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• High CPU usage in my digitalocean droplet

  - by Ibrahim Azhar Armar

  I am experiencing high CPU usage here is the stats i got from server, the consumption after every restart in 15 minutes go upto 100%, what could go wrong? I have a wordpress copy installed on the server which does not have much traffic, here is the stats that i got from using top command in server. top - 11:46:02 up 12 min, 3 users, load average: 40.89, 16.03, 6.11 Tasks: 132 total, 41 running, 91 sleeping, 0 stopped, 0 zombie Cpu(s): 24.3%us, 61.5%sy, 0.0%ni, 0.0%id, 4.0%wa, 0.0%hi, 0.0%si, 10.2%st Mem: 2050896k total, 1988656k used, 62240k free, 284k buffers Swap: 0k total, 0k used, 0k free, 4712k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 31 root 20 0 0 0 0 R 39 0.0 1:35.53 kswapd0 899 root 20 0 15988 172 0 S 14 0.0 0:05.00 irqbalance 418 syslog 20 0 243m 600 0 S 13 0.0 0:06.85 rsyslogd 944 mysql 20 0 1320m 53m 0 S 12 2.7 0:21.15 mysqld 2357 root 20 0 17344 532 164 R 11 0.0 0:14.27 top 960 root 20 0 246m 3816 0 S 3 0.2 0:08.18 php5-fpm 2431 www-data 20 0 344m 64m 908 R 2 3.2 0:04.23 apache2 2435 www-data 20 0 304m 63m 836 R 2 3.2 0:03.43 apache2 2413 www-data 20 0 349m 63m 920 R 2 3.2 0:07.51 apache2 2465 www-data 20 0 349m 64m 944 R 2 3.2 0:05.04 apache2 2518 www-data 20 0 307m 41m 1204 R 2 2.1 0:01.37 apache2 2406 www-data 20 0 346m 56m 1144 R 2 2.8 0:03.76 apache2 2456 www-data 20 0 345m 55m 1184 R 2 2.8 0:02.67 apache2 2373 www-data 20 0 351m 63m 784 R 2 3.2 0:11.09 apache2 2439 www-data 20 0 306m 35m 916 R 2 1.8 0:02.51 apache2 2450 www-data 20 0 345m 55m 1088 R 2 2.8 0:02.96 apache2 2486 www-data 20 0 299m 10m 876 R 2 0.5 0:01.19 apache2 2523 www-data 20 0 300m 27m 796 R 2 1.4 0:00.99 apache2

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• memory tuning with rails/unicorn running on ubuntu

  - by user970193

  I am running unicorn on Ubuntu 11, Rails 3.0, and Ruby 1.8.7. It is an 8 core ec2 box, and I am running 15 workers. CPU never seems to get pinned, and I seem to be handling requests pretty nicely. My question concerns memory usage, and what concerns I should have with what I am seeing. (if any) Here is the scenario: Under constant load (about 15 reqs/sec coming in from nginx), over the course of an hour, each server in the 3 server cluster loses about 100MB / hour. This is a linear slope for about 6 hours, then it appears to level out, but still maybe appear to lose about 10MB/hour. If I drop my page caches using the linux command echo 1 /proc/sys/vm/drop_caches, the available free memory shoots back up to what it was when I started the unicorns, and the memory loss pattern begins again over the hours. Before: total used free shared buffers cached Mem: 7130244 5005376 2124868 0 113628 422856 -/+ buffers/cache: 4468892 2661352 Swap: 33554428 0 33554428 After: total used free shared buffers cached Mem: 7130244 4467144 2663100 0 228 11172 -/+ buffers/cache: 4455744 2674500 Swap: 33554428 0 33554428 My Ruby code does use memoizations and I'm assuming Ruby/Rails/Unicorn is keeping its own caches... what I'm wondering is should I be worried about this behaviour? FWIW, my Unicorn config: worker_processes 15 listen "#{CAPISTRANO_ROOT}/shared/pids/unicorn_socket", :backlog = 1024 listen 8080, :tcp_nopush = true timeout 180 pid "#{CAPISTRANO_ROOT}/shared/pids/unicorn.pid" GC.respond_to?(:copy_on_write_friendly=) and GC.copy_on_write_friendly = true before_fork do |server, worker| STDERR.puts "XXXXXXXXXXXXXXXXXXX BEFORE FORK" print_gemfile_location defined?(ActiveRecord::Base) and ActiveRecord::Base.connection.disconnect! defined?(Resque) and Resque.redis.client.disconnect old_pid = "#{CAPISTRANO_ROOT}/shared/pids/unicorn.pid.oldbin" if File.exists?(old_pid) && server.pid != old_pid begin Process.kill("QUIT", File.read(old_pid).to_i) rescue Errno::ENOENT, Errno::ESRCH # already killed end end File.open("#{CAPISTRANO_ROOT}/shared/pids/unicorn.pid.ok", "w"){|f| f.print($$.to_s)} end after_fork do |server, worker| defined?(ActiveRecord::Base) and ActiveRecord::Base.establish_connection defined?(Resque) and Resque.redis.client.connect end Is there a need to experiment enforcing more stringent garbage collection using OobGC (http://unicorn.bogomips.org/Unicorn/OobGC.html)? Or is this just normal behaviour, and when/as the system needs more memory, it will empty the caches by itself, without me manually running that cache command? Basically, is this normal, expected behaviour? tia

