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  • Problem with launching JAGUAR in R

    - by Gerry
    Windows XP, R 2.11.1, Java JRE6 I just installed the Jaguar package. From an R console, I can do this: > library(JGR) Loading required package: rJava Loading required package: JavaGD Loading required package: iplots Please use the corresponding JGR launcher to start JGR. Run JGR() for details. You can also use JGR(update=TRUE) to update JGR. and so JGR appears to be correctly installed. JGR() yields On Windows JGR must be started using the JGR.exe launcher. Please visit http://www.rosuda.org/JGR/ to download it. > I'm not sure how to run Jaguar - I know I have to run jgr.exe - but should R be already open? If so, should the JGR library be already loaded? I've tried all of these, and what seems to happen regardless is a console window opens briefly, then disappears. I've run jrg --debug, with no apparent error message: (same file regardless of choice made above). What should I be doing? Thanks! System: Version 5.1 (build 2600), platform 2 [Service Pack 3] JGR loader version 1.61 (build Jul 23 2008) parseParams> 1 parameters parsed. parseParams par 10> "--debug" > rhome="C:\Program Files\R\R-2.11.1" > srhome="C:\PROGRA~1\R\R-211~1.1" getPkgVersion(JGR): 010702 getPkgVersion(rJava): 000805 getPkgVersion(JavaGD): 000503 getPkgVersion(iplots): 010103 Loading preferences from "C:\Documents and Settings\gblais\.JGRprefsrc" > javakey="Software\JavaSoft\Java Runtime Environment\1.6" > javah="C:\Program Files\Java\jre6" > tp="C:\Perl\site\bin;C:\Perl\bin;C:\PHP\;C:\Program Files\MiKTeX 2.8\miktex\bin;C:\Python26\Lib\site-packages\PyQt4;C:\Program Files\Tcl\bin;C:\oracle\product\10.2.0\client_2\BIN;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program Files\Support Tools\;c:\belfry;c:\belfry\usr\local\wbin;C:\WINDOWS;C:\WINDOWS\System32;C:\WINDOWS\System32\WBEM;c:\Program Files\QuickTime\QTSystem\;C:\Program Files\SlikSvn\bin\;c:\progra~1\Microsoft Visual Studio 9.0\VC\bin\" Got RuntimeLib from registry, using "C:\Program Files\Java\jre6\bin\client;" PATH prefix. Java home: "C:\Program Files\Java\jre6" R home: "C:\Program Files\R\R-2.11.1" JAR files: "-Drjava.class.path=C:\PROGRA~1\R\R-211~1.1\library\rJava\jri\JRI.jar;C:\PROGRA~1\R\R-211~1.1\library\iplots\java\iplots.jar;C:\PROGRA~1\R\R-211~1.1\library\JGR\java\JGR.jar;C:\PROGRA~1\R\R-211~1.1\etc\classes;C:\PROGRA~1\R\R-211~1.1\etc\classes.jar" desired PATH: "C:\Program Files\Java\jre6\bin\client;C:\Program Files\Java\jre6\bin\client;C:\Program Files\Java\jre6\bin;C:\Program Files\R\R-2.11.1\bin;C:\PROGRA~1\R\R-211~1.1\library\rJava\jri;C:\Perl\site\bin;C:\Perl\bin;C:\PHP\;C:\Program Files\MiKTeX 2.8\miktex\bin;C:\Python26\Lib\site-packages\PyQt4;C:\Program Files\Tcl\bin;C:\oracle\product\10.2.0\client_2\BIN;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program Files\Support Tools\;c:\belfry;c:\belfry\usr\local\wbin;C:\WINDOWS;C:\WINDOWS\System32;C:\WINDOWS\System32\WBEM;c:\Program Files\QuickTime\QTSystem\;C:\Program Files\SlikSvn\bin\;c:\progra~1\Microsoft Visual Studio 9.0\VC\bin\" actual PATH: "C:\Program Files\Java\jre6\bin\client;C:\Program Files\Java\jre6\bin\client;C:\Program Files\Java\jre6\bin;C:\Program Files\R\R-2.11.1\bin;C:\PROGRA~1\R\R-211~1.1\library\rJava\jri;C:\Perl\site\bin;C:\Perl\bin;C:\PHP\;C:\Program Files\MiKTeX 2.8\miktex\bin;C:\Python26\Lib\site-packages\PyQt4;C:\Program Files\Tcl\bin;C:\oracle\product\10.2.0\client_2\BIN;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program Files\Support Tools\;c:\belfry;c:\belfry\usr\local\wbin;C:\WINDOWS;C:\WINDOWS\System32;C:\WINDOWS\System32\WBEM;c:\Program Files\QuickTime\QTSystem\;C:\Program Files\SlikSvn\bin\;c:\progra~1\Microsoft Visual Studio 9.0\VC\bin\" getenv PATH: "C:\Perl\site\bin;C:\Perl\bin;C:\PHP\;C:\Program Files\MiKTeX 2.8\miktex\bin;C:\Python26\Lib\site-packages\PyQt4;C:\Program Files\Tcl\bin;C:\oracle\product\10.2.0\client_2\BIN;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program Files\Support Tools\;c:\belfry;c:\belfry\usr\local\wbin;C:\WINDOWS;C:\WINDOWS\System32;C:\WINDOWS\System32\WBEM;c:\Program Files\QuickTime\QTSystem\;C:\Program Files\SlikSvn\bin\;c:\progra~1\Microsoft Visual Studio 9.0\VC\bin\" argv[0]:C:\PROGRA~1\Java\jre6\bin\java.exe argv[1]:-Drjava.class.path=C:\PROGRA~1\R\R-211~1.1\library\rJava\jri\JRI.jar;C:\PROGRA~1\R\R-211~1.1\library\iplots\java\iplots.jar;C:\PROGRA~1\R\R-211~1.1\library\JGR\java\JGR.jar;C:\PROGRA~1\R\R-211~1.1\etc\classes;C:\PROGRA~1\R\R-211~1.1\etc\classes.jar argv[2]:-Xmx512m argv[3]:-cp argv[4]:C:\PROGRA~1\R\R-211~1.1\library\rJava\java\boot argv[5]:-Drjava.path=C:\PROGRA~1\R\R-211~1.1\library\rJava argv[6]:-Dmain.class=org.rosuda.JGR.JGR argv[7]:-Djgr.load.pkgs=yes argv[8]:-Djgr.loader.ver=1.61 argv[9]:RJavaClassLoader argv[10]:--debug

