_reverse_column_cache': 'lection_id', '_m2m_reverse_name_cache': 'lection', '_unique': False, 'attname': 'lections', 'auto_created': False, 'blank': True, 'column': 'lections', 'creation_counter': 71, 'db_column': None, 'db_index': False, 'db_table': None, 'db_tablespace': '', 'default': <class django.db.models.fields.NOT_PROVIDED at 0x00FC8780>, 'editable': True, 'error_messages': {'blank': <django.utils.functional.__proxy__ object at 0x00FC 7B50>, 'invalid_choice': <django.utils.functional.__proxy__ object at 0x00FC7A50>, 'null': <django.utils.functional.__proxy__ object at 0x00FC7 A70>}, 'help_text': <django.utils.functional.__proxy__ object at 0x012AD6F0>, 'm2m_column_name': <function _curried at 0x012A88F0>, 'm2m_db_table': <function _curried at 0x012A8AF0>, 'm2m_field_name': <function _curried at 0x012A8970>, 'm2m_reverse_field_name': <function _curried at 0x012A89B0>, 'm2m_reverse_name': <function _curried at 0x012A8930>, 'max_length': None, 'name': 'lections', 'null': False, 'primary_key': False, 'rel': <django.db.models.fields.related.ManyToManyRel object at 0x012AD6B0>, 'related': <RelatedObject: mymodel:group related to lections>, 'related_query_name': <function _curried at 0x012A8670>, 'serialize': True, 'unique_for_date': None, 'unique_for_month': None, 'unique_for_year': None, 'validators': [], 'verbose_name': 'lections'} Now the field should be accessed via a lection-instance. So this is done by lection.group_set But i need to access it dynamically, so there is the need to get the related_name attribute from somewhere. Here in the documentation, there is a note that it is possible to access ManyToManyField.related_name, but this doesn't work for my somehow.. Help would be a lot appreciated. Thanks in advance.

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  • JQuery cookie access has stopped working for GAE app

    - by Greg
    I have a google app engine app that has been running for some time, and some javascript code that checks for a login cookie has suddenly stopped working. As far as I can tell, NO code has changed. The relevant code uses the jquery cookies plugin (jquery.cookies.2.2.0.min.js)... // control the default screen depending // if someone is logged in if( $.cookies.get('dev_appserver_login') != null || $.cookies.get('ACSID') != null ) { alert("valid cookie!") $("#inventory-container").show(); } else { alert("INvalid cookie!") $("#welcome-container").show(); } The reason for the two checks is that in the GAE SDK, the cookies are named differently. The production system uses 'ACSID'. This if statement works in the SDK and now fails 100% of the time in production. I have verified that the cookie is, in fact, present when I inspect the page. Thoughts?

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