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• Evernote from vim

  - by juanpablo

  I search a way to edit evernote notes from vim I begin with this #!/bin/bash evernoteDir="$HOME/Library/Application*Support/Evernote/data" dataDir=$(ls -trlh $evernoteDir| tail -n 1| awk '{print $NF}') contentDir="$evernoteDir/$dataDir/content" file=$(ls -trlh $contentDir | tail -n 1| awk '{print $NF}') vim -c 's/div>/div>\r/g' $contentDir/$file/content.html https://gist.github.com/1256416 or maybe create a vim plugin for this ... you have any suggestion? EDIT: for a more simple edition of the evernote note in html format, I make this vim function " Markup function {{{ fun! MkdToHtml() "{{{ " markdown to html silent! execute '%s/ $/<br\/>/g' silent! execute '%s/\*\*\(.*\)\*\*/<b>\1<\/b>/g' silent! execute '%s/\t*###\(.*\)/<H3>\1<\/H3>/g' endf "}}} command! -complete=command MkdToHtml call MkdToHtml() nn <silent> <leader>mm :MkdToHtml<CR> " }}} and a vim function for open the last note edited fun! LastEvernote() "{{{ " a better solution is with evernote api let evernoteDir=expand("$HOME")."/Library/Application*Support/Evernote/data" let dataDir=system("ls -trlh ".evernoteDir."| tail -n 1| awk '{print $NF}'") let contentDir=evernoteDir."/".dataDir."/content" let contentDir=substitute(contentDir,"\n","",'g') let note=system("ls -trlh ".contentDir." | tail -n 1| awk '{print $NF}'") let note=substitute(note,"\n","",'g') sil! exec 'sp '.contentDir.'/'.note.'/content.html' sil! exec '1s/>/>\r/g' sil! exec '%s/<br.*\/>/<br\/>\r/g' sil! exec '%s/<\//\r<\//g' sil! exec 'g/^\s*$/d' normal gg sil! exec '1,4fo' sil! exec '$-1,$fo' endf https://gist.github.com/1289727

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• Running python script in incrontab in Debian

  - by WilliamMayor

  I have a user, dropbox, that runs the Dropbox daemon, I want to monitor the directories in the Dropbox directory for new files and run a python script when they appear. I have the python script that I know works: $ /home/dropbox/monitor.py Trying to get lock Got lock, waiting for Dropbox to be idle Dropbox idle Finding instructions Done, releasing lock I have an incrontab entry: $ incrontab -l /home/dropbox/Dropbox IN_CREATE /home/dropbox/monitor.py | logger /home/dropbox/test IN_CREATE logger "$$ $@ $# $% $&" When I add a file to the test directory I see the output in /var/log/syslog: $ touch /home/dropbox/test/a $ tail /var/log/syslog ... Nov 9 10:18:27 vps incrond[1354]: (dropbox) CMD (logger "$ /home/dropbox/test a IN_CREATE 256") Nov 9 10:18:27 vps logger: "$ /home/dropbox/test a IN_CREATE 256" ... However, when I add a file to the Dropbox directory the command doesn't seem to run: $ touch /home/dropbox/Dropbox/a $ tail /var/log/syslog ... Nov 9 10:24:16 vps incrond[1354]: (dropbox) CMD (/home/dropbox/monitor.py | logger) ... So the incron daemon notices the new file and the correct command is found to be executed but it never actually gets executed. Nor are there any error messages. It kind of seems like incrontab can only be used to run the most simple of commands. This might be a similar question to: Incrond running but not executing commands CentOS 6.4 but I think that I don't have env problems, every path is absolute. I tried changing .../monitor.py to /usr/bin/python2.7 .../monitor.py just in case but it didn't make any difference.

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• How to clone MySQL DB? Errors with CREATE VIEW/SHOW VIEW privileges

  - by user38071

  Running MySQL 5.0.32 on Debian 4.0 (Etch). I'm trying to clone a WordPress MySQL database completely (structure and data) on the same server. I tried doing a dump to a .sql file and an import into a new empty database from the command line, but the import fails with errors saying the user does not have the "SHOW VIEW" or "CREATE VIEW" privilege. Trying it with PHPMyAdmin doesn't work either. I also tried doing this with the MySQL root user (not named "root" though) and it shows an "Access Denied" error. I'm terribly confused as to where the problem is. Any pointers on cloning a MySQL DB and granting all privileges to a user account would be great (specifically for MySQL 5.0.32). The SHOW GRANTS command for the existing user works (the one who has privileges over the source database). It shows that the user has all privileges granted. I created a new user and database. Here's what I see with the grant commands. $ mysql -A -umyrootaccount --password=myrootaccountpassword mysql> grant all privileges on `newtarget_db`.* to 'newtestuser'@'localhost'; ERROR 1044 (42000): Access denied for user 'myrootaccount'@'localhost' to database 'newtarget_db' mysql> grant all privileges on `newtarget_db`.* to 'existingsourcedbuser'@'localhost'; ERROR 1044 (42000): Access denied for user 'myrootaccount'@'localhost' to database 'newtarget_db'

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• smartctl short test doesn't seem to complete