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  • correct Installation and configuration of openJDK and R

    - by Marco K
    I am relatively new to Ubuntu so I wont know a lot of commands that probably became standard to a lot of you guys. I am trying to set up R and with it the necessary java dependencies to install e.g. JGR, rjava, etc. I read through quite a few instructions to do that but somehow I must have done sth wrong. Here is the state of R and java: R --version R version 2.14.1 (2011-12-22) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) java -version java version "1.6.0_23" OpenJDK Runtime Environment (IcedTea6 1.11pre) (6b23~pre11-0ubuntu1.11.10.1) OpenJDK 64-Bit Server VM (build 20.0-b11, mixed mode) R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_23 Java home path : /usr/lib/jvm/java-6-openjdk/jre Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar Java library path: /usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server:/usr/lib/jvm/java-6-openjdk/jre/lib/amd64:/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64:/usr/java/packages/lib/amd64:/usr/lib/jni:/lib:/usr/lib JNI linker flags : -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64 -L/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64 -L/usr/java/packages/lib/amd64 -L/usr/lib/jni -L/lib -L/usr/lib -ljvm JNI cpp flags : But when I try to install 'JavaGD' in R, which is a dependency for JGR I get: ... checking Java support in R... present: interpreter : '/usr/bin/java' cpp flags : '' java libs : '-L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server -L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64 -L/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64 -L/usr/java/packages/lib/amd64 -L/usr/lib/jni -L/lib -L/usr/lib -ljvm' configure: error: One or more Java configuration variables are not set. Make sure R is configured with full Java support (including JDK). Run R CMD javareconf as root to add Java support to R. ... Any help would be greatly appreciated. Thanks!

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  • Execute method with Action<T> argument using Reflection

    - by JGr
    How can i create a Action method to use as a argument to the following function? public void When(Action<T> action) { if (internalValue != null) action(internalValue); } I have the MethodInfo on the method, and the parameter type like so: var methods = value.GetType().GetMethods(); MethodInfo mInfo = methods.First(method => method.Name == "When"); Type parameterType = (mInfo.GetParameters()[0]).ParameterType; But after that i have no idea how to make the actual Action method to pass as argument, i also do not know how to define the Action method body.

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  • Using R in Processing through rJava/JRI?

    - by tommy-o-dell
    Hi guys, Is it possible to run R in Processing through rJava/JRI? If I deployed a Processing app on the web, would the client need R on their system? I'm looking to create an interactive information dashboard that I can deploy on the web. It seems that Processing is probably my best bet for the interactive/web part of things. Unfortunately, it doesn't look like there are many math/stats functions built-in. And there aren't any libraries for plotting data either. I've been using R and gpplot2 for a few months and am thrilled (amazed) at how easily it manipulates and plots data. So I'm wondering now if can get the best of both worlds and run R through a Processing applet. From the JRI website: JRI is a Java/R Interface, which allows to run R inside Java applications as a single thread. Basically it loads R dynamic library into Java and provides a Java API to R functionality. It supports both simple calls to R functions and a full running REPL. In a sense JRI is the inverse of rJava and both can be combined (i.e. you can run R code inside JRI that calls back to the JVM via rJava). The JGR project makes the full use of both JRI and rJava to provide a full Java GUI for R. JRI uses native code, but it supports all platforms where Sun's Java (or compatible) is available, including Windows, Mac OS X, Sun and Linux (both 32-bit and 64-bit). Thanks for the advice :)

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