  - by Cédric COPY

  I am working on project which involve automated HDD testing through smartctl. The station is working fine on most product, but I have two specific products that fail the smartctl test. Those two product are both WD product (WD2500BUDT series) Smartctl behaviour is quite strange, in fact the test is launched without any problem, i wait about 2min (test length), and when i check the smartctl, i have got no result at all. It's like I hadn't launched any test (no fail, no success in smartctl result). No error return on command, nothing in syslog, .. As i said before, the test is working for other product, thousands products worked well with this test. The main smartctl command used are : smarctl -t shortest /dev/sdX #Launch test smartctl -l selftest /dev/sdX #Look at test result I have tried to use: smartctl -s on /dev/sdX or smartctl -o on /dev/sdX But doesn't change anything. The system is using Debian 6.0, smartctl v5.40 (rev 3124) x86_64, HDD are plug through SATA to PCI controller. I have 4 HDD connected at a time. Well if anyone has some hints to give with this problem, because I have no idea how can i fix this. Thanks in advance. PS: Not sure if it was a serverfault topic, sorry if i was wrong!

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• IPv6 working fine, IPv4 throws OpenSSL error

  - by jippie

  I am building a webserver ( http://blog.linformatronics.nl/ ), which functions just fine on both IPv4 and IPv6 and when using a non-SSL connection. However when I connect to it through https, IPv6 works as expected, but an IPv4 connection throws a client side error. Server side logs are empty for the IPv4/https connection. Summarized in a table: | http | https -----+-------+------------------------------------------------------- IPv4 | works | OpenSSL error, failed. No server side logging. -----+-------+------------------------------------------------------- IPv6 | works | self signed certificate warning, but works as expected Apparently the SSL tunnel isn't even set up, which accounts for the Apache logs being empty. But why does it work fine for IPv6 and fail for IPv4? My question is why is this OpenSSL error being thrown and how can I solve it? Below is some extra information about the setup. IPv6 https Command used to reproduce IPv6/https behaviour: $ wget --no-check-certificate -O /dev/null -6 https://blog.linformatronics.nl --2012-11-03 15:46:48-- https://blog.linformatronics.nl/ Resolving blog.linformatronics.nl (blog.linformatronics.nl)... 2001:980:1b7f:1:a00:27ff:fea6:a2e7 Connecting to blog.linformatronics.nl (blog.linformatronics.nl)|2001:980:1b7f:1:a00:27ff:fea6:a2e7|:443... connected. WARNING: cannot verify blog.linformatronics.nl's certificate, issued by `/CN=localhost': Self-signed certificate encountered. WARNING: certificate common name `localhost' doesn't match requested host name `blog.linformatronics.nl'. HTTP request sent, awaiting response... 200 OK Length: 4556 (4.4K) [text/html] Saving to: `/dev/null' 100%[=======================================================================>] 4,556 --.-K/s in 0s 2012-11-03 15:46:49 (62.5 MB/s) - `/dev/null' saved [4556/4556] IPv4 https Command used to reproduce IPv6/https behaviour: $ wget --no-check-certificate -O /dev/null -4 https://blog.linformatronics.nl --2012-11-03 15:47:28-- https://blog.linformatronics.nl/ Resolving blog.linformatronics.nl (blog.linformatronics.nl)... 82.95.251.247 Connecting to blog.linformatronics.nl (blog.linformatronics.nl)|82.95.251.247|:443... connected. OpenSSL: error:140770FC:SSL routines:SSL23_GET_SERVER_HELLO:unknown protocol Unable to establish SSL connection. Notes I am on Ubuntu Server 12.04.1 LTS

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• starting oracle 10g on ubuntu, Listener failed to start.

  - by tsegay

  I have installed oracle 10g on a ubuntu 10.x, This is my first time installation. After installing I tried to start it with the command below. tsegay@server-name:/u01/app/oracle/product/10.2.0/db_1/bin$ lsnrctl LSNRCTL for Linux: Version 10.2.0.1.0 - Production on 29-DEC-2010 22:46:51 Copyright (c) 1991, 2005, Oracle. All rights reserved. Welcome to LSNRCTL, type "help" for information. LSNRCTL> start Starting /u01/app/oracle/product/10.2.0/db_1/bin/tnslsnr: please wait... TNSLSNR for Linux: Version 10.2.0.1.0 - Production System parameter file is /u01/app/oracle/product/10.2.0/db_1/network/admin/listener.ora Log messages written to /u01/app/oracle/product/10.2.0/db_1/network/log/listener.log Error listening on: (DESCRIPTION=(ADDRESS=(PROTOCOL=IPC)(KEY=EXTPROC1))) TNS-12555: TNS:permission denied TNS-12560: TNS:protocol adapter error TNS-00525: Insufficient privilege for operation Linux Error: 1: Operation not permitted Listener failed to start. See the error message(s) above... my listener.ora file looks like this: # listener.ora Network Configuration File: /u01/app/oracle/product/10.2.0/db_1/network/admin/listener.ora # Generated by Oracle configuration tools. SID_LIST_LISTENER = (SID_LIST = (SID_DESC = (SID_NAME = PLSExtProc) (ORACLE_HOME = /u01/app/oracle/product/10.2.0/db_1) (PROGRAM = extproc) ) ) LISTENER = (DESCRIPTION_LIST = (DESCRIPTION = (ADDRESS = (PROTOCOL = IPC)(KEY = EXTPROC1)) (ADDRESS = (PROTOCOL = TCP)(HOST = acct-vmserver)(PORT = 1521)) ) ) I can guess the problem is with permission issue, But i dont know where I have to do the change on permission. Any help is appreciated ... EDIT## When i run with the command sudo, i got this tsegay@server-name:/u01/app/oracle/product/10.2.0/db_1$ sudo ./bin/lsnrctl start LSNRCTL for Linux: Version 10.2.0.1.0 - Production on 30-DEC-2010 01:01:03 Copyright (c) 1991, 2005, Oracle. All rights reserved. Starting ./bin/tnslsnr: please wait... ./bin/tnslsnr: error while loading shared libraries: libclntsh.so.10.1: cannot open shared object file: No such file or directory TNS-12547: TNS:lost contact TNS-12560: TNS:protocol adapter error TNS-00517: Lost contact Linux Error: 32: Broken pipe

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• How do I install mod_dav_svn module on an Apache / MAMP server?

  - by fettereddingoskidney

  How do I install additional modules into my server configuration? Currently all of the other modules are installed in /Applications/MAMP/Library/modules...and I see that they are mod_*.so source files, but I cannot seem to get mine to end up here... :? I am trying to set up an SVN repository and use my Apache (MAMP) server to serve the repository. I am using the subversion installation that came (pre-installed?) on Mac OS X 10.5. The repository is working, but I cannot access it remotely through my MAMP server using a client program (Dreamweaver CS5). When I try, I get an error from Dreamweaver, saying: Cannot connect to host xxx: Connection refused. This, I believe, is because I have not properly configured my Apache server to serve the svn repository. So, I added the following lines to my httpd.conf file: <Location /subversion> DAV svn SVNPath /Applications/MAMP/htdocs/svn/ AuthType Basic AuthName "Subversion repository" AuthUserFile /applications/mamp/htdocs/.htpasswd Require ServerAdmin </Location> Restarted the server with the command $ /Applications/MAMP/Library/bin/apachectl -k restart I used this path because otherwise the default apachectl path is set to /usr/sbin/apachectl, which is the location of the pre-installed command on Mac OS X, since the OS comes packaged with a built-in Apache server. And I get the error: Syntax error on line 1153 of /Applications/MAMP/conf/apache/httpd.conf: Unknown DAV provider: svn I checked the upper portion of httpd.conf and see that dav_module (mod_dav.so) is loaded and is in fact in my the modules directory of my server. However, mod_dav_svn is not installed in that directory nor is it in the LoadModule portion of httpd.conf. So I need to install it, right? I have tried installing modules into my MAMP server before but was never successful...because I don't know how to do it. Can someone please walk me through how to install that module? Thanks for your time!

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• Mutual piping on linux

  - by user21919

  I would like the output of A to be input for B and at the same time the output of B to be the input for A, is that possible? I tried the naïve thing: creating named pipes for A (pipeA) and B (pipeB) and then: pipeB | A | pipeA & pipeA | B | pipeB & But that does not work (pipeB is empty and switching the order would not help either). Any help would be appreciated. Example: Command A could be compiled form of this C program: #include <stdio.h> int main() { printf("0\n"); int x = 0; while (scanf("%d", &x) != EOF) { printf("%d\n", x + 1); } return 0; } Command B could be compiled form of this C program: #include <stdio.h> int main() { int x = 0; while (scanf("%d", &x) != EOF) { printf("%d\n", x + x); } return 0; }

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• Oracle Database Recovery Problem

  - by Palani

  I am very new to Oracle, and trying to restore a oracle 8i database on win 2000 server. I have one week old database backup (backup taken with exp command), and i want to restore it now. Now I am unable to login through sqlplus (got shutdown in progress error) I have a backup and i want to restore it, but oracle is not starting at all, and 'imp' command is failing. I started sqlplus / as sysdba and following is the log of what i am trying to do. Can some one guide me further. SQL> shutdown immediate; ORA-01109: database not open Database dismounted. ORACLE instance shut down. SQL> startup; ORACLE instance started. Total System Global Area 143423516 bytes Fixed Size 75804 bytes Variable Size 58105856 bytes Database Buffers 85164032 bytes Redo Buffers 77824 bytes Database mounted. ORA-01589: must use RESETLOGS or NORESETLOGS option for database open SQL> shutdown immediate; ORA-01109: database not open Database dismounted. ORACLE instance shut down. SQL> startup mount; ORACLE instance started. Total System Global Area 143423516 bytes Fixed Size 75804 bytes Variable Size 58105856 bytes Database Buffers 85164032 bytes Redo Buffers 77824 bytes Database mounted. SQL> alter database open; alter database open * ERROR at line 1: ORA-01589: must use RESETLOGS or NORESETLOGS option for database open SQL> alter database open resetlogs; alter database open resetlogs * ERROR at line 1: ORA-01245: offline file 1 will be lost if RESETLOGS is done ORA-01110: data file 1: 'C:\ORACLE\ORADATA\ABCD\SYSTEM01.DBF'

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• Problem routing between directly connected Subnets w/ ASA-5510

  - by Zephyr Pellerin

  This is an issue I've been struggling with for quite some time, with a seemingly simple answer (Aren't all IT problems?). And that is the problem of passing traffic between two directly connected subnets with an ASA While I'm aware that best practice is to have Internet - Firewall - Router, in many cases this isn't possible. For example, In have an ASA with two interfaces, named OutsideNetwork (10.19.200.3/24) and InternalNetwork (10.19.4.254/24). You'd expect Outside to be able to get to, say, 10.19.4.1, or at LEAST 10.19.4.254, but pinging the interface gives only bad news. Result of the command: "ping OutsideNetwork 10.19.4.254" Type escape sequence to abort. Sending 5, 100-byte ICMP Echos to 10.19.4.254, timeout is 2 seconds: ????? Success rate is 0 percent (0/5) Naturally, you'd assume that you could add a static route, to no avail. [ERROR] route Outsidenetwork 10.19.4.0 255.255.255.0 10.19.4.254 1 Cannot add route, connected route exists At this point, you might gander if its a NAT or Access list problem. access-list Outsidenetwork_access_in extended permit ip any any access-list Internalnetwork_access_in extended permit ip any any There is no dynamic nat (or static nat for that matter), and Unnatted traffic is permitted. When I try pinging the above address (10.19.4.254 from Outsidenetwork), I get this error message from level 0 logging (debugging). Routing failed to locate next hop for icmp from NP Identity Ifc:10.19.200.3/0 to Outsidenetwork:10.19.4.1/0 This led me to set same-security traffic permit, and assigned the same, lesser and greater security numbers between the two interfaces. Am I overlooking something obvious? Is there a command to set static routes that are classified higher than connected routes?

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• How to install a desktop environment onto Ubuntu Server -- but without internet access or a CDROM?

  - by James

  I am playing around with a computer which has no CDROM drive or internet access and I have installed Ubuntu Server onto it. I have that all up and running nicely but now I'd like to install Xfce, GNOME or something similar so I can load up a desktop environment from the command line if I wish. Obviously with internet access or a CDROM, this would be a simple task of using apt-get and it finding & retrieving the packages for me, I assume, but I do not have either. I do however have a USB drive and I have used Unetbootin to make it into a bootable drive with the Ubuntu Server disk image files on there. I have mounted the USB drive to /media/usb0 and tried the command "sudo apt-cdrom add -d /media/usb0" to get apt to recognise the USb drive as an "Ubuntu CD" -- a source of package files but apt-get doesn't seem to be finding Xfce.. I try "sudo apt-get install xfce" and "sudo apt-get install xfce4" but neither find the package.. I would prefer to have Xfce but GNOME would be OK too.. My question is, am I doing something wrong? I figured that the Ubuntu Server disk (or rather, my Ubuntu Server USB drive) might not have any desktop environment packages on there so I tried the Xubuntu Desktop disk too (again, from my USB drive). I tried "sudo apt-get install xubuntu-desktop" but it couldn't find the package - even though it is listed under the /casper/ directory in some MANIFEST file. Anyone see where I'm going wrong? Maybe apt-get install is looking somewhere other than my USB drive? Maybe my commands are wrong? Maybe the disks don't even have the desktop environments on!? Thanks in advance guys, any input would be much appreciated. Cheers - James

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• Pip installs on Archlinux fails to build egg

  - by stmfunk

  I was trying to install nltk on my Archlinux server but it repeatedly fails with the following error output /usr/lib/python3.3/distutils/dist.py:257: UserWarning: Unknown distribution option: 'entry_points' warnings.warn(msg) /usr/lib/python3.3/distutils/dist.py:257: UserWarning: Unknown distribution option: 'zip_safe' warnings.warn(msg) /usr/lib/python3.3/distutils/dist.py:257: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: setup.py --help [cmd1 cmd2 ...] or: setup.py --help-commands or: setup.py cmd --help error: invalid command 'bdist_egg' /tmp/pip_build_root/nltk/distribute-0.6.21-py3.3.egg Traceback (most recent call last): File "./distribute_setup.py", line 143, in use_setuptools raise ImportError ImportError During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 16, in File "/tmp/pip_build_root/nltk/setup.py", line 23, in distribute_setup.use_setuptools() File "./distribute_setup.py", line 145, in use_setuptools return _do_download(version, download_base, to_dir, download_delay) File "./distribute_setup.py", line 125, in _do_download _build_egg(egg, tarball, to_dir) File "./distribute_setup.py", line 116, in _build_egg raise IOError('Could not build the egg.') OSError: Could not build the egg. ---------------------------------------- Cleaning up... Command python setup.py egg_info failed with error code 1 in /tmp/pip_build_root/nltk Storing complete log in /root/.pip/pip.log This error is also occurring for matplotlib buts thats the only other library I found it to fail on so far. pyyaml installs fine. The install works perfectly under virtualenv on my mac which is using python 2.7 but the server is using python 3.3. Any help is appreciated.

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• Installing Numpy locally

  - by Néstor

  I posted this question originally on StackOverflow, but a user suggested I moved it here so here I go! I have an account in a remote computer without root permissions and I needed to install a local version of Python (the remote computer has a version of Python that is incompatible with some codes I have), Numpy and Scipy there. I've been trying to install numpy locally since yesterday, with no success. I successfully installed a local version of Python (2.7.3) in /home/myusername/.local/, so I access to this version of Python by doing /home/myusername/.local/bin/python. I tried two ways of installing Numpy: I downloaded the lastest stable version of Numpy from the official webpage, unpacked it, got into the unpacked folder and did: /home/myusername/.local/bin/python setup.py install --prefix=/home/myusername/.local. However, I get the following error, which is followed by a series of other errors (deriving from this one): gcc -pthread -shared build/temp.linux-x86_64-2.7/numpy/core/blasdot/_dotblas.o -L/usr/local/lib -Lbuild/temp.linux-x86_64-2.7 -lptf77blas -lptcblas -latlas -o build/lib.linux-x86_64-2.7/numpy/core/_dotblas.so /usr/bin/ld: /usr/local/lib/libptcblas.a(cblas_dptgemm.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC Not really knowing what this meant (except that the error apparently has to do with the LAPACK library), I just did the same command as above, but now putting LDFLAGS='-fPIC', as suggested by the error i.e., I did LDFLAGS="-fPIC" /home/myusername/.local/bin/python setup.py install --prefix=/home/myusername/.local. However, I got the same error (except that the prefix -fPIC was addeded after the gcc command above). I tried installing it using pip, i.e., doing /home/myusername/.local/bin/pip install numpy /after successfully instaling pip in my local path). However, I get the exact same error. I searched on the web, but none of the errors seemed to be similar to mine. My first guess is that this has to do with some piece of code that needs root permissions to be executed, or maybe with some problem with the version of the LAPACK libraries or with gcc (gcc version 4.1.2 is installed on the remote computer). Help, anyone?

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• Loading a big database dump into PostgreSQL using cat

  - by RussH

  I have a pair of very large (~17 GB) database dumps that I want to load into postgresql 9.3. After installing the database packages, learning more or less how to use them, and fiddling around a little on various StackExchange pages (particularly this question), it looks like a proper command for me to use is something like: cat mydb.pgdump | psql mydb because of the format the dump is in. My machine has 16 GB of RAM, and I'm not familiar with the cat command but I do know that my RAM is 99% exhausted and the database is taking a while to load. My machine isn't non-responsive to the point of hanging; I can run other commands in other terminal windows and have them execute at a reasonable clip, but I am wondering if cat is the best way to pipe in the file or if something else is more efficient? My concern is that maybe cat could be using up all the RAM so the database doesn't have much to work with, throttling its performance. But I'm new to thinking about RAM issues like this and don't know if I'm worrying about nothing. Now that I think about it, this seems to be more of a question about cat and its memory usage than anything else. If there is a more appropriate forum for this question please let me know. Thanks!

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• Limiting ssh user account only to access his home directory!

  - by EBAGHAKI

  By reading some tutorials online I used these commands: Make a local group: net localgroup CopsshUsers /ADD Deny access to this group at top level: cacls c:\ /c /e /t /d CopsshUsers Open access to the copSSH installation directory: cacls copssh-inst-dir /c /e /t /r CopsshUsers Add Copssh user to the group above: net localgroup CopsshUsers mysshuser /add simply put these commands will try to create a usergroup that has no permission on your computer and it only have access to the copSSH Installation directory. This is not true, since you cannot change the permission on your windows directory, the third command won't remove access to windows folder (it says access denied on his log). Somehow I achieved that by taking ownership of Windows folder and then i execute the third command so CopsshUsers has no permissions on windows folder from now on. Now i tried to SSH to the server and it simply can't login! this is kind of funny because with permission on windows directory you can login and without it you can't!! So if you CAN SSH to the server somehow you know that you have access to the windows directory! (Is this really true??) Simple task: Limiting ssh user account only to access his home directory on WINDOWS and nothing else! Guys please help!

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• Creating a pseudoterminal to make sudo happy

  - by larsks

  I need to automate the provisioning of a cloud instance (running Fedora 17) for which the following initial facts are true: I have ssh-key based access to a remote user (cloud) That user has password-free root access via sudo. Manual configuration is as simple as logging in and running sudo su - and having at it, but I would like to fully automate this process. The trick is that the system defaults to having the requiretty option enabled for sudo, which means that an attempt to do something like this: ssh remotehost sudo yum -y install puppet Will fail: sudo: sorry, you must have a tty to run sudo I am working around this right now by first pushing over a small Python script that will run a command on a pseudoterminal: import os import sys import errno import subprocess pid, master_fd = os.forkpty() if pid == 0: # child process: now that we're attached to a # pty, run the given command. os.execvp(sys.argv[1], sys.argv[1:]) else: while True: try: data = os.read(master_fd, 1024) except OSError, detail: if detail.errno == errno.EIO: break if not data: break sys.stdout.write(data) os.wait() Assuming that this is named pty, I can then run: ssh remotehost ./pty sudo yum -y install puppet This works fine, but I'm wondering if there are solutions already available that I haven't considered. I would normally think about expect, but it's not installed by default on this system. screen can do this in a pinch, but the best I came up with was: screen -dmS sudo somecommand ...which does work but eats the output. Are there any other tools available that will allocate a pseudoterminal for me that are going to be generally available?

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• Postfix SMTP-relay server against Gmail on CentOS 6.4

  - by Alex

  I'm currently trying to setup an SMTP-relay server to Gmail with Postfix on a CentOS 6.4 machine, so I can send e-mails from my PHP scripts. I followed this tutorial but I get this error output when trying to do a sendmail [email protected] Output: tail -f /var/log/maillog Apr 16 01:25:54 ext-server-dev01 postfix/cleanup[3646]: 86C2D3C05B0: message-id=<[email protected]> Apr 16 01:25:54 ext-server-dev01 postfix/qmgr[3643]: 86C2D3C05B0: from=<[email protected]>, size=297, nrcpt=1 (queue active) Apr 16 01:25:56 ext-server-dev01 postfix/smtp[3648]: 86C2D3C05B0: to=<[email protected]>, relay=smtp.gmail.com[173.194.79.108]:587, delay=4.8, delays=3.1/0.04/1.5/0.23, dsn=5.5.1, status=bounced (host smtp.gmail.com[173.194.79.108] said: 530-5.5.1 Authentication Required. Learn more at 530 5.5.1 http://support.google.com/mail/bin/answer.py?answer=14257 qh4sm3305629pac.8 - gsmtp (in reply to MAIL FROM command)) Here is my main.cf configuration, I tried a number of different options but nothing seems to work: alias_database = hash:/etc/aliases alias_maps = hash:/etc/aliases command_directory = /usr/sbin config_directory = /etc/postfix daemon_directory = /usr/libexec/postfix data_directory = /var/lib/postfix debug_peer_level = 2 html_directory = no inet_interfaces = localhost inet_protocols = ipv4 mail_owner = postfix mailq_path = /usr/bin/mailq.postfix manpage_directory = /usr/share/man mydestination = $myhostname, localhost.$mydomain, localhost myhostname = host.local.domain myorigin = $myhostname newaliases_path = /usr/bin/newaliases.postfix queue_directory = /var/spool/postfix readme_directory = /usr/share/doc/postfix-2.6.6/README_FILES relayhost = [smtp.gmail.com]:587 sample_directory = /usr/share/doc/postfix-2.6.6/samples sendmail_path = /usr/sbin/sendmail.postfix setgid_group = postdrop smtp_sasl_auth_enable = yes smtp_sasl_password_maps = hash:/etc/postfix/sasl_passwd smtp_sasl_security_options = noanonymous smtp_sasl_tls_security_options = noanonymous smtp_sasl_type = cyrus smtp_tls_CAfile = /etc/ssl/certs/ca-bundle.crt smtp_use_tls = yes smtpd_sasl_path = smtpd unknown_local_recipient_reject_code = 550 In the /etc/postfix/sasl_passwd files (sasl_passwd & sasl_passwd.db) I got the following (removed the real password, and replaced it with "password"): [smtp.google.com]:587 [email protected]:password To create the sasl_passwd.db file, I did that by running this command: postmap hash:/etc/postfix/sasl_passwd Do anybody got an idea why I can't seem to send an e-mail from the server? Kind Regards Alex

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• SendMail not working in CentOs 6.4

  - by Kane

  I am trying to send e-mails from my CentOS 6.4 but it does not work. My knowledge about servers is quite limited, so I hope someone can help me. Here is what I did: First i tried to send an email using the "mail" command, but it was not in the OS so I installed it. # yum install mailx After that, I tried sending an email using the "mail" command, but it did not send anything. I checked it on the internet and I realized I needed an e-mail server like sendmail, so I installed it. # yum install sendmail sendmail-cf sendmail-doc sendmail-devel After that, I configured it following some tutorials. First, sendmail.mc file. # vi /etc/mail/sendmail.mc Commented out the next line: BEFORE # DAEMON_OPTIONS('Port=smtp, Name=MTA') dnl AFTER # dnl DAEMON_OPTIONS('Port=smtp, Name=MTA') dnl Check that the next lines are correct: # FEATURE(`virtusertable', `hash -o /etc/mail/virtusertable.db')dnl # ... # FEATURE(use_cw_file)dnl # ... # FEATURE(`access_db', `hash -T<TMPF> -o /etc/mail/access.db')dnl Update sendmail.cf # m4 /etc/mail/sendmail.mc > /etc/mail/sendmail.cf Open the port 25 adding the proper line in the iptables file # vi /etc/sysconfig/iptables # -A INPUT -m state --state NEW -m tcp --dport 25 -j ACCEPT restart iptables and sendmail # service iptables restart # service sendmail restart So i thought that would be ok, but when i tried: # mail '[email protected]' # Subject: test subject # test content #. I checked the mail log: # vi /var/log/maillog And that is what I found: Aug 14 17:36:24 dev-admin-test sendmail[20682]: r7D8RItS019578: to=<[email protected]>, ctladdr=<[email protected]> (0/0), delay=1+00:09:06, xdelay=00:00:00, mailer=esmtp, pri=2460500, relay=alt4.gmail- smtp-in.l.google.com., dsn=4.0.0, stat=Deferred: Connection timed out with alt4.gmail-smtp-in.l.google.com. I do not understand why there is a connection time out. Am I missing something? Can anyone help me, please? Thank you.

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• How can I switch from a custom linux network namespace back to the default one?

  - by Martin

  With ip netns exec you can execute a command in a custom network namespace - but is there also a way to execute a command in the default namespace? For example, after executing these two commands: sudo ip netns add test_ns sudo ip netns exec test_ns bash How can the newly created bash execute programs in the default network namespace? There is no ip netns exec default or anything similar as far as I've found. My scenario is: I want to run a SSH server in a separate network namespace (to keep the rest of the system unaware of the network connection, as the system is used for network testing), but want to be able to execute programs in the default network namespace via the SSH connection. What I've found out so far: Created network namespaces are listed as files under /var/run/netns (but there is no file for the default namespace) The ip netns exec code can be found here: http://git.kernel.org/cgit/linux/kernel/git/shemminger/iproute2.git/tree/ip/ipnetns.c#n132 - I haven't grasped everything that it is doing yet, but it doesn't look very promising. ip netns identify $$ as suggested by Howto query and change network namespace on linux? returns nothing when in the default network namespace

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• Extract a section of a tgz file

  - by TRiG

  I have a 28.5 GB .tgz file which was created on the command line of a Linux computer, compressing one folder and all its many many subfolders. I now want to extract a single sub-sub folder from that .tgz file, using 7zip on Windows Vista. I can't see a way to do it. Opening the .tgz file in 7zip just shows the .tar file inside it. There doesn't seem to be any way to browse that .tar file and extract the section I want. I assume there is a way to do this, but I can't see it. Simply double-clicking on the .tar file brings up a progress bar which runs slowly till my computer complains it's running out of space; I imagine it's trying to extract the whole thing. Searching for "extract section of tgz" and "extract tgz subfolder" and similar found me a way to do it on the Linux command line, but no obvious way to do it on Windows. (Most results found were about extracting into a subfolder, not extracting a subfolder out of the archive.)

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• Unable to run cvlc in a script

  - by VxJasonxV

  I'm creating a script that issues a few curl commands in order to access a time-protected mms stream link, then set up a relay using cvlc (vlc's command line interface) for my own use on an unencumbered player. The curl aspect of this is working, as I can run as a browser and curl side by side and get the same access url. (It's time locked meaning the stream will work forever, but you have to connect quickly or the URL will time out.) The very end of the script prints the command I will run, which is then followed up by "exec $CMD". When I echo $CMD I get: cvlc --sout '#standard{access=http,mux=asf,dst=0.0.0.0:58194}' mms://[...] But the cvlc execution output says: [0x9743d0] main interface error: no suitable interface module [0x962120] main libvlc error: interface "globalhotkeys,none" initialization failed [0x9743d0] dummy interface: using the dummy interface module... [0xb16e30] stream_out_standard stream out error: no mux specified or found by extension [0xb16ad0] main stream output error: stream chain failed for `standard{mux="",access="",dst="'#standard{access=http,mux=asf,dst=0.0.0.0:58194}'"}' [0xb11cd0] main input error: cannot start stream output instance, aborting [0xb11f70] signals interface error: Caught Interrupt signal, exiting... Why is it ignoring my --sout input?

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• Is execution of sync(8) still required before shutting down linux?

  - by Amos Shapira

  I still see people recommend use of "sync; sync; sync; sleep 30; halt" incantations when talking about shutting down or rebooting Linux. I've been running Linux since its inception and although this was the recommended procedure in the BSD 4.2/4.3 and SunOS 4 days, I can't recall that I had to do that for at least the last ten years, during which I probably went through shutdown/reboot of Linux maybe thousands of times. I suspect that this is an anachronism since the days that the kernel couldn't unmount and sync the root filesystem and other critical filesystems required even during single-user mode (e.g. /tmp), and therefore it was necessary to tell it explicitly to flush as much data as it can to disk. These days, without finding the relevant code in the kernel source yet (digging through http://lxr.linux.no and google), I suspect that the kernel is smart enough to cleanly unmount even the root filesystem and the filesystem is smart enough to effectively do a sync(2) before unmounting itself during a normal "shutdown"/"reboot"/"poweorff". The "sync; sync; sync" is only necessary in extreme cases where the filesystem won't unmount cleanly (e.g. physical disk failure) or the system is in a state that only forcing a direct reboot(8) will get it out of its freeze (e.g. the load is too high to let it schedule the shutdown command). I also never do the "sync" procedure before unmounting removable devices, and never hit a problem. Another example - Xen allows the DomU to be sent a "shutdown" command from the Dom0, this is considered a "clean shutdown" without anyone having to login and type the magical "sync; sync; sync" first. Am I right or was I lucky for a few thousands of system shutdowns?

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• Prevent Amazon EC2 Time zone from reverting back on yum update

  - by D.Tate

  I use an Amazon EC2 server instance that runs a distro called Amazon Linux AMI. (I've read that it is based on CentOS/Red Hat). My specific version is the 2012.09 release. Anyway, I was able to change the time zone about a week ago from the default UTC to America/New_York (which is EST/EDT). The command I used to change it was: ln -sf /usr/share/zoneinfo/America/New_York /etc/localtime ...thanks to this other Server Fault question. At that point, I was able to run date from the the command line, and it correctly displayed the EDT time. And even after EDT "fell back" to EST this past Sunday, I was pleased to find that running date still produced the correct local time. So that was great. However, after running a yum update yesterday, it seems that my time zone got reverted back to plain 'ol UTC. I even checked the last modified time of /etc/localtime file, and indeed it confirmed that it had been modified around the same time I had updated. Is there any way to prevent this from happening again, or will I be stuck resetting the time zone every time I do a yum update?